Wall clock time and date at job start Tue Mar 31 2020 11:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47056 * 2 1 4 4 C 1.52996 * 109.47132 * 239.99759 * 2 1 3 5 5 N 1.46899 * 109.47114 * 64.99735 * 4 2 1 6 6 C 1.46902 * 110.99776 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.46841 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00370 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.37092 * 119.99998 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99760 * 0.02562 * 10 9 7 12 12 C 1.38953 * 120.00288 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99586 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00073 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47410 * 59.99708 * 14 12 10 16 16 H 1.48500 * 109.47070 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47204 * 299.99510 * 14 12 10 18 18 C 1.53002 * 109.46905 * 119.99710 * 2 1 3 19 19 N 1.46507 * 109.47041 * 294.99928 * 18 2 1 20 20 C 1.34772 * 119.99703 * 180.02562 * 19 18 2 21 21 O 1.21277 * 120.00272 * 359.97438 * 20 19 18 22 22 C 1.50702 * 120.00026 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.47172 * 185.47283 * 22 20 19 24 24 C 1.52998 * 115.56286 * 279.21747 * 23 22 20 25 25 C 1.53004 * 117.49963 * 64.91232 * 23 22 20 26 26 C 1.53007 * 60.00136 * 107.48917 * 25 23 22 27 27 H 1.09006 * 109.47471 * 300.00593 * 1 2 3 28 28 H 1.08999 * 109.47147 * 60.00414 * 1 2 3 29 29 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47041 * 184.99951 * 4 2 1 31 31 H 1.08999 * 109.46867 * 304.99777 * 4 2 1 32 32 H 1.00901 * 110.99791 * 56.05341 * 5 4 2 33 33 H 1.08997 * 109.47485 * 300.00366 * 6 5 4 34 34 H 1.09003 * 109.46751 * 60.00453 * 6 5 4 35 35 H 0.96996 * 119.99850 * 0.02562 * 9 7 6 36 36 H 0.97003 * 119.99912 * 180.02562 * 13 12 10 37 37 H 1.09006 * 109.46691 * 175.00350 * 18 2 1 38 38 H 1.08988 * 109.47040 * 55.00024 * 18 2 1 39 39 H 0.97001 * 119.99755 * 0.02562 * 19 18 2 40 40 H 1.09004 * 109.47174 * 65.46553 * 22 20 19 41 41 H 1.09010 * 109.46906 * 305.47127 * 22 20 19 42 42 H 1.08994 * 109.47582 * 200.54448 * 24 23 22 43 43 H 1.09004 * 109.46633 * 320.54443 * 24 23 22 44 44 H 1.08997 * 109.46854 * 80.53912 * 24 23 22 45 45 H 1.08994 * 117.49541 * 359.97438 * 25 23 22 46 46 H 1.08994 * 117.49271 * 214.97476 * 25 23 22 47 47 H 1.09000 * 117.50072 * 107.49220 * 26 25 23 48 48 H 1.09005 * 117.49662 * 252.51339 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6513 0.0373 -2.4456 6 6 2.1257 -0.6267 -3.6671 7 6 1.7097 0.1790 -4.8707 8 8 1.0803 1.2056 -4.7254 9 7 2.0378 -0.2407 -6.1088 10 6 1.6598 0.4925 -7.2038 11 1 1.0994 1.4066 -7.0743 12 6 1.9977 0.0596 -8.4802 13 7 2.6800 -1.0525 -8.6377 14 14 1.4832 1.0590 -9.9721 15 1 2.0755 2.4180 -9.8857 16 1 1.9631 0.3880 -11.2068 17 1 0.0025 1.1658 -10.0097 18 6 2.0399 -0.7212 1.2493 19 7 1.6523 0.0355 2.4424 20 6 1.9963 -0.4129 3.6659 21 8 2.6263 -1.4430 3.7793 22 6 1.5971 0.3652 4.8933 23 6 2.2223 -0.2799 6.1318 24 6 1.4860 -1.5030 6.6819 25 6 3.7483 -0.2654 6.2418 26 6 2.9078 0.6445 7.1400 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1263 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2950 32 1 1.9882 0.9872 -2.3967 33 1 3.2126 -0.7039 -3.6400 34 1 1.6920 -1.6248 -3.7299 35 1 2.5415 -1.0615 -6.2250 36 1 2.9162 -1.3545 -9.5287 37 1 3.1263 -0.7994 1.2057 38 1 1.6053 -1.7196 1.2952 39 1 1.1482 0.8592 2.3517 40 1 0.5114 0.3599 4.9897 41 1 1.9488 1.3930 4.8023 42 1 1.7704 -1.6609 7.7222 43 1 0.4103 -1.3376 6.6204 44 1 1.7525 -2.3819 6.0950 45 1 4.3068 0.2035 5.4317 46 1 4.2275 -1.1272 6.7061 47 1 2.8343 0.3813 8.1952 48 1 2.9134 1.7123 6.9209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753624792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:51 Heat of formation + Delta-G solvation = -66.856521 kcal Electronic energy + Delta-G solvation = -24803.755040 eV Core-core repulsion = 21086.687565 eV Total energy + Delta-G solvation = -3717.067475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.26310 -38.46491 -38.04410 -36.99247 -34.84753 -33.86078 -32.41895 -31.20120 -30.10102 -28.53028 -27.39909 -26.41856 -24.74670 -23.10559 -22.73985 -21.02891 -20.63367 -19.38363 -19.08852 -17.88480 -17.17079 -16.49860 -16.09543 -15.86875 -15.70466 -15.30914 -14.73601 -14.63205 -14.47055 -14.27727 -14.00652 -13.63666 -13.47069 -13.28562 -13.07956 -12.75748 -12.59205 -12.42765 -12.24667 -11.90172 -11.83823 -11.67647 -11.56632 -11.51753 -11.14049 -11.05036 -10.97729 -10.88107 -10.62593 -10.44502 -10.25005 -10.21430 -9.78612 -9.50261 -9.27182 -8.46743 -8.06113 -7.96047 -6.41756 -3.82720 2.44899 2.84396 3.19956 3.25710 3.30023 3.52089 3.90834 4.09110 4.23831 4.30727 4.38610 4.50091 4.63065 4.70937 4.74049 4.87066 4.96447 5.08876 5.17070 5.19746 5.25831 5.31604 5.34137 5.47051 5.50339 5.56215 5.59361 5.65250 5.67275 5.70836 5.76059 5.82810 5.87028 5.88968 5.97087 5.98420 6.09670 6.24712 6.26777 6.38931 7.19352 7.26216 7.54734 7.64348 8.02484 8.05883 8.61130 9.17530 9.54187 10.05615 10.75868 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.048785 B = 0.001647 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.805628 B =16993.563007 C =17135.106155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.125 3.875 19 N -0.731 5.731 20 C 0.510 3.490 21 O -0.532 6.532 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.157 4.157 26 C -0.178 4.178 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.348 0.652 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 0.608 28.233 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.094 0.906 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.001 3.999 19 N -0.383 5.383 20 C 0.297 3.703 21 O -0.408 6.408 22 C -0.145 4.145 23 C -0.112 4.112 24 C -0.170 4.170 25 C -0.194 4.194 26 C -0.215 4.215 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.167 0.833 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.226 0.774 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.235 0.765 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.786 0.160 28.173 28.185 hybrid contribution 0.849 0.504 -1.000 1.405 sum 0.064 0.664 27.174 27.182 Atomic orbital electron populations 1.21755 0.93742 1.02149 1.02056 1.21340 0.97607 0.99915 0.93010 0.90586 1.21898 0.97328 0.97980 0.89244 1.60053 1.64127 1.05827 0.99797 1.21668 0.97750 0.98669 0.90122 1.19808 0.85555 0.87936 0.84088 1.90514 1.44156 1.26432 1.85745 1.41859 1.49452 1.24246 1.04446 1.19659 1.33011 1.06729 0.83649 0.87974 1.25264 0.96893 0.96646 0.99111 1.69607 1.38770 1.21737 1.24174 0.85909 0.79052 0.79367 0.79829 1.19941 1.20977 1.19883 1.21370 0.99905 0.95433 0.83212 1.46067 1.58281 1.28059 1.05938 1.20633 0.79382 0.85924 0.84407 1.90705 1.39222 1.24228 1.86612 1.21255 1.02531 0.99484 0.91275 1.21037 0.95117 0.98801 0.96251 1.21313 0.99236 0.96312 1.00114 1.22870 0.92894 1.01734 1.01859 1.23225 1.04726 0.97003 0.96593 0.93721 0.90440 0.92814 0.95308 0.90748 0.83270 0.93885 0.89585 0.77448 0.91817 0.91626 0.91311 0.76544 0.88324 0.89011 0.92608 0.92496 0.91427 0.89147 0.88795 0.88722 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.95 37.16 0.33 -1.05 16 2 C -0.10 -0.95 2.57 -90.62 -0.23 -1.18 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.07 0.76 5.07 -3.83 -0.02 0.74 16 5 N -0.67 -10.27 5.58 -115.06 -0.64 -10.91 16 6 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 7 C 0.44 10.35 7.82 -10.98 -0.09 10.27 16 8 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 9 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 10 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 11 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 14 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.12 1.16 5.07 -4.04 -0.02 1.14 16 19 N -0.73 -5.84 5.28 -60.29 -0.32 -6.16 16 20 C 0.51 4.82 7.68 -10.99 -0.08 4.74 16 21 O -0.53 -7.05 15.16 5.56 0.08 -6.97 16 22 C -0.11 -0.68 5.64 -27.88 -0.16 -0.84 16 23 C -0.11 -0.83 1.59 -154.51 -0.25 -1.08 16 24 C -0.11 -0.83 9.69 37.16 0.36 -0.47 16 25 C -0.16 -1.26 9.17 -26.73 -0.24 -1.50 16 26 C -0.18 -1.11 9.82 -26.72 -0.26 -1.37 16 27 H 0.04 0.35 7.18 -51.93 -0.37 -0.02 16 28 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.35 5.53 8.43 -39.29 -0.33 5.20 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.71 8.14 -51.94 -0.42 0.28 16 39 H 0.40 2.29 7.65 -40.82 -0.31 1.98 16 40 H 0.10 0.49 8.06 -51.93 -0.42 0.07 16 41 H 0.09 0.44 7.94 -51.92 -0.41 0.03 16 42 H 0.05 0.36 7.94 -51.93 -0.41 -0.06 16 43 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 44 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 48 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -32.75 397.26 -8.48 -41.23 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -8.39 Total: 12.41 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.93 Total: 2.21 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.29 Total: -55.23 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.17 Total: -22.62 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.75 -8.48 -41.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.625 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds