Wall clock time and date at job start Tue Mar 31 2020 09:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53337 * 1 3 3 C 1.54505 * 107.20069 * 2 1 4 4 C 1.52663 * 109.51925 * 116.35782 * 2 1 3 5 5 C 1.52846 * 110.39238 * 75.31919 * 4 2 1 6 6 N 1.46830 * 109.23096 * 179.07703 * 5 4 2 7 7 C 1.34774 * 119.99810 * 155.00081 * 6 5 4 8 8 O 1.21587 * 120.00059 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00349 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00491 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47074 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46637 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47128 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99896 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00322 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00131 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46946 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47289 * 119.99846 * 17 15 13 20 20 H 1.48498 * 109.46967 * 240.00083 * 17 15 13 21 21 C 1.52848 * 108.52216 * 60.07891 * 5 4 2 22 22 C 1.52666 * 110.35739 * 299.82404 * 21 5 4 23 23 C 1.53334 * 109.52537 * 284.88623 * 22 21 5 24 24 C 1.54491 * 107.52807 * 168.70786 * 22 21 5 25 25 N 1.44788 * 111.17084 * 241.94770 * 2 1 3 26 26 H 1.08994 * 109.47204 * 303.64421 * 1 2 3 27 27 H 1.09003 * 109.46675 * 63.63550 * 1 2 3 28 28 H 1.08999 * 109.47382 * 183.63613 * 1 2 3 29 29 H 1.09000 * 109.47356 * 177.67030 * 3 2 1 30 30 H 1.09009 * 109.47240 * 297.67394 * 3 2 1 31 31 H 1.09006 * 109.47363 * 57.67065 * 3 2 1 32 32 H 1.09252 * 109.42947 * 314.90864 * 4 2 1 33 33 H 1.09238 * 109.44850 * 195.75795 * 4 2 1 34 34 H 1.08690 * 110.43705 * 298.88002 * 5 4 2 35 35 H 0.96991 * 120.00082 * 335.00214 * 6 5 4 36 36 H 0.96999 * 119.99823 * 359.97438 * 9 7 6 37 37 H 1.08994 * 109.46386 * 299.99929 * 10 9 7 38 38 H 1.08999 * 109.46731 * 59.99777 * 10 9 7 39 39 H 1.09001 * 109.47185 * 299.99853 * 11 10 9 40 40 H 1.09006 * 109.47108 * 60.00063 * 11 10 9 41 41 H 1.09001 * 109.47375 * 299.99934 * 12 11 10 42 42 H 1.08999 * 109.47530 * 60.00195 * 12 11 10 43 43 H 0.97001 * 120.00332 * 180.02562 * 16 15 13 44 44 H 1.09237 * 109.37769 * 60.28158 * 21 5 4 45 45 H 1.09241 * 109.37469 * 179.36897 * 21 5 4 46 46 H 1.09005 * 109.47434 * 185.53479 * 23 22 21 47 47 H 1.09005 * 109.47317 * 305.53908 * 23 22 21 48 48 H 1.09003 * 109.47364 * 65.53754 * 23 22 21 49 49 H 1.09007 * 109.46837 * 297.69705 * 24 22 21 50 50 H 1.09000 * 109.47471 * 57.69030 * 24 22 21 51 51 H 1.08998 * 109.47374 * 177.69688 * 24 22 21 52 52 H 1.00896 * 112.58175 * 53.24534 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5334 0.0000 0.0000 3 6 1.9903 1.4759 0.0000 4 6 2.0435 -0.6388 1.2893 5 6 1.8792 -2.1574 1.2325 6 7 2.3971 -2.7466 2.4737 7 6 1.9376 -3.9414 2.8953 8 8 1.0947 -4.5316 2.2476 9 7 2.4126 -4.4821 4.0348 10 6 1.9136 -5.7812 4.4928 11 6 2.6110 -6.1634 5.7999 12 6 2.0894 -7.5197 6.2785 13 6 2.7768 -7.8966 7.5656 14 1 3.5118 -7.2346 7.9991 15 6 2.4665 -9.0858 8.1903 16 7 1.5711 -9.8917 7.6627 17 14 3.3181 -9.5526 9.7861 18 1 4.2764 -8.4840 10.1667 19 1 2.3045 -9.7142 10.8592 20 1 4.0508 -10.8308 9.6007 21 6 2.6857 -2.6890 0.0480 22 6 2.1811 -2.0761 -1.2560 23 6 0.8511 -2.7303 -1.6488 24 6 3.2047 -2.4230 -2.3599 25 7 2.0563 -0.6349 -1.1915 26 1 -0.3633 0.5693 0.8555 27 1 -0.3633 0.4564 -0.9208 28 1 -0.3634 -1.0256 0.0652 29 1 3.0786 1.5194 0.0418 30 1 1.6418 1.9642 -0.9102 31 1 1.5727 1.9856 0.8684 32 1 1.4793 -0.2450 2.1380 33 1 3.0993 -0.3933 1.4239 34 1 0.8303 -2.4220 1.1270 35 1 3.0698 -2.2760 2.9901 36 1 3.0853 -4.0115 4.5513 37 1 0.8382 -5.7191 4.6590 38 1 2.1212 -6.5375 3.7359 39 1 3.6864 -6.2255 5.6332 40 1 2.4037 -5.4070 6.5570 41 1 1.0140 -7.4572 6.4452 42 1 2.2963 -8.2763 5.5216 43 1 1.3525 -10.7282 8.1024 44 1 3.7397 -2.4365 0.1846 45 1 2.5870 -3.7760 0.0010 46 1 0.5410 -2.3639 -2.6275 47 1 0.9763 -3.8124 -1.6890 48 1 0.0905 -2.4798 -0.9094 49 1 4.1678 -1.9742 -2.1164 50 1 3.3148 -3.5054 -2.4262 51 1 2.8540 -2.0342 -3.3159 52 1 1.6764 -0.2408 -2.0391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171731789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:48 Heat of formation + Delta-G solvation = -61.514310 kcal Electronic energy + Delta-G solvation = -26599.368014 eV Core-core repulsion = 23018.365289 eV Total energy + Delta-G solvation = -3581.002725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.59676 -39.29403 -35.68088 -35.35668 -34.73409 -33.29402 -31.51290 -30.23835 -28.91935 -27.91660 -26.92348 -26.55475 -26.53562 -23.40589 -22.08921 -20.94179 -20.70431 -20.29398 -18.76055 -17.78909 -16.68913 -16.28950 -15.93506 -15.69304 -15.25650 -14.76088 -14.53666 -14.36756 -14.33647 -13.84281 -13.76368 -13.72515 -13.55837 -13.22119 -12.87067 -12.48374 -12.40020 -12.28071 -12.00256 -11.94462 -11.79101 -11.78679 -11.70575 -11.50374 -11.19453 -10.98143 -10.91933 -10.80938 -10.70818 -10.64278 -10.55521 -10.02610 -9.84673 -9.42510 -9.12565 -9.09981 -8.56899 -8.41000 -8.36764 -6.01124 -4.04080 2.81955 3.30292 3.37749 3.40800 3.41301 3.63537 4.27268 4.40171 4.45614 4.52783 4.56950 4.68086 4.71722 4.95213 5.04815 5.12994 5.19612 5.28970 5.34697 5.38051 5.42455 5.44721 5.51199 5.54970 5.63030 5.64165 5.70182 5.75995 5.78035 5.83117 5.84041 5.88768 5.94952 5.97583 6.08553 6.17307 6.20761 6.52068 6.56286 6.64411 6.83948 7.04360 7.11922 7.25575 7.28509 7.65185 7.77949 7.98044 8.19894 8.39032 8.80111 9.02893 9.60053 11.10223 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.002087 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.142012 B =13412.175630 C =13757.871264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.153 3.847 3 C -0.141 4.141 4 C -0.117 4.117 5 C 0.166 3.834 6 N -0.749 5.749 7 C 0.700 3.300 8 O -0.593 6.593 9 N -0.742 5.742 10 C 0.135 3.865 11 C -0.120 4.120 12 C 0.023 3.977 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.120 4.120 22 C 0.150 3.850 23 C -0.181 4.181 24 C -0.141 4.141 25 N -0.720 5.720 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.393 0.607 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.052 0.948 52 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.995 23.892 -19.264 30.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.061 3.939 3 C -0.199 4.199 4 C -0.156 4.156 5 C 0.061 3.939 6 N -0.405 5.405 7 C 0.400 3.600 8 O -0.471 6.471 9 N -0.397 5.397 10 C 0.012 3.988 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.159 4.159 22 C 0.059 3.941 23 C -0.240 4.240 24 C -0.199 4.199 25 N -0.356 5.356 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.226 0.774 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.606 23.120 -19.535 30.311 hybrid contribution 0.200 -0.097 1.180 1.201 sum 1.806 23.023 -18.355 29.499 Atomic orbital electron populations 1.22811 0.97157 1.02336 1.02020 1.20175 0.91606 0.93539 0.88530 1.22261 1.01802 0.94421 1.01432 1.21903 1.02449 0.94111 0.97127 1.20674 0.98945 0.91555 0.82734 1.45322 1.46689 1.21299 1.27152 1.16039 0.81593 0.80940 0.81450 1.90910 1.35771 1.62620 1.57816 1.45399 1.45828 1.23661 1.24772 1.21493 0.98662 0.81724 0.96897 1.21884 0.99329 1.01063 0.93524 1.19034 0.96657 0.89662 0.96079 1.21243 1.22952 1.04216 1.07513 0.92611 1.25037 0.95243 0.96533 0.97729 1.69975 1.32478 1.11342 1.39478 0.86527 0.79449 0.78393 0.83563 1.19775 1.21009 1.21009 1.22039 0.99989 1.01025 0.92850 1.20231 0.94061 0.84732 0.95044 1.22763 0.98440 1.01832 1.00990 1.22247 0.99047 1.01022 0.97572 1.54634 1.68598 1.07842 1.04527 0.92101 0.92661 0.92247 0.92058 0.92770 0.92397 0.90779 0.90808 0.89342 0.77380 0.77384 0.92038 0.92029 0.92787 0.92804 0.96255 0.96249 0.92989 0.91366 0.90660 0.92940 0.91875 0.92397 0.92143 0.92313 0.92932 0.81876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 8.23 37.33 0.31 -1.00 16 2 C 0.15 1.05 0.93 -131.94 -0.12 0.93 16 3 C -0.14 -0.81 8.52 37.95 0.32 -0.49 16 4 C -0.12 -0.90 4.13 -26.98 -0.11 -1.01 16 5 C 0.17 1.71 2.33 -67.91 -0.16 1.55 16 6 N -0.75 -8.27 5.07 -58.73 -0.30 -8.57 16 7 C 0.70 10.79 8.54 -86.92 -0.74 10.05 16 8 O -0.59 -11.65 15.99 5.29 0.08 -11.56 16 9 N -0.74 -10.93 5.56 -65.23 -0.36 -11.29 16 10 C 0.14 2.45 5.67 -4.04 -0.02 2.43 16 11 C -0.12 -2.37 5.27 -26.74 -0.14 -2.51 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 17 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.12 -1.20 4.24 -26.98 -0.11 -1.32 16 22 C 0.15 1.24 0.92 -131.94 -0.12 1.12 16 23 C -0.18 -1.61 8.29 37.33 0.31 -1.30 16 24 C -0.14 -1.06 8.52 37.94 0.32 -0.74 16 25 N -0.72 -5.07 4.80 -87.45 -0.42 -5.49 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.51 5.03 -51.93 -0.26 0.25 16 29 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.05 0.29 8.14 -51.92 -0.42 -0.14 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.55 8.07 -51.79 -0.42 0.13 16 33 H 0.07 0.53 8.05 -51.79 -0.42 0.11 16 34 H 0.09 1.14 5.73 -52.10 -0.30 0.84 16 35 H 0.39 3.23 8.61 -40.82 -0.35 2.88 16 36 H 0.39 4.61 8.49 -40.82 -0.35 4.26 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 0.67 8.07 -51.80 -0.42 0.25 16 45 H 0.07 0.94 8.02 -51.79 -0.42 0.52 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 48 H 0.06 0.57 5.09 -51.93 -0.26 0.31 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 52 H 0.36 2.19 8.81 -39.29 -0.35 1.84 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -32.42 400.89 -9.90 -42.32 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -9.84 Total: 3.48 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -0.82 Total: -5.25 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.34 Total: -51.57 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.42 -9.90 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171731789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.197 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds