Wall clock time and date at job start Tue Mar 31 2020 09:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47321 * 2 1 4 4 N 1.46498 * 109.46789 * 180.02562 * 3 2 1 5 5 C 1.36944 * 120.00128 * 275.30809 * 4 3 2 6 6 H 1.08000 * 119.99699 * 37.58200 * 5 4 3 7 7 C 1.38809 * 119.99869 * 217.57947 * 5 4 3 8 8 N 1.31614 * 120.00342 * 21.43902 * 7 5 4 9 9 Si 1.86808 * 119.99651 * 201.43151 * 7 5 4 10 10 H 1.48498 * 109.46922 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46685 * 120.00464 * 9 7 5 12 12 H 1.48495 * 109.47009 * 240.00089 * 9 7 5 13 13 C 1.46498 * 120.00068 * 95.31531 * 4 3 2 14 14 C 1.52994 * 109.47491 * 269.99615 * 13 4 3 15 15 N 1.46498 * 109.47491 * 179.97438 * 14 13 4 16 16 C 1.34774 * 119.99957 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00165 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00034 * 180.02562 * 16 15 14 19 19 N 1.46499 * 109.47459 * 179.97438 * 18 16 15 20 20 C 1.45751 * 117.94505 * 270.02039 * 19 18 16 21 21 C 1.52924 * 110.48681 * 160.92115 * 20 19 18 22 22 C 1.53174 * 108.62744 * 50.75043 * 21 20 19 23 23 C 1.53065 * 108.51129 * 292.41211 * 22 21 20 24 24 C 1.33349 * 117.94946 * 89.99272 * 19 18 16 25 25 O 1.21287 * 118.24572 * 2.23237 * 24 19 18 26 26 H 1.08994 * 109.47090 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46811 * 299.99619 * 1 2 3 28 28 H 1.09001 * 109.47165 * 59.99740 * 1 2 3 29 29 H 1.09006 * 109.46811 * 240.00380 * 2 1 3 30 30 H 1.09004 * 109.47343 * 120.00765 * 2 1 3 31 31 H 1.08998 * 109.46649 * 60.00637 * 3 2 1 32 32 H 1.08993 * 109.47503 * 300.00128 * 3 2 1 33 33 H 0.97006 * 120.00212 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47364 * 149.99199 * 13 4 3 35 35 H 1.09000 * 109.46947 * 29.99765 * 13 4 3 36 36 H 1.08999 * 109.47156 * 59.99456 * 14 13 4 37 37 H 1.09000 * 109.47147 * 300.00028 * 14 13 4 38 38 H 0.96999 * 119.99764 * 359.97438 * 15 14 13 39 39 H 1.08999 * 109.47356 * 59.98992 * 18 16 15 40 40 H 1.09000 * 109.46879 * 299.99605 * 18 16 15 41 41 H 1.08998 * 109.30314 * 281.23693 * 20 19 18 42 42 H 1.09004 * 109.30535 * 40.82032 * 20 19 18 43 43 H 1.09004 * 109.60426 * 170.50812 * 21 20 19 44 44 H 1.08998 * 109.60186 * 290.82890 * 21 20 19 45 45 H 1.09000 * 109.56864 * 172.68752 * 22 21 20 46 46 H 1.08999 * 109.68793 * 52.21290 * 22 21 20 47 47 H 1.09003 * 109.40192 * 288.84297 * 23 22 21 48 48 H 1.09007 * 109.40066 * 169.01647 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1903 1.3324 1.1799 6 1 3.8186 0.6868 1.9619 7 6 5.3625 2.0508 1.3715 8 7 5.6026 3.1236 0.6480 9 14 6.5992 1.4947 2.6565 10 1 6.0969 0.2699 3.3294 11 1 7.8978 1.2007 1.9989 12 1 6.7860 2.5713 3.6621 13 6 4.2370 1.5600 -1.2642 14 6 4.4918 0.1648 -1.8379 15 7 5.2232 0.2825 -3.1017 16 6 5.5593 -0.8255 -3.7915 17 8 5.2566 -1.9200 -3.3657 18 6 6.3122 -0.7045 -5.0913 19 7 6.5560 -2.0405 -5.6407 20 6 7.7848 -2.7234 -5.2560 21 6 7.6649 -4.2262 -5.5128 22 6 7.1788 -4.4397 -6.9496 23 6 5.7391 -3.9309 -7.0562 24 6 5.6396 -2.5558 -6.4610 25 8 4.6742 -1.8773 -6.7418 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9564 -0.8899 33 1 6.4216 3.6258 0.7821 34 1 5.1895 2.0596 -1.0872 35 1 3.6476 2.1422 -1.9726 36 1 3.5393 -0.3347 -2.0149 37 1 5.0811 -0.4173 -1.1294 38 1 5.4650 1.1579 -3.4424 39 1 7.2649 -0.2053 -4.9143 40 1 5.7230 -0.1220 -5.7996 41 1 8.6161 -2.3238 -5.8368 42 1 7.9732 -2.5562 -4.1954 43 1 8.6385 -4.6985 -5.3817 44 1 6.9506 -4.6608 -4.8136 45 1 7.2115 -5.5019 -7.1920 46 1 7.8159 -3.8857 -7.6390 47 1 5.0752 -4.6074 -6.5179 48 1 5.4450 -3.8936 -8.1051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753145555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:13 Heat of formation + Delta-G solvation = -64.585936 kcal Electronic energy + Delta-G solvation = -26611.413069 eV Core-core repulsion = 22894.444054 eV Total energy + Delta-G solvation = -3716.969015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.76070 -38.86801 -36.60383 -36.43527 -34.30289 -34.04019 -32.86702 -30.85591 -29.91466 -28.98806 -27.08412 -25.55846 -24.60785 -23.42163 -22.46618 -20.95963 -20.42025 -19.98036 -18.75026 -17.31024 -16.86256 -16.63670 -16.49088 -15.55313 -15.13811 -15.03626 -14.71671 -14.39766 -14.27810 -14.19090 -13.94174 -13.62384 -13.40081 -13.13253 -12.94063 -12.85504 -12.70651 -12.06620 -11.82107 -11.56972 -11.51589 -11.46420 -11.24798 -11.21853 -11.16769 -10.94658 -10.75335 -10.42622 -10.35119 -10.08967 -9.88334 -9.84970 -9.76311 -9.62195 -8.72882 -8.56946 -8.43359 -6.62686 -5.84672 -3.43353 2.52574 2.82153 2.96974 3.31769 3.40996 3.45201 3.71082 4.36345 4.44916 4.46997 4.50120 4.56133 5.00272 5.05773 5.11996 5.22134 5.26475 5.27533 5.40792 5.45232 5.49283 5.56599 5.59915 5.67287 5.69146 5.78458 5.93368 6.04035 6.12952 6.15735 6.26124 6.30297 6.44993 6.56017 6.64339 6.68409 6.90301 6.99202 7.02783 7.19938 7.33616 7.53908 7.79320 7.92713 8.09965 8.46762 8.60533 9.13612 9.75549 10.33789 11.15179 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.003378 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.777480 B = 8286.504802 C = 9437.993521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.259 4.259 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.138 3.862 14 C 0.099 3.901 15 N -0.719 5.719 16 C 0.493 3.507 17 O -0.542 6.542 18 C 0.086 3.914 19 N -0.584 5.584 20 C 0.115 3.885 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.132 4.132 24 C 0.522 3.478 25 O -0.554 6.554 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.254 0.746 34 H 0.098 0.902 35 H 0.029 0.971 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.397 0.603 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 -10.184 -14.774 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.389 4.389 6 H 0.079 0.921 7 C -0.187 4.187 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.010 3.990 14 C -0.026 4.026 15 N -0.370 5.370 16 C 0.277 3.723 17 O -0.419 6.419 18 C -0.041 4.041 19 N -0.316 5.316 20 C -0.007 4.007 21 C -0.174 4.174 22 C -0.160 4.160 23 C -0.171 4.171 24 C 0.311 3.689 25 O -0.433 6.433 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.231 0.769 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.118 0.882 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.406 -10.504 -14.576 18.499 hybrid contribution 0.879 0.080 0.644 1.093 sum 5.286 -10.424 -13.931 18.185 Atomic orbital electron populations 1.21720 0.97326 1.00405 1.00997 1.22183 0.93834 1.00938 1.01542 1.20939 0.85047 0.92974 0.98921 1.43618 0.99458 1.84814 1.02098 1.19068 1.05575 1.20283 0.93959 0.92063 1.25175 1.00835 0.94570 0.98119 1.70008 1.25589 1.14827 1.42519 0.86344 0.81471 0.78469 0.81232 1.19989 1.21444 1.21571 1.21056 1.00299 0.91210 0.86402 1.22429 0.94839 1.02683 0.82648 1.46097 1.57996 1.08395 1.24543 1.20982 0.80284 0.85018 0.86052 1.90665 1.54832 1.26702 1.69710 1.21399 1.01916 0.86094 0.94728 1.46856 1.21450 1.17383 1.45893 1.21429 0.85389 0.92749 1.01178 1.21848 1.03072 0.95136 0.97379 1.21627 0.95298 1.02031 0.97054 1.21634 0.98988 0.93616 1.02905 1.20129 0.81696 0.88953 0.78160 1.90717 1.30950 1.60291 1.61295 0.93821 0.93201 0.93446 0.92959 0.92399 0.93579 0.94727 0.93599 0.88393 0.95296 0.93140 0.91915 0.76938 0.87633 0.86671 0.91526 0.90388 0.89762 0.90438 0.90568 0.91136 0.88155 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.15 -2.75 6.23 -26.73 -0.17 -2.92 16 3 C 0.15 3.13 5.72 -4.04 -0.02 3.11 16 4 N -0.58 -14.15 2.43 -173.24 -0.42 -14.57 16 5 C -0.26 -6.95 9.45 -15.06 -0.14 -7.09 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 8 N -0.89 -24.55 11.47 55.49 0.64 -23.92 16 9 Si 0.90 21.22 29.61 -169.99 -5.03 16.19 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.14 3.08 5.45 -4.05 -0.02 3.06 16 14 C 0.10 2.06 6.00 -4.05 -0.02 2.03 16 15 N -0.72 -12.22 5.56 -60.30 -0.33 -12.55 16 16 C 0.49 8.44 7.88 -10.99 -0.09 8.35 16 17 O -0.54 -11.42 16.42 5.56 0.09 -11.32 16 18 C 0.09 1.09 5.70 -5.19 -0.03 1.06 16 19 N -0.58 -7.25 2.30 -176.34 -0.41 -7.66 16 20 C 0.12 1.06 6.32 -4.48 -0.03 1.03 16 21 C -0.14 -1.04 6.02 -26.68 -0.16 -1.20 16 22 C -0.12 -0.83 6.02 -26.61 -0.16 -0.99 16 23 C -0.13 -1.26 6.04 -28.10 -0.17 -1.43 16 24 C 0.52 7.22 7.44 -11.87 -0.09 7.13 16 25 O -0.55 -9.89 16.18 5.55 0.09 -9.80 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 1.03 6.64 -51.93 -0.34 0.69 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.03 0.69 7.83 -51.93 -0.41 0.29 16 33 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.10 2.43 5.52 -51.93 -0.29 2.14 16 35 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 36 H 0.05 1.10 6.64 -51.93 -0.34 0.75 16 37 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.40 5.60 8.47 -40.82 -0.35 5.25 16 39 H 0.11 0.97 8.01 -51.93 -0.42 0.56 16 40 H 0.12 1.46 7.14 -51.93 -0.37 1.09 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 47 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -34.07 386.62 -8.76 -42.83 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.39 Total: 4.48 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -0.82 Total: 10.51 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.53 Total: -58.70 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: 0.18 Total: -21.13 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.07 -8.76 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753145555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.758 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds