Wall clock time and date at job start Tue Mar 31 2020 09:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46723 * 2 1 4 4 N 1.46509 * 109.46890 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00141 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00120 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00098 * 179.97438 * 5 4 3 8 8 C 1.53005 * 109.47127 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46864 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00528 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99910 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00101 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47289 * 186.21316 * 12 11 9 14 14 H 1.09005 * 110.00142 * 300.67608 * 13 12 11 15 15 C 1.54334 * 109.99443 * 179.63435 * 13 12 11 16 16 C 1.55157 * 103.02081 * 218.66882 * 15 13 12 17 17 C 1.54915 * 101.58216 * 35.30333 * 16 15 13 18 18 N 1.47027 * 109.87930 * 61.76565 * 13 12 11 19 19 C 1.36935 * 125.64987 * 298.39539 * 18 13 12 20 20 H 1.08003 * 119.99874 * 38.42790 * 19 18 13 21 21 C 1.38816 * 120.00046 * 218.43406 * 19 18 13 22 22 N 1.31613 * 119.99834 * 193.27249 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 13.26795 * 21 19 18 24 24 H 1.48497 * 109.46998 * 267.03687 * 23 21 19 25 25 H 1.48494 * 109.46953 * 147.03695 * 23 21 19 26 26 H 1.48499 * 109.46972 * 27.03820 * 23 21 19 27 27 H 1.09003 * 109.47120 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47131 * 299.99753 * 1 2 3 29 29 H 1.08996 * 109.47725 * 59.99893 * 1 2 3 30 30 H 1.09003 * 109.46488 * 240.00619 * 2 1 3 31 31 H 1.08994 * 109.47253 * 120.00315 * 2 1 3 32 32 H 1.09000 * 109.47486 * 60.00632 * 3 2 1 33 33 H 1.09003 * 109.47633 * 300.00110 * 3 2 1 34 34 H 0.97002 * 119.99450 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.47111 * 60.00094 * 7 5 4 36 36 H 1.08996 * 109.47487 * 299.99515 * 7 5 4 37 37 H 1.09000 * 109.47013 * 59.99912 * 8 7 5 38 38 H 1.08994 * 109.47335 * 300.00003 * 8 7 5 39 39 H 0.97005 * 119.99669 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.46538 * 66.21596 * 12 11 9 41 41 H 1.08997 * 109.47438 * 306.21491 * 12 11 9 42 42 H 1.08993 * 110.84758 * 100.19779 * 15 13 12 43 43 H 1.09000 * 110.66600 * 337.04519 * 15 13 12 44 44 H 1.09003 * 111.00000 * 277.23336 * 16 15 13 45 45 H 1.08997 * 111.00667 * 153.37651 * 16 15 13 46 46 H 1.08997 * 110.36505 * 204.15403 * 17 16 15 47 47 H 1.08994 * 110.36359 * 81.83463 * 17 16 15 48 48 H 0.97007 * 119.99787 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5724 3.6601 0.0002 7 6 5.6858 2.6097 -0.0003 8 6 6.1958 4.0523 -0.0004 9 6 7.7028 4.0523 -0.0011 10 8 8.3093 3.0020 -0.0010 11 7 8.3767 5.2195 -0.0008 12 6 9.8417 5.2195 -0.0009 13 6 10.3517 6.6535 0.1556 14 1 9.9833 7.2717 -0.6630 15 6 11.8950 6.6664 0.1663 16 6 12.2282 7.7424 1.2333 17 6 11.0862 7.5283 2.2580 18 7 9.9018 7.2066 1.4414 19 6 8.5983 7.3875 1.8201 20 1 7.8518 6.6540 1.5534 21 6 8.2365 8.5137 2.5466 22 7 7.0595 8.5684 3.1329 23 14 9.4202 9.9514 2.6921 24 1 10.2339 9.7998 3.9250 25 1 8.6518 11.2203 2.7590 26 1 10.3159 9.9770 1.5079 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9900 0.6025 -0.0006 35 1 6.0491 2.0962 -0.8905 36 1 6.0492 2.0957 0.8895 37 1 5.8325 4.5662 0.8896 38 1 5.8325 4.5661 -0.8903 39 1 7.8917 6.0596 -0.0005 40 1 10.2049 4.8053 -0.9414 41 1 10.2051 4.6121 0.8280 42 1 12.2872 6.9557 -0.8087 43 1 12.2858 5.6936 0.4645 44 1 12.1859 8.7438 0.8048 45 1 13.2010 7.5542 1.6875 46 1 10.9155 8.4393 2.8316 47 1 11.3247 6.6989 2.9238 48 1 6.8067 9.3552 3.6409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753116845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:12 Heat of formation + Delta-G solvation = -89.414317 kcal Electronic energy + Delta-G solvation = -25973.399954 eV Core-core repulsion = 22255.354300 eV Total energy + Delta-G solvation = -3718.045654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.11897 -40.45821 -39.36855 -36.82529 -35.46196 -34.63202 -34.06134 -33.30367 -31.76650 -30.90831 -28.08705 -26.67355 -25.93739 -24.62025 -22.57481 -22.38211 -21.43788 -21.28300 -20.73437 -19.10920 -18.29200 -17.93264 -17.22242 -17.20476 -16.95661 -16.64729 -16.50940 -16.13637 -15.68293 -15.26283 -14.93608 -14.85629 -14.43060 -14.19679 -14.05234 -13.81687 -13.71643 -13.57408 -13.29710 -13.13806 -13.02162 -12.94038 -12.82973 -12.57881 -12.25130 -12.18127 -12.03704 -12.00029 -11.75519 -11.72755 -11.49393 -11.36675 -10.95755 -10.80631 -10.68360 -10.12530 -9.86270 -8.68966 -8.14301 -5.60887 1.31039 1.40382 1.51689 1.59500 1.69984 2.06336 2.42666 2.57164 3.09907 3.36006 3.61809 3.90902 3.93586 3.97773 4.02994 4.05955 4.11110 4.13667 4.20288 4.35403 4.35916 4.51428 4.63051 4.65961 4.71175 4.75765 4.76758 4.85129 4.88267 4.89703 4.96303 5.01068 5.02122 5.14468 5.16346 5.24271 5.33310 5.33987 5.48754 5.50041 5.62682 5.92831 6.23168 6.51385 6.65775 6.84887 7.22538 7.30570 7.56100 8.23906 9.02184 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.002737 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.030271 B =10226.829472 C =11474.607815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.113 3.887 4 N -0.719 5.719 5 C 0.512 3.488 6 O -0.584 6.584 7 C -0.111 4.111 8 C -0.121 4.121 9 C 0.511 3.489 10 O -0.586 6.586 11 N -0.713 5.713 12 C 0.121 3.879 13 C 0.138 3.862 14 H 0.049 0.951 15 C -0.110 4.110 16 C -0.126 4.126 17 C 0.104 3.896 18 N -0.619 5.619 19 C -0.240 4.240 20 H 0.075 0.925 21 C -0.025 4.025 22 N -0.952 5.952 23 Si 0.952 3.048 24 H -0.288 1.288 25 H -0.317 1.317 26 H -0.250 1.250 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.418 0.582 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.410 0.590 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.021 0.979 47 H 0.029 0.971 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 -15.419 -9.629 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.010 4.010 4 N -0.372 5.372 5 C 0.299 3.701 6 O -0.465 6.465 7 C -0.151 4.151 8 C -0.161 4.161 9 C 0.299 3.701 10 O -0.468 6.468 11 N -0.365 5.365 12 C -0.005 4.005 13 C 0.032 3.968 14 H 0.067 0.933 15 C -0.148 4.148 16 C -0.164 4.164 17 C -0.020 4.020 18 N -0.345 5.345 19 C -0.369 4.369 20 H 0.092 0.908 21 C -0.221 4.221 22 N -0.596 5.596 23 Si 0.784 3.216 24 H -0.216 1.216 25 H -0.246 1.246 26 H -0.174 1.174 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.137 0.863 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.249 0.751 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.117 0.883 46 H 0.039 0.961 47 H 0.046 0.954 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.501 -15.297 -9.532 18.086 hybrid contribution -0.113 1.197 0.844 1.469 sum -1.614 -14.100 -8.688 16.640 Atomic orbital electron populations 1.21702 0.94203 1.02856 1.02138 1.21689 0.97201 0.93683 1.03791 1.21489 0.79190 0.99016 1.01330 1.45926 1.07719 1.08663 1.74900 1.20955 0.90705 0.83609 0.74828 1.90727 1.71440 1.33052 1.51234 1.21274 0.89966 0.97079 1.06787 1.21287 0.90532 0.98896 1.05411 1.20832 0.90626 0.83446 0.75196 1.90597 1.71343 1.32012 1.52830 1.46406 1.08295 1.09089 1.72694 1.21869 0.79553 0.98526 1.00514 1.21519 0.95201 0.91572 0.88532 0.93312 1.22513 0.92191 0.99712 1.00366 1.22757 0.97928 0.99352 0.96390 1.22075 0.88397 0.96906 0.94658 1.44824 1.01082 1.75501 1.13095 1.18759 0.84256 1.02124 1.31760 0.90802 1.26135 0.96955 0.99849 0.99165 1.69910 1.23228 1.30329 1.36182 0.85700 0.78491 0.78845 0.78613 1.21604 1.24646 1.17446 0.90883 0.92803 0.92502 0.89982 0.90372 0.93065 0.92492 0.74531 0.86307 0.87594 0.89884 0.87848 0.75113 0.90670 0.93678 0.88129 0.89832 0.91709 0.88279 0.96140 0.95353 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.35 6.05 30.59 0.19 -1.17 16 3 C 0.11 2.04 5.67 86.38 0.49 2.53 16 4 N -0.72 -13.56 5.56 -463.04 -2.57 -16.13 16 5 C 0.51 13.81 7.83 87.66 0.69 14.49 16 6 O -0.58 -21.41 15.98 -3.05 -0.05 -21.46 16 7 C -0.11 -2.81 4.99 29.85 0.15 -2.66 16 8 C -0.12 -3.86 4.99 29.85 0.15 -3.71 16 9 C 0.51 18.48 7.83 87.66 0.69 19.17 16 10 O -0.59 -22.95 15.97 -3.04 -0.05 -23.00 16 11 N -0.71 -26.56 4.36 -463.06 -2.02 -28.57 16 12 C 0.12 4.17 5.19 86.38 0.45 4.62 16 13 C 0.14 4.79 3.34 45.34 0.15 4.94 16 14 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 15 C -0.11 -2.86 6.48 31.79 0.21 -2.65 16 16 C -0.13 -3.68 7.09 31.99 0.23 -3.45 16 17 C 0.10 4.15 6.14 86.86 0.53 4.68 16 18 N -0.62 -27.39 2.65 -668.23 -1.77 -29.16 16 19 C -0.24 -12.78 9.42 84.03 0.79 -11.98 16 20 H 0.07 4.13 5.44 -2.91 -0.02 4.12 16 21 C -0.02 -1.41 5.48 84.86 0.46 -0.95 16 22 N -0.95 -58.84 13.97 21.65 0.30 -58.54 16 23 Si 0.95 46.40 24.76 68.60 1.70 48.10 16 24 H -0.29 -13.83 6.86 99.48 0.68 -13.15 16 25 H -0.32 -15.91 7.11 99.48 0.71 -15.20 16 26 H -0.25 -11.28 6.76 99.48 0.67 -10.61 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.42 5.01 8.47 -92.71 -0.79 4.23 16 35 H 0.12 2.53 8.10 -2.39 -0.02 2.51 16 36 H 0.11 2.59 8.10 -2.39 -0.02 2.57 16 37 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 38 H 0.10 3.13 8.10 -2.39 -0.02 3.11 16 39 H 0.41 16.30 6.07 -92.70 -0.56 15.74 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.72 8.12 -2.39 -0.02 1.70 16 42 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.08 1.97 7.85 -2.39 -0.02 1.95 16 44 H 0.06 1.93 7.95 -2.39 -0.02 1.91 16 45 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.02 0.91 3.20 -2.39 -0.01 0.90 16 47 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -74.53 379.89 0.98 -73.55 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.45 Total: 32.17 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 5.88 Total: 23.04 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -6.06 Total: -132.40 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.10 Total: -44.46 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.70 Total: 48.10 kcal Total: -74.53 0.98 -73.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753116845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.863 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds