Wall clock time and date at job start Tue Mar 31 2020 09:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47321 * 2 1 4 4 N 1.46498 * 109.46789 * 180.02562 * 3 2 1 5 5 C 1.36944 * 120.00128 * 275.30809 * 4 3 2 6 6 H 1.08000 * 119.99699 * 37.58200 * 5 4 3 7 7 C 1.38809 * 119.99869 * 217.57947 * 5 4 3 8 8 N 1.31614 * 120.00342 * 21.43902 * 7 5 4 9 9 Si 1.86808 * 119.99651 * 201.43151 * 7 5 4 10 10 H 1.48498 * 109.46922 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46685 * 120.00464 * 9 7 5 12 12 H 1.48495 * 109.47009 * 240.00089 * 9 7 5 13 13 C 1.46498 * 120.00068 * 95.31531 * 4 3 2 14 14 C 1.52994 * 109.47491 * 269.99615 * 13 4 3 15 15 N 1.46498 * 109.47491 * 179.97438 * 14 13 4 16 16 C 1.34774 * 119.99957 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00165 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00034 * 180.02562 * 16 15 14 19 19 N 1.46499 * 109.47459 * 179.97438 * 18 16 15 20 20 C 1.45751 * 117.94505 * 270.02039 * 19 18 16 21 21 C 1.52924 * 110.48681 * 160.92115 * 20 19 18 22 22 C 1.53174 * 108.62744 * 50.75043 * 21 20 19 23 23 C 1.53065 * 108.51129 * 292.41211 * 22 21 20 24 24 C 1.33349 * 117.94946 * 89.99272 * 19 18 16 25 25 O 1.21287 * 118.24572 * 2.23237 * 24 19 18 26 26 H 1.08994 * 109.47090 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46811 * 299.99619 * 1 2 3 28 28 H 1.09001 * 109.47165 * 59.99740 * 1 2 3 29 29 H 1.09006 * 109.46811 * 240.00380 * 2 1 3 30 30 H 1.09004 * 109.47343 * 120.00765 * 2 1 3 31 31 H 1.08998 * 109.46649 * 60.00637 * 3 2 1 32 32 H 1.08993 * 109.47503 * 300.00128 * 3 2 1 33 33 H 0.97006 * 120.00212 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47364 * 149.99199 * 13 4 3 35 35 H 1.09000 * 109.46947 * 29.99765 * 13 4 3 36 36 H 1.08999 * 109.47156 * 59.99456 * 14 13 4 37 37 H 1.09000 * 109.47147 * 300.00028 * 14 13 4 38 38 H 0.96999 * 119.99764 * 359.97438 * 15 14 13 39 39 H 1.08999 * 109.47356 * 59.98992 * 18 16 15 40 40 H 1.09000 * 109.46879 * 299.99605 * 18 16 15 41 41 H 1.08998 * 109.30314 * 281.23693 * 20 19 18 42 42 H 1.09004 * 109.30535 * 40.82032 * 20 19 18 43 43 H 1.09004 * 109.60426 * 170.50812 * 21 20 19 44 44 H 1.08998 * 109.60186 * 290.82890 * 21 20 19 45 45 H 1.09000 * 109.56864 * 172.68752 * 22 21 20 46 46 H 1.08999 * 109.68793 * 52.21290 * 22 21 20 47 47 H 1.09003 * 109.40192 * 288.84297 * 23 22 21 48 48 H 1.09007 * 109.40066 * 169.01647 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1903 1.3324 1.1799 6 1 3.8186 0.6868 1.9619 7 6 5.3625 2.0508 1.3715 8 7 5.6026 3.1236 0.6480 9 14 6.5992 1.4947 2.6565 10 1 6.0969 0.2699 3.3294 11 1 7.8978 1.2007 1.9989 12 1 6.7860 2.5713 3.6621 13 6 4.2370 1.5600 -1.2642 14 6 4.4918 0.1648 -1.8379 15 7 5.2232 0.2825 -3.1017 16 6 5.5593 -0.8255 -3.7915 17 8 5.2566 -1.9200 -3.3657 18 6 6.3122 -0.7045 -5.0913 19 7 6.5560 -2.0405 -5.6407 20 6 7.7848 -2.7234 -5.2560 21 6 7.6649 -4.2262 -5.5128 22 6 7.1788 -4.4397 -6.9496 23 6 5.7391 -3.9309 -7.0562 24 6 5.6396 -2.5558 -6.4610 25 8 4.6742 -1.8773 -6.7418 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9564 -0.8899 33 1 6.4216 3.6258 0.7821 34 1 5.1895 2.0596 -1.0872 35 1 3.6476 2.1422 -1.9726 36 1 3.5393 -0.3347 -2.0149 37 1 5.0811 -0.4173 -1.1294 38 1 5.4650 1.1579 -3.4424 39 1 7.2649 -0.2053 -4.9143 40 1 5.7230 -0.1220 -5.7996 41 1 8.6161 -2.3238 -5.8368 42 1 7.9732 -2.5562 -4.1954 43 1 8.6385 -4.6985 -5.3817 44 1 6.9506 -4.6608 -4.8136 45 1 7.2115 -5.5019 -7.1920 46 1 7.8159 -3.8857 -7.6390 47 1 5.0752 -4.6074 -6.5179 48 1 5.4450 -3.8936 -8.1051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753145555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:12 Heat of formation + Delta-G solvation = -86.828296 kcal Electronic energy + Delta-G solvation = -26612.377570 eV Core-core repulsion = 22894.444054 eV Total energy + Delta-G solvation = -3717.933516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80565 -40.25916 -38.26917 -37.50313 -35.76939 -35.02260 -34.63222 -32.67329 -30.78480 -30.38014 -28.39374 -27.37016 -25.46833 -24.98238 -23.37736 -22.60623 -21.99334 -21.52296 -19.59339 -18.89370 -18.17066 -17.88700 -17.61367 -17.01276 -16.74415 -16.37483 -16.22751 -15.85412 -15.63727 -15.16548 -15.12493 -14.80981 -14.49231 -14.48474 -14.30626 -14.28587 -14.12498 -13.37294 -13.17768 -13.03583 -12.94308 -12.71973 -12.66136 -12.52482 -12.25067 -12.24362 -12.04440 -11.91546 -11.87149 -11.83452 -11.69932 -11.38738 -11.16631 -10.76083 -10.55510 -10.06403 -9.79777 -8.61285 -7.87444 -5.50779 1.41436 1.45730 1.46502 1.56203 1.59288 1.88928 2.35089 2.51169 3.19917 3.57764 3.65246 3.80774 3.86386 3.91403 3.92987 4.16051 4.18967 4.30231 4.33702 4.36191 4.49165 4.51225 4.55071 4.60874 4.64368 4.70022 4.81937 4.85198 4.92491 4.95097 5.02821 5.11806 5.12835 5.19159 5.22086 5.27135 5.37108 5.39197 5.39306 5.58075 5.63754 5.71467 6.38985 6.42927 6.56191 7.07085 7.12380 7.23599 7.79649 8.33091 9.08827 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.003378 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.777480 B = 8286.504802 C = 9437.993521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.597 5.597 5 C -0.272 4.272 6 H 0.050 0.950 7 C -0.026 4.026 8 N -0.910 5.910 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.147 3.853 14 C 0.123 3.877 15 N -0.712 5.712 16 C 0.489 3.511 17 O -0.586 6.586 18 C 0.091 3.909 19 N -0.585 5.585 20 C 0.106 3.894 21 C -0.135 4.135 22 C -0.113 4.113 23 C -0.130 4.130 24 C 0.509 3.491 25 O -0.605 6.605 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.030 0.970 38 H 0.413 0.587 39 H 0.148 0.852 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.052 0.948 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -10.933 -16.071 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.403 4.403 6 H 0.068 0.932 7 C -0.225 4.225 8 N -0.553 5.553 9 Si 0.780 3.220 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.213 1.213 13 C 0.019 3.981 14 C -0.004 4.004 15 N -0.365 5.365 16 C 0.275 3.725 17 O -0.466 6.466 18 C -0.036 4.036 19 N -0.315 5.315 20 C -0.015 4.015 21 C -0.173 4.173 22 C -0.150 4.150 23 C -0.170 4.170 24 C 0.299 3.701 25 O -0.487 6.487 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.250 0.750 39 H 0.165 0.835 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.131 0.869 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.105 0.895 47 H 0.114 0.886 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.719 -11.251 -15.886 20.289 hybrid contribution 0.450 0.315 1.056 1.190 sum 6.170 -10.936 -14.830 19.432 Atomic orbital electron populations 1.21654 0.94194 1.01775 1.02048 1.22009 0.96493 0.98867 1.00035 1.21045 0.83516 0.94408 0.99050 1.43850 1.00798 1.85091 1.02068 1.19178 1.06358 1.20055 0.94675 0.93221 1.25760 1.02030 0.94640 1.00029 1.70091 1.25939 1.15481 1.43774 0.85470 0.79372 0.77933 0.79219 1.19975 1.21218 1.21264 1.20916 0.99289 0.91751 0.86097 1.21868 0.94003 1.00928 0.83584 1.45949 1.57561 1.09620 1.23331 1.21860 0.79561 0.84005 0.87062 1.90642 1.56545 1.28323 1.71091 1.21470 1.03199 0.87096 0.91836 1.47098 1.22118 1.17366 1.44939 1.21738 0.84844 0.93900 1.01012 1.21877 1.04001 0.93973 0.97448 1.21623 0.93192 1.03539 0.96637 1.21699 1.01234 0.90949 1.03098 1.20981 0.80994 0.90117 0.77984 1.90682 1.32933 1.61867 1.63265 0.92321 0.92313 0.92228 0.94129 0.94214 0.94414 0.93456 0.93579 0.90444 0.94047 0.94400 0.95100 0.75036 0.83469 0.86450 0.88114 0.91682 0.86900 0.92906 0.88283 0.89548 0.88585 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.91 71.98 0.71 -3.38 16 2 C -0.13 -5.12 6.23 30.59 0.19 -4.93 16 3 C 0.15 6.20 5.72 86.38 0.49 6.70 16 4 N -0.60 -29.70 2.43 -702.02 -1.71 -31.41 16 5 C -0.27 -14.92 9.45 84.03 0.79 -14.12 16 6 H 0.05 2.78 7.92 -2.91 -0.02 2.76 16 7 C -0.03 -1.43 4.95 84.86 0.42 -1.01 16 8 N -0.91 -50.72 11.47 21.65 0.25 -50.47 16 9 Si 0.95 43.99 29.61 68.60 2.03 46.02 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.15 6.67 5.45 86.38 0.47 7.14 16 14 C 0.12 5.23 6.00 86.38 0.52 5.75 16 15 N -0.71 -24.32 5.56 -463.08 -2.57 -26.89 16 16 C 0.49 16.80 7.88 87.66 0.69 17.49 16 17 O -0.59 -25.34 16.42 -3.02 -0.05 -25.39 16 18 C 0.09 2.20 5.70 85.63 0.49 2.68 16 19 N -0.58 -13.82 2.30 -830.99 -1.91 -15.74 16 20 C 0.11 1.72 6.32 86.50 0.55 2.27 16 21 C -0.14 -1.75 6.02 30.63 0.18 -1.56 16 22 C -0.11 -1.18 6.02 30.67 0.18 -0.99 16 23 C -0.13 -2.32 6.04 29.70 0.18 -2.14 16 24 C 0.51 13.83 7.44 87.71 0.65 14.48 16 25 O -0.61 -21.91 16.18 -3.05 -0.05 -21.96 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 1.62 6.64 -2.38 -0.02 1.61 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 32 H 0.05 1.88 7.83 -2.39 -0.02 1.86 16 33 H 0.25 13.61 8.31 -92.70 -0.77 12.84 16 34 H 0.08 3.91 5.52 -2.39 -0.01 3.89 16 35 H 0.04 1.75 7.86 -2.39 -0.02 1.73 16 36 H 0.04 1.71 6.64 -2.39 -0.02 1.69 16 37 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.41 11.41 8.47 -92.71 -0.79 10.62 16 39 H 0.15 2.30 8.01 -2.39 -0.02 2.28 16 40 H 0.12 2.87 7.14 -2.39 -0.02 2.85 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.24 8.11 -2.38 -0.02 1.22 16 43 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 44 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 45 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.09 0.69 8.13 -2.39 -0.02 0.67 16 47 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -76.38 386.62 2.66 -73.71 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.15 Total: 23.74 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 6.53 Total: 28.38 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -5.95 Total: -124.51 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.10 Total: -47.35 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -76.38 2.66 -73.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753145555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.114 kcal (2) G-P(sol) polarization free energy of solvation -76.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds