Wall clock time and date at job start Tue Mar 31 2020 10:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47705 * 2 1 4 4 H 1.09002 * 109.47103 * 54.99637 * 3 2 1 5 5 C 1.52997 * 109.47482 * 174.99884 * 3 2 1 6 6 N 1.46497 * 109.47081 * 295.00160 * 3 2 1 7 7 C 1.34777 * 120.00376 * 155.00022 * 6 3 2 8 8 O 1.21279 * 119.99824 * 359.97438 * 7 6 3 9 9 C 1.50699 * 120.00179 * 179.97438 * 7 6 3 10 10 N 1.46897 * 109.47296 * 179.97438 * 9 7 6 11 11 C 1.46959 * 110.99985 * 293.79788 * 10 9 7 12 12 C 1.53054 * 109.36577 * 176.81162 * 11 10 9 13 13 N 1.46949 * 109.36382 * 58.40300 * 12 11 10 14 14 C 1.46897 * 111.00022 * 176.81298 * 13 12 11 15 15 C 1.52998 * 109.47329 * 293.79818 * 14 13 12 16 16 C 1.52999 * 109.47623 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47229 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00250 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00126 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00354 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99574 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47117 * 90.00225 * 21 19 17 23 23 H 1.48507 * 109.46914 * 209.99821 * 21 19 17 24 24 H 1.48498 * 109.47522 * 329.99800 * 21 19 17 25 25 C 1.46958 * 110.88252 * 300.67927 * 13 12 11 26 26 C 1.46958 * 111.00131 * 170.00193 * 10 9 7 27 27 H 1.09000 * 109.46929 * 59.99736 * 1 2 3 28 28 H 1.09000 * 109.47812 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46974 * 300.00556 * 1 2 3 30 30 H 1.09001 * 109.46974 * 239.99443 * 2 1 3 31 31 H 1.09002 * 109.46661 * 119.99810 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 34 34 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 35 35 H 0.97006 * 119.99921 * 334.99446 * 6 3 2 36 36 H 1.08995 * 109.47183 * 300.00111 * 9 7 6 37 37 H 1.09009 * 109.47183 * 59.99391 * 9 7 6 38 38 H 1.09005 * 109.48860 * 296.78097 * 11 10 9 39 39 H 1.09003 * 109.49019 * 56.84210 * 11 10 9 40 40 H 1.09003 * 109.48365 * 298.43546 * 12 11 10 41 41 H 1.09001 * 109.48413 * 178.37216 * 12 11 10 42 42 H 1.09001 * 109.47320 * 53.79917 * 14 13 12 43 43 H 1.09004 * 109.47397 * 173.79761 * 14 13 12 44 44 H 1.09001 * 109.47000 * 300.00295 * 15 14 13 45 45 H 1.09004 * 109.46928 * 59.99655 * 15 14 13 46 46 H 1.09006 * 109.46780 * 299.99974 * 16 15 14 47 47 H 1.08996 * 109.47064 * 59.99640 * 16 15 14 48 48 H 0.96992 * 120.00163 * 180.02562 * 20 19 17 49 49 H 1.09004 * 109.49205 * 299.35438 * 25 13 12 50 50 H 1.09003 * 109.49407 * 179.29118 * 25 13 12 51 51 H 1.09002 * 109.48637 * 303.15049 * 26 10 9 52 52 H 1.08999 * 109.49064 * 63.21636 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4441 0.1257 6 7 1.6526 2.0974 -1.2518 7 6 1.5259 3.4383 -1.2996 8 8 1.7322 4.1027 -0.3062 9 6 1.1278 4.1121 -2.5875 10 7 1.0587 5.5646 -2.3792 11 6 -0.0297 5.9130 -1.4552 12 6 -0.0177 7.4226 -1.2031 13 7 -0.1690 8.1313 -2.4814 14 6 -0.2381 9.5838 -2.2732 15 6 -1.5211 9.9299 -1.5149 16 6 -1.5928 11.4426 -1.2974 17 6 -2.8562 11.7833 -0.5500 18 1 -3.5395 10.9993 -0.2588 19 6 -3.1393 13.0959 -0.2369 20 7 -4.2417 13.3933 0.4158 21 14 -1.9564 14.4518 -0.7387 22 1 -2.3227 14.9543 -2.0871 23 1 -2.0338 15.5642 0.2420 24 1 -0.5722 13.9147 -0.7698 25 6 0.9193 7.7830 -3.4055 26 6 0.9073 6.2734 -3.6576 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.9995 0.9050 -0.7160 33 1 3.8532 0.9568 1.0572 34 1 3.9284 2.4718 0.1253 35 1 1.4872 1.5660 -2.0463 36 1 1.8666 3.8898 -3.3573 37 1 0.1517 3.7439 -2.9036 38 1 -0.9852 5.6251 -1.8937 39 1 0.1114 5.3856 -0.5117 40 1 0.9272 7.7063 -0.7395 41 1 -0.8420 7.6871 -0.5407 42 1 0.6256 9.9092 -1.6933 43 1 -0.2390 10.0897 -3.2387 44 1 -2.3848 9.6044 -2.0947 45 1 -1.5202 9.4240 -0.5494 46 1 -0.7290 11.7676 -0.7173 47 1 -1.5934 11.9488 -2.2627 48 1 -4.4410 14.3167 0.6357 49 1 1.8749 8.0708 -2.9671 50 1 0.7782 8.3104 -4.3490 51 1 1.7317 6.0088 -4.3199 52 1 -0.0375 5.9896 -4.1212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160962703.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:41 Heat of formation + Delta-G solvation = -66.287603 kcal Electronic energy + Delta-G solvation = -26195.616469 eV Core-core repulsion = 22614.406758 eV Total energy + Delta-G solvation = -3581.209710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16471 -39.96899 -37.65220 -36.83067 -35.36896 -33.62713 -33.25558 -31.88041 -30.99477 -30.07105 -28.09530 -25.78501 -24.70326 -24.55434 -23.51766 -21.93636 -21.62096 -21.42843 -20.75484 -18.90354 -18.08395 -17.53308 -16.99549 -16.65497 -16.30703 -16.18075 -15.70374 -15.64878 -15.58625 -15.15085 -14.94882 -14.77468 -14.61808 -14.57375 -14.35182 -14.14354 -13.69931 -13.40563 -13.26135 -13.04855 -12.83817 -12.73989 -12.65701 -12.44478 -12.27871 -12.23031 -12.07043 -12.00897 -11.89721 -11.72866 -11.62402 -11.48236 -11.36743 -11.16561 -10.76284 -10.69507 -10.03710 -9.39729 -9.22508 -8.29685 -6.33986 1.35104 1.37776 1.50043 1.70899 2.12118 2.36248 2.91280 2.99438 3.05167 3.73212 3.86638 3.93482 3.99862 4.08584 4.15766 4.19228 4.22590 4.27847 4.35479 4.43008 4.49683 4.51691 4.57437 4.58353 4.64977 4.67012 4.75036 4.84229 4.84717 4.87960 4.92150 4.94651 4.96519 4.99997 5.08344 5.12560 5.14958 5.18790 5.28361 5.40963 5.50203 5.59014 5.63087 5.65689 5.88028 5.95436 6.13721 6.20083 6.29985 6.66335 6.73852 7.30256 7.37818 8.87368 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.023208 B = 0.002156 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.170035 B =12983.785845 C =13540.106547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.139 3.861 4 H 0.057 0.943 5 C -0.158 4.158 6 N -0.713 5.713 7 C 0.509 3.491 8 O -0.569 6.569 9 C 0.039 3.961 10 N -0.540 5.540 11 C 0.068 3.932 12 C 0.060 3.940 13 N -0.545 5.545 14 C 0.066 3.934 15 C -0.087 4.087 16 C -0.009 4.009 17 C -0.533 4.533 18 H 0.028 0.972 19 C 0.000 4.000 20 N -0.953 5.953 21 Si 0.956 3.044 22 H -0.263 1.263 23 H -0.284 1.284 24 H -0.248 1.248 25 C 0.053 3.947 26 C 0.065 3.935 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.415 0.585 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.025 0.975 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.040 0.960 46 H 0.016 0.984 47 H 0.023 0.977 48 H 0.266 0.734 49 H 0.031 0.969 50 H 0.096 0.904 51 H 0.108 0.892 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.230 -30.858 -10.462 36.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.034 3.966 4 H 0.075 0.925 5 C -0.217 4.217 6 N -0.367 5.367 7 C 0.296 3.704 8 O -0.447 6.447 9 C -0.092 4.092 10 N -0.266 5.266 11 C -0.060 4.060 12 C -0.068 4.068 13 N -0.270 5.270 14 C -0.062 4.062 15 C -0.125 4.125 16 C -0.047 4.047 17 C -0.571 4.571 18 H 0.046 0.954 19 C -0.197 4.197 20 N -0.593 5.593 21 Si 0.778 3.222 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.171 1.171 25 C -0.075 4.075 26 C -0.063 4.063 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.252 0.748 36 H 0.152 0.848 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.050 0.950 50 H 0.114 0.886 51 H 0.126 0.874 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.288 -30.269 -9.685 36.179 hybrid contribution -0.275 0.830 0.277 0.918 sum 17.013 -29.439 -9.408 35.279 Atomic orbital electron populations 1.21785 0.95678 1.02179 1.01544 1.21781 0.96070 0.93651 1.04390 1.20985 0.94963 0.93999 0.86604 0.92466 1.22125 0.95142 1.01221 1.03178 1.45967 1.70280 1.06171 1.14283 1.20991 0.76263 0.82638 0.90536 1.90695 1.50871 1.64911 1.38269 1.22047 1.03865 0.87820 0.95421 1.61793 1.45824 1.06255 1.12726 1.22092 0.91739 0.94644 0.97517 1.22071 0.99511 0.93932 0.91312 1.62211 1.45445 1.07060 1.12316 1.22065 0.96441 0.87333 1.00348 1.21281 0.96862 0.95798 0.98597 1.19490 0.94915 0.94377 0.95944 1.21494 1.06367 0.93150 1.36084 0.95392 1.26095 0.97157 1.01812 0.94596 1.70078 1.27194 1.19834 1.42226 0.85578 0.80235 0.77788 0.78551 1.18753 1.20931 1.17141 1.22268 0.91780 0.96474 0.96958 1.22221 1.01948 0.92257 0.89826 0.92631 0.91418 0.94147 0.89388 0.89644 0.90863 0.90764 0.94841 0.74841 0.84846 0.89921 0.94471 0.90319 0.95713 0.91441 0.95492 0.89772 0.93125 0.94122 0.96549 0.95853 0.92486 0.95023 0.88626 0.87437 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.80 71.98 0.71 -0.63 16 2 C -0.12 -0.83 5.47 30.59 0.17 -0.66 16 3 C 0.14 1.77 2.57 44.99 0.12 1.88 16 4 H 0.06 1.11 7.58 -2.39 -0.02 1.09 16 5 C -0.16 -1.96 9.48 71.98 0.68 -1.28 16 6 N -0.71 -8.26 4.53 -442.56 -2.00 -10.26 16 7 C 0.51 9.67 7.49 87.66 0.66 10.33 16 8 O -0.57 -16.93 14.00 -3.03 -0.04 -16.98 16 9 C 0.04 0.56 5.45 85.56 0.47 1.03 16 10 N -0.54 -11.89 4.45 -900.25 -4.00 -15.89 16 11 C 0.07 1.86 5.26 86.31 0.45 2.31 16 12 C 0.06 1.91 5.41 86.31 0.47 2.38 16 13 N -0.55 -16.52 4.71 -895.71 -4.22 -20.74 16 14 C 0.07 2.23 4.96 86.30 0.43 2.65 16 15 C -0.09 -3.70 5.09 30.59 0.16 -3.54 16 16 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 17 C -0.53 -32.35 9.66 25.60 0.25 -32.10 16 18 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 19 C 0.00 -0.02 5.47 84.66 0.46 0.45 16 20 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 21 Si 0.96 45.77 27.47 68.60 1.88 47.65 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 25 C 0.05 1.24 5.61 86.31 0.48 1.72 16 26 C 0.06 1.19 5.61 86.31 0.48 1.67 16 27 H 0.05 0.48 7.75 -2.39 -0.02 0.46 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.41 1.90 8.60 -92.70 -0.80 1.10 16 36 H 0.13 1.07 8.03 -2.39 -0.02 1.05 16 37 H 0.08 0.90 8.12 -2.38 -0.02 0.88 16 38 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.08 2.40 5.85 -2.39 -0.01 2.39 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 2.35 6.34 -2.39 -0.02 2.34 16 42 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 43 H 0.08 2.60 8.03 -2.38 -0.02 2.58 16 44 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.04 1.79 6.49 -2.38 -0.02 1.77 16 46 H 0.02 0.79 7.20 -2.38 -0.02 0.77 16 47 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 48 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 49 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.10 1.91 8.07 -2.39 -0.02 1.89 16 51 H 0.11 1.34 8.07 -2.39 -0.02 1.32 16 52 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -78.15 401.06 -1.98 -80.13 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.01 Total: 11.74 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 6.10 Total: -14.14 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -9.93 Total: -108.40 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.04 Total: -16.98 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.65 kcal Total: -78.15 -1.98 -80.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160962703.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.839 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds