Wall clock time and date at job start Tue Mar 31 2020 10:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47128 * 2 1 4 4 C 1.46497 * 120.00625 * 270.00250 * 3 2 1 5 5 C 1.53000 * 109.47375 * 270.00315 * 4 3 2 6 6 N 1.46895 * 109.47196 * 179.97438 * 5 4 3 7 7 C 1.46902 * 111.00021 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47219 * 179.97438 * 7 6 5 9 9 O 1.21294 * 120.00328 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99889 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99878 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00459 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99896 * 180.02562 * 11 10 8 14 14 N 1.31413 * 119.99964 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99861 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47622 * 59.99511 * 15 13 11 17 17 H 1.48505 * 109.46988 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46942 * 299.99491 * 15 13 11 19 19 C 1.34780 * 119.99415 * 90.00062 * 3 2 1 20 20 O 1.21287 * 119.99572 * 179.97438 * 19 3 2 21 21 C 1.50693 * 120.00156 * 0.02562 * 19 3 2 22 22 C 1.53786 * 113.61375 * 179.97438 * 21 19 3 23 23 C 1.53778 * 87.08393 * 220.01947 * 22 21 19 24 24 C 1.52997 * 113.61679 * 139.98215 * 23 22 21 25 25 C 1.53783 * 87.17189 * 25.39034 * 23 22 21 26 26 H 1.08994 * 109.47436 * 299.99348 * 1 2 3 27 27 H 1.09006 * 109.47516 * 59.99786 * 1 2 3 28 28 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47372 * 240.00566 * 2 1 3 30 30 H 1.08995 * 109.47438 * 120.00673 * 2 1 3 31 31 H 1.09007 * 109.46708 * 30.00149 * 4 3 2 32 32 H 1.08996 * 109.47400 * 149.99303 * 4 3 2 33 33 H 1.09004 * 109.46798 * 300.00042 * 5 4 3 34 34 H 1.09001 * 109.47247 * 59.99042 * 5 4 3 35 35 H 1.00901 * 111.00266 * 56.04600 * 6 5 4 36 36 H 1.09001 * 109.46882 * 300.00026 * 7 6 5 37 37 H 1.09003 * 109.47023 * 59.99828 * 7 6 5 38 38 H 0.96999 * 120.00583 * 0.02562 * 10 8 7 39 39 H 0.97001 * 119.99898 * 180.02562 * 14 13 11 40 40 H 1.09000 * 112.90874 * 311.24848 * 21 19 3 41 41 H 1.09006 * 113.61229 * 105.46915 * 22 21 19 42 42 H 1.08996 * 113.61286 * 334.57137 * 22 21 19 43 43 H 1.09007 * 113.61285 * 270.80566 * 23 22 21 44 44 H 1.09002 * 109.47153 * 61.52913 * 24 23 22 45 45 H 1.09001 * 109.46832 * 301.53104 * 24 23 22 46 46 H 1.09004 * 109.47261 * 181.53085 * 24 23 22 47 47 H 1.09000 * 113.61048 * 89.16040 * 25 23 22 48 48 H 1.09003 * 113.61260 * 220.06009 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.7074 1.8316 -1.7104 6 7 3.9520 2.5237 -2.9828 7 6 5.3329 2.3152 -3.4385 8 6 5.5456 3.0378 -4.7437 9 8 4.6366 3.6653 -5.2448 10 7 6.7464 2.9878 -5.3537 11 6 6.9401 3.6457 -6.5408 12 1 6.1307 4.2044 -6.9870 13 6 8.1780 3.5937 -7.1700 14 7 9.1631 2.9143 -6.6269 15 14 8.4421 4.4906 -8.7871 16 1 8.1989 5.9427 -8.5934 17 1 9.8382 4.2802 -9.2476 18 1 7.4995 3.9624 -9.8058 19 6 2.2429 2.0165 1.1673 20 8 2.6476 3.1598 1.1673 21 6 1.9923 1.3058 2.4723 22 6 2.2969 2.1656 3.7104 23 6 2.8971 0.8999 4.3446 24 6 4.1769 1.1613 5.1412 25 6 3.1538 0.3970 2.9141 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.5815 1.6879 -2.0283 32 1 2.0954 3.1411 -1.1382 33 1 4.3882 2.2156 -0.9507 34 1 3.8744 0.7623 -1.8408 35 1 3.7417 3.5075 -2.9056 36 1 6.0247 2.7033 -2.6909 37 1 5.5117 1.2493 -3.5804 38 1 7.4736 2.4864 -4.9529 39 1 10.0273 2.8783 -7.0659 40 1 1.0189 0.8165 2.5089 41 1 1.4044 2.5284 4.2204 42 1 3.0295 2.9515 3.5267 43 1 2.1712 0.3006 4.8943 44 1 3.9593 1.8398 5.9661 45 1 4.9255 1.6108 4.4888 46 1 4.5578 0.2195 5.5363 47 1 4.1212 0.6985 2.5124 48 1 2.9522 -0.6661 2.7823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754040726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:16 Heat of formation + Delta-G solvation = -61.012288 kcal Electronic energy + Delta-G solvation = -25645.568413 eV Core-core repulsion = 21928.754363 eV Total energy + Delta-G solvation = -3716.814050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83948 -38.49679 -38.14394 -36.46396 -35.24604 -33.81517 -31.48169 -31.13209 -30.50027 -28.96088 -26.35263 -26.00954 -24.76350 -23.90188 -23.23606 -21.90976 -19.90469 -19.31492 -18.89653 -17.86586 -17.46254 -16.53844 -16.22274 -15.91217 -15.46746 -15.21797 -14.64940 -14.46689 -14.21529 -14.04619 -13.82561 -13.79551 -13.51785 -13.22664 -13.16060 -12.90249 -12.79760 -12.54772 -12.28022 -12.08073 -11.97690 -11.64516 -11.50023 -11.46597 -11.43416 -11.18587 -11.07508 -10.94490 -10.83220 -10.58701 -10.42276 -10.19127 -9.78959 -9.47611 -8.92473 -8.42596 -8.04989 -7.93507 -6.39218 -3.79990 2.43026 2.74024 3.22223 3.27468 3.32247 3.93777 4.09532 4.13516 4.16268 4.25307 4.37318 4.45900 4.55244 4.67806 4.84137 4.99280 5.02336 5.06880 5.12122 5.21772 5.22598 5.29672 5.30877 5.35049 5.40801 5.42881 5.45120 5.49641 5.54779 5.64888 5.76389 5.78784 5.82501 5.88024 5.90951 5.95339 6.02173 6.13620 6.27048 6.37638 7.20147 7.21420 7.57434 7.66945 8.02665 8.08669 8.63975 9.20209 9.56867 10.08511 10.78557 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.002181 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.994554 B =12832.432466 C =13524.842951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.610 5.610 4 C 0.116 3.884 5 C 0.047 3.953 6 N -0.667 5.667 7 C 0.052 3.948 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.932 3.068 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.522 3.478 20 O -0.536 6.536 21 C -0.139 4.139 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.143 4.143 25 C -0.119 4.119 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.351 0.649 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.086 0.914 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.580 -10.387 22.731 28.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.343 5.343 4 C -0.007 4.007 5 C -0.083 4.083 6 N -0.300 5.300 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.310 3.690 20 O -0.412 6.412 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.133 4.133 24 C -0.200 4.200 25 C -0.157 4.157 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.105 0.895 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.024 -9.882 21.921 27.836 hybrid contribution 1.118 0.472 -0.074 1.216 sum -12.906 -9.411 21.847 27.063 Atomic orbital electron populations 1.22224 0.95791 1.02375 1.02679 1.21622 0.94501 0.82342 1.03586 1.47981 1.65801 1.14494 1.06004 1.21400 0.96480 0.98700 0.84090 1.22246 0.96026 0.99587 0.90488 1.60033 1.23656 1.18388 1.27875 1.21653 0.89109 1.01180 0.96090 1.19795 0.83970 0.86229 0.87317 1.90520 1.42344 1.46588 1.67251 1.41854 1.10620 1.46206 1.21383 1.19662 0.97845 1.27659 0.97717 0.87959 1.25269 0.95177 0.97660 0.99890 1.69608 1.03145 1.41493 1.40164 0.85907 0.77145 0.79726 0.81371 1.19912 1.20994 1.19878 1.20558 0.76844 0.86421 0.85131 1.90708 1.45321 1.17923 1.87262 1.22802 1.01108 0.99498 0.92577 1.22920 1.01670 0.96874 0.93777 1.22466 0.98187 0.97692 0.94945 1.21720 0.96719 1.01505 1.00086 1.23011 0.97777 0.98795 0.96100 0.92549 0.91932 0.91365 0.89866 0.90186 0.89459 0.89858 0.95233 0.91221 0.82999 0.93856 0.89656 0.77456 0.91839 0.87086 0.91136 0.88589 0.89078 0.92393 0.92381 0.92587 0.89517 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.17 37.15 0.38 -0.62 16 2 C 0.10 0.69 5.82 -4.05 -0.02 0.67 16 3 N -0.61 -6.13 2.47 -173.69 -0.43 -6.56 16 4 C 0.12 1.39 5.67 -4.04 -0.02 1.37 16 5 C 0.05 0.64 6.01 -3.83 -0.02 0.62 16 6 N -0.67 -11.42 6.13 -115.06 -0.70 -12.12 16 7 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 8 C 0.44 10.78 7.82 -10.99 -0.09 10.70 16 9 O -0.58 -16.28 15.78 5.55 0.09 -16.19 16 10 N -0.56 -14.68 5.29 -10.96 -0.06 -14.74 16 11 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 12 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 13 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 14 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 15 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.52 6.01 7.21 -10.99 -0.08 5.93 16 20 O -0.54 -8.44 15.48 5.55 0.09 -8.35 16 21 C -0.14 -1.09 2.79 -90.87 -0.25 -1.35 16 22 C -0.11 -0.93 6.97 -25.92 -0.18 -1.11 16 23 C -0.11 -0.72 4.35 -89.81 -0.39 -1.11 16 24 C -0.14 -0.90 9.70 37.16 0.36 -0.54 16 25 C -0.12 -0.80 6.48 -25.83 -0.17 -0.97 16 26 H 0.06 0.33 7.24 -51.93 -0.38 -0.05 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 30 H 0.08 0.42 5.79 -51.93 -0.30 0.12 16 31 H 0.09 0.97 8.07 -51.92 -0.42 0.55 16 32 H 0.08 1.15 7.42 -51.93 -0.39 0.76 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.35 6.33 8.43 -39.29 -0.33 6.00 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.11 0.67 6.88 -51.93 -0.36 0.31 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.99 7.39 -51.93 -0.38 0.61 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.42 7.98 -51.93 -0.41 0.00 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.71 7.94 -51.93 -0.41 0.30 16 48 H 0.07 0.38 7.69 -51.93 -0.40 -0.02 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -33.58 391.08 -8.44 -42.02 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -8.26 Total: 11.55 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.76 Total: 6.36 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.47 Total: -57.65 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.17 Total: -24.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.58 -8.44 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754040726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.992 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds