Wall clock time and date at job start Tue Mar 31 2020 10:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47128 * 2 1 4 4 C 1.46497 * 120.00625 * 270.00250 * 3 2 1 5 5 C 1.53000 * 109.47375 * 270.00315 * 4 3 2 6 6 N 1.46895 * 109.47196 * 179.97438 * 5 4 3 7 7 C 1.46902 * 111.00021 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47219 * 179.97438 * 7 6 5 9 9 O 1.21294 * 120.00328 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99889 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99878 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00459 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99896 * 180.02562 * 11 10 8 14 14 N 1.31413 * 119.99964 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99861 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47622 * 59.99511 * 15 13 11 17 17 H 1.48505 * 109.46988 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46942 * 299.99491 * 15 13 11 19 19 C 1.34780 * 119.99415 * 90.00062 * 3 2 1 20 20 O 1.21287 * 119.99572 * 179.97438 * 19 3 2 21 21 C 1.50693 * 120.00156 * 0.02562 * 19 3 2 22 22 C 1.53786 * 113.61375 * 179.97438 * 21 19 3 23 23 C 1.53778 * 87.08393 * 220.01947 * 22 21 19 24 24 C 1.52997 * 113.61679 * 139.98215 * 23 22 21 25 25 C 1.53783 * 87.17189 * 25.39034 * 23 22 21 26 26 H 1.08994 * 109.47436 * 299.99348 * 1 2 3 27 27 H 1.09006 * 109.47516 * 59.99786 * 1 2 3 28 28 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47372 * 240.00566 * 2 1 3 30 30 H 1.08995 * 109.47438 * 120.00673 * 2 1 3 31 31 H 1.09007 * 109.46708 * 30.00149 * 4 3 2 32 32 H 1.08996 * 109.47400 * 149.99303 * 4 3 2 33 33 H 1.09004 * 109.46798 * 300.00042 * 5 4 3 34 34 H 1.09001 * 109.47247 * 59.99042 * 5 4 3 35 35 H 1.00901 * 111.00266 * 56.04600 * 6 5 4 36 36 H 1.09001 * 109.46882 * 300.00026 * 7 6 5 37 37 H 1.09003 * 109.47023 * 59.99828 * 7 6 5 38 38 H 0.96999 * 120.00583 * 0.02562 * 10 8 7 39 39 H 0.97001 * 119.99898 * 180.02562 * 14 13 11 40 40 H 1.09000 * 112.90874 * 311.24848 * 21 19 3 41 41 H 1.09006 * 113.61229 * 105.46915 * 22 21 19 42 42 H 1.08996 * 113.61286 * 334.57137 * 22 21 19 43 43 H 1.09007 * 113.61285 * 270.80566 * 23 22 21 44 44 H 1.09002 * 109.47153 * 61.52913 * 24 23 22 45 45 H 1.09001 * 109.46832 * 301.53104 * 24 23 22 46 46 H 1.09004 * 109.47261 * 181.53085 * 24 23 22 47 47 H 1.09000 * 113.61048 * 89.16040 * 25 23 22 48 48 H 1.09003 * 113.61260 * 220.06009 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.7074 1.8316 -1.7104 6 7 3.9520 2.5237 -2.9828 7 6 5.3329 2.3152 -3.4385 8 6 5.5456 3.0378 -4.7437 9 8 4.6366 3.6653 -5.2448 10 7 6.7464 2.9878 -5.3537 11 6 6.9401 3.6457 -6.5408 12 1 6.1307 4.2044 -6.9870 13 6 8.1780 3.5937 -7.1700 14 7 9.1631 2.9143 -6.6269 15 14 8.4421 4.4906 -8.7871 16 1 8.1989 5.9427 -8.5934 17 1 9.8382 4.2802 -9.2476 18 1 7.4995 3.9624 -9.8058 19 6 2.2429 2.0165 1.1673 20 8 2.6476 3.1598 1.1673 21 6 1.9923 1.3058 2.4723 22 6 2.2969 2.1656 3.7104 23 6 2.8971 0.8999 4.3446 24 6 4.1769 1.1613 5.1412 25 6 3.1538 0.3970 2.9141 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.5815 1.6879 -2.0283 32 1 2.0954 3.1411 -1.1382 33 1 4.3882 2.2156 -0.9507 34 1 3.8744 0.7623 -1.8408 35 1 3.7417 3.5075 -2.9056 36 1 6.0247 2.7033 -2.6909 37 1 5.5117 1.2493 -3.5804 38 1 7.4736 2.4864 -4.9529 39 1 10.0273 2.8783 -7.0659 40 1 1.0189 0.8165 2.5089 41 1 1.4044 2.5284 4.2204 42 1 3.0295 2.9515 3.5267 43 1 2.1712 0.3006 4.8943 44 1 3.9593 1.8398 5.9661 45 1 4.9255 1.6108 4.4888 46 1 4.5578 0.2195 5.5363 47 1 4.1212 0.6985 2.5124 48 1 2.9522 -0.6661 2.7823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754040726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:15 Heat of formation + Delta-G solvation = -84.400004 kcal Electronic energy + Delta-G solvation = -25646.582581 eV Core-core repulsion = 21928.754363 eV Total energy + Delta-G solvation = -3717.828217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61193 -40.20232 -39.08101 -37.51269 -36.52110 -35.81761 -33.31467 -32.26209 -31.08355 -30.01464 -27.84005 -26.63805 -26.09199 -24.97770 -24.09536 -22.91072 -21.18081 -20.44714 -19.97830 -19.70459 -18.26576 -17.89389 -17.34630 -17.10419 -16.53146 -16.51990 -16.05697 -15.95612 -15.43079 -15.26930 -14.90845 -14.79844 -14.47278 -14.29116 -14.05217 -13.80168 -13.60269 -13.52303 -13.43781 -13.36403 -13.14805 -12.95891 -12.76502 -12.60865 -12.45138 -12.23225 -12.13055 -12.09697 -11.94918 -11.73971 -11.52534 -11.42723 -11.11135 -10.64774 -10.42334 -10.04709 -9.75730 -9.47364 -8.48502 -5.97782 1.38912 1.40752 1.52073 1.56815 1.91044 2.01185 2.28644 2.94661 3.18096 3.43527 3.51245 3.57406 3.69026 3.80974 3.91926 4.03522 4.10515 4.17985 4.26699 4.38979 4.44015 4.45672 4.48931 4.54034 4.60437 4.64118 4.76849 4.80878 4.83946 4.86907 4.88996 4.92687 4.96373 5.01346 5.11904 5.19908 5.37325 5.38703 5.40059 5.50487 5.62674 5.80710 6.03028 6.23483 6.40821 6.56994 7.09576 7.16657 7.52296 8.07420 8.68748 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.002181 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.994554 B =12832.432466 C =13524.842951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.605 5.605 4 C 0.122 3.878 5 C 0.058 3.942 6 N -0.675 5.675 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.272 1.272 17 H -0.269 1.269 18 H -0.270 1.270 19 C 0.514 3.486 20 O -0.590 6.590 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.103 4.103 24 C -0.145 4.145 25 C -0.115 4.115 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.088 0.912 35 H 0.342 0.658 36 H 0.059 0.941 37 H 0.109 0.891 38 H 0.397 0.603 39 H 0.279 0.721 40 H 0.140 0.860 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 -12.798 23.666 30.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.337 5.337 4 C -0.002 4.002 5 C -0.073 4.073 6 N -0.307 5.307 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.195 1.195 19 C 0.304 3.696 20 O -0.470 6.470 21 C -0.153 4.153 22 C -0.163 4.163 23 C -0.121 4.121 24 C -0.202 4.202 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.107 0.893 35 H 0.160 0.840 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.157 0.843 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.134 0.866 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.542 -12.356 22.878 29.792 hybrid contribution 1.252 1.213 -0.330 1.774 sum -13.290 -11.144 22.548 28.447 Atomic orbital electron populations 1.22195 0.94865 1.03578 1.02044 1.21920 0.95224 0.80260 1.05062 1.48094 1.65055 1.15712 1.04824 1.21205 0.95744 0.97779 0.85466 1.22241 0.96654 0.99946 0.88412 1.60066 1.22645 1.18113 1.29914 1.21527 0.90435 1.01602 0.93060 1.20785 0.82791 0.85353 0.88599 1.90488 1.43433 1.48205 1.68782 1.41919 1.11388 1.46394 1.21165 1.19652 0.98118 1.29381 0.99410 0.90256 1.26085 0.94384 0.97939 1.02920 1.69670 1.03480 1.41641 1.41300 0.84961 0.77677 0.78369 0.77158 1.19751 1.19356 1.19550 1.21303 0.75785 0.85959 0.86552 1.90684 1.47844 1.20423 1.88063 1.22914 1.02938 0.99468 0.89997 1.22926 1.01468 0.97147 0.94737 1.22475 0.98343 0.96459 0.94828 1.21733 0.96523 1.02076 0.99884 1.22997 0.96189 1.00015 0.96018 0.92457 0.93356 0.89188 0.89163 0.87959 0.88357 0.92323 0.96490 0.89329 0.83980 0.92275 0.87259 0.76942 0.91207 0.84264 0.90322 0.91742 0.86588 0.92202 0.94089 0.91301 0.91554 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.17 71.98 0.73 -0.76 16 2 C 0.10 1.03 5.82 86.38 0.50 1.53 16 3 N -0.61 -11.56 2.47 -821.83 -2.03 -13.59 16 4 C 0.12 2.91 5.67 86.38 0.49 3.40 16 5 C 0.06 1.53 6.01 86.30 0.52 2.05 16 6 N -0.68 -23.05 6.13 -517.94 -3.17 -26.23 16 7 C 0.07 2.43 6.17 85.56 0.53 2.95 16 8 C 0.44 21.69 7.82 87.66 0.69 22.37 16 9 O -0.62 -35.74 15.78 -3.07 -0.05 -35.79 16 10 N -0.57 -30.26 5.29 -306.98 -1.62 -31.88 16 11 C -0.34 -19.54 9.68 84.04 0.81 -18.72 16 12 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 13 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 14 N -0.92 -50.43 13.05 21.67 0.28 -50.15 16 15 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C 0.51 11.73 7.21 87.65 0.63 12.37 16 20 O -0.59 -19.57 15.48 -3.05 -0.05 -19.62 16 21 C -0.13 -1.86 2.79 -10.95 -0.03 -1.89 16 22 C -0.12 -1.95 6.97 31.12 0.22 -1.74 16 23 C -0.10 -1.06 4.35 -10.27 -0.04 -1.11 16 24 C -0.14 -1.65 9.70 71.98 0.70 -0.95 16 25 C -0.11 -1.27 6.48 31.18 0.20 -1.07 16 26 H 0.06 0.51 7.24 -2.39 -0.02 0.49 16 27 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.88 8.07 -2.38 -0.02 0.86 16 30 H 0.10 0.66 5.79 -2.39 -0.01 0.65 16 31 H 0.10 2.12 8.07 -2.38 -0.02 2.10 16 32 H 0.06 1.70 7.42 -2.39 -0.02 1.69 16 33 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.34 12.70 8.43 -89.69 -0.76 11.95 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 39 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.14 1.18 6.88 -2.39 -0.02 1.16 16 41 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.06 1.43 7.39 -2.39 -0.02 1.41 16 43 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.04 0.60 7.98 -2.39 -0.02 0.58 16 46 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 47 H 0.07 1.04 7.94 -2.39 -0.02 1.02 16 48 H 0.10 0.59 7.69 -2.39 -0.02 0.57 16 Total: -1.00 -75.24 391.08 1.27 -73.98 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.53 Total: 39.51 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.41 Total: 18.17 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -6.55 Total: -121.84 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -0.10 Total: -55.41 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -75.24 1.27 -73.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754040726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.425 kcal (2) G-P(sol) polarization free energy of solvation -75.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds