Wall clock time and date at job start Tue Mar 31 2020 09:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53337 * 1 3 3 C 1.54505 * 107.20069 * 2 1 4 4 C 1.52663 * 109.51925 * 116.35782 * 2 1 3 5 5 C 1.52846 * 110.39238 * 75.31919 * 4 2 1 6 6 N 1.46830 * 109.23096 * 179.07703 * 5 4 2 7 7 C 1.34774 * 119.99810 * 155.00081 * 6 5 4 8 8 O 1.21587 * 120.00059 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00349 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00491 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47074 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46637 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47128 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99896 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00322 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00131 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46946 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47289 * 119.99846 * 17 15 13 20 20 H 1.48498 * 109.46967 * 240.00083 * 17 15 13 21 21 C 1.52848 * 108.52216 * 60.07891 * 5 4 2 22 22 C 1.52666 * 110.35739 * 299.82404 * 21 5 4 23 23 C 1.53334 * 109.52537 * 284.88623 * 22 21 5 24 24 C 1.54491 * 107.52807 * 168.70786 * 22 21 5 25 25 N 1.44788 * 111.17084 * 241.94770 * 2 1 3 26 26 H 1.08994 * 109.47204 * 303.64421 * 1 2 3 27 27 H 1.09003 * 109.46675 * 63.63550 * 1 2 3 28 28 H 1.08999 * 109.47382 * 183.63613 * 1 2 3 29 29 H 1.09000 * 109.47356 * 177.67030 * 3 2 1 30 30 H 1.09009 * 109.47240 * 297.67394 * 3 2 1 31 31 H 1.09006 * 109.47363 * 57.67065 * 3 2 1 32 32 H 1.09252 * 109.42947 * 314.90864 * 4 2 1 33 33 H 1.09238 * 109.44850 * 195.75795 * 4 2 1 34 34 H 1.08690 * 110.43705 * 298.88002 * 5 4 2 35 35 H 0.96991 * 120.00082 * 335.00214 * 6 5 4 36 36 H 0.96999 * 119.99823 * 359.97438 * 9 7 6 37 37 H 1.08994 * 109.46386 * 299.99929 * 10 9 7 38 38 H 1.08999 * 109.46731 * 59.99777 * 10 9 7 39 39 H 1.09001 * 109.47185 * 299.99853 * 11 10 9 40 40 H 1.09006 * 109.47108 * 60.00063 * 11 10 9 41 41 H 1.09001 * 109.47375 * 299.99934 * 12 11 10 42 42 H 1.08999 * 109.47530 * 60.00195 * 12 11 10 43 43 H 0.97001 * 120.00332 * 180.02562 * 16 15 13 44 44 H 1.09237 * 109.37769 * 60.28158 * 21 5 4 45 45 H 1.09241 * 109.37469 * 179.36897 * 21 5 4 46 46 H 1.09005 * 109.47434 * 185.53479 * 23 22 21 47 47 H 1.09005 * 109.47317 * 305.53908 * 23 22 21 48 48 H 1.09003 * 109.47364 * 65.53754 * 23 22 21 49 49 H 1.09007 * 109.46837 * 297.69705 * 24 22 21 50 50 H 1.09000 * 109.47471 * 57.69030 * 24 22 21 51 51 H 1.08998 * 109.47374 * 177.69688 * 24 22 21 52 52 H 1.00896 * 112.58175 * 53.24534 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5334 0.0000 0.0000 3 6 1.9903 1.4759 0.0000 4 6 2.0435 -0.6388 1.2893 5 6 1.8792 -2.1574 1.2325 6 7 2.3971 -2.7466 2.4737 7 6 1.9376 -3.9414 2.8953 8 8 1.0947 -4.5316 2.2476 9 7 2.4126 -4.4821 4.0348 10 6 1.9136 -5.7812 4.4928 11 6 2.6110 -6.1634 5.7999 12 6 2.0894 -7.5197 6.2785 13 6 2.7768 -7.8966 7.5656 14 1 3.5118 -7.2346 7.9991 15 6 2.4665 -9.0858 8.1903 16 7 1.5711 -9.8917 7.6627 17 14 3.3181 -9.5526 9.7861 18 1 4.2764 -8.4840 10.1667 19 1 2.3045 -9.7142 10.8592 20 1 4.0508 -10.8308 9.6007 21 6 2.6857 -2.6890 0.0480 22 6 2.1811 -2.0761 -1.2560 23 6 0.8511 -2.7303 -1.6488 24 6 3.2047 -2.4230 -2.3599 25 7 2.0563 -0.6349 -1.1915 26 1 -0.3633 0.5693 0.8555 27 1 -0.3633 0.4564 -0.9208 28 1 -0.3634 -1.0256 0.0652 29 1 3.0786 1.5194 0.0418 30 1 1.6418 1.9642 -0.9102 31 1 1.5727 1.9856 0.8684 32 1 1.4793 -0.2450 2.1380 33 1 3.0993 -0.3933 1.4239 34 1 0.8303 -2.4220 1.1270 35 1 3.0698 -2.2760 2.9901 36 1 3.0853 -4.0115 4.5513 37 1 0.8382 -5.7191 4.6590 38 1 2.1212 -6.5375 3.7359 39 1 3.6864 -6.2255 5.6332 40 1 2.4037 -5.4070 6.5570 41 1 1.0140 -7.4572 6.4452 42 1 2.2963 -8.2763 5.5216 43 1 1.3525 -10.7282 8.1024 44 1 3.7397 -2.4365 0.1846 45 1 2.5870 -3.7760 0.0010 46 1 0.5410 -2.3639 -2.6275 47 1 0.9763 -3.8124 -1.6890 48 1 0.0905 -2.4798 -0.9094 49 1 4.1678 -1.9742 -2.1164 50 1 3.3148 -3.5054 -2.4262 51 1 2.8540 -2.0342 -3.3159 52 1 1.6764 -0.2408 -2.0391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171731789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:47 Heat of formation + Delta-G solvation = -83.920900 kcal Electronic energy + Delta-G solvation = -26600.339637 eV Core-core repulsion = 23018.365289 eV Total energy + Delta-G solvation = -3581.974347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.51316 -40.32788 -37.11030 -36.00996 -35.88952 -35.18506 -33.15993 -31.38386 -29.56724 -28.51814 -28.35217 -27.51817 -27.25596 -25.11482 -23.17594 -22.30628 -21.79727 -21.37994 -19.72983 -18.78062 -18.52697 -17.45050 -16.93576 -16.76920 -16.48205 -16.22067 -15.74537 -15.53297 -15.37309 -15.00678 -14.78687 -14.53711 -14.26281 -14.20440 -13.85444 -13.72874 -13.59359 -13.50788 -13.08677 -12.99883 -12.78747 -12.60071 -12.54775 -12.49649 -12.39519 -12.33669 -12.23214 -11.92363 -11.72364 -11.66595 -11.62386 -11.56102 -11.35822 -11.24451 -11.06671 -10.56340 -10.33642 -9.75761 -9.00974 -8.19592 -6.31090 1.41687 1.41950 1.55172 1.68577 2.14879 2.41882 3.03755 3.14191 3.27434 3.68746 3.79680 3.91164 3.97711 4.05701 4.16884 4.22975 4.28856 4.32317 4.44559 4.46440 4.55919 4.67443 4.73702 4.78961 4.89492 4.90692 4.94226 4.95599 4.96651 4.99360 5.04324 5.07571 5.09827 5.14205 5.16831 5.25005 5.28537 5.36170 5.44850 5.47050 5.52193 5.54241 5.56878 5.70887 5.84283 6.02647 6.22599 6.62451 6.74896 6.86454 7.12903 7.38507 7.59397 8.92840 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.002087 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.142012 B =13412.175630 C =13757.871264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.151 3.849 3 C -0.134 4.134 4 C -0.111 4.111 5 C 0.166 3.834 6 N -0.729 5.729 7 C 0.697 3.303 8 O -0.639 6.639 9 N -0.731 5.731 10 C 0.151 3.849 11 C -0.099 4.099 12 C 0.023 3.977 13 C -0.539 4.539 14 H 0.067 0.933 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.115 4.115 22 C 0.155 3.845 23 C -0.178 4.178 24 C -0.136 4.136 25 N -0.714 5.714 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.411 0.589 36 H 0.412 0.588 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.068 0.932 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.075 0.925 45 H 0.044 0.956 46 H 0.067 0.933 47 H 0.045 0.955 48 H 0.044 0.956 49 H 0.062 0.938 50 H 0.050 0.950 51 H 0.065 0.935 52 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 26.580 -18.885 32.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.060 3.940 3 C -0.192 4.192 4 C -0.149 4.149 5 C 0.061 3.939 6 N -0.385 5.385 7 C 0.397 3.603 8 O -0.521 6.521 9 N -0.386 5.386 10 C 0.026 3.974 11 C -0.137 4.137 12 C -0.015 4.015 13 C -0.577 4.577 14 H 0.085 0.915 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.181 1.181 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.154 4.154 22 C 0.063 3.937 23 C -0.237 4.237 24 C -0.194 4.194 25 N -0.351 5.351 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.248 0.752 36 H 0.248 0.752 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.069 0.931 51 H 0.084 0.916 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.510 25.884 -19.154 32.391 hybrid contribution -0.428 -0.926 1.009 1.435 sum 3.082 24.958 -18.145 31.011 Atomic orbital electron populations 1.22792 0.97417 1.01140 1.02728 1.20240 0.91376 0.94395 0.88018 1.22191 1.01765 0.93066 1.02190 1.21894 1.03471 0.91559 0.97998 1.20730 0.97347 0.93487 0.82319 1.45159 1.46299 1.19703 1.27326 1.16203 0.81206 0.81777 0.81148 1.90886 1.37926 1.64144 1.59151 1.45034 1.46121 1.22557 1.24912 1.21051 0.97604 0.83010 0.95754 1.21580 0.99842 0.97999 0.94310 1.18951 0.95133 0.92298 0.95108 1.21705 1.23126 1.04588 1.08248 0.91467 1.26048 0.95937 0.96576 1.01721 1.70121 1.34159 1.11932 1.41404 0.85346 0.78423 0.78337 0.78605 1.18132 1.20582 1.20600 1.21966 1.00404 0.99212 0.93827 1.20135 0.93739 0.85512 0.94289 1.22747 0.98689 1.00836 1.01466 1.22195 0.98813 1.00626 0.97783 1.54661 1.68591 1.06756 1.05085 0.91673 0.91729 0.94338 0.92059 0.92047 0.91681 0.90134 0.89472 0.92185 0.75245 0.75199 0.93696 0.93728 0.91333 0.91316 0.98993 0.99007 0.92823 0.90599 0.93751 0.91359 0.93633 0.93738 0.91915 0.93081 0.91646 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.23 72.10 0.59 -1.77 16 2 C 0.15 1.79 0.93 4.44 0.00 1.79 16 3 C -0.13 -1.16 8.52 72.49 0.62 -0.54 16 4 C -0.11 -1.49 4.13 30.43 0.13 -1.36 16 5 C 0.17 3.36 2.33 44.83 0.10 3.47 16 6 N -0.73 -15.46 5.07 -457.98 -2.32 -17.78 16 7 C 0.70 21.56 8.54 179.06 1.53 23.09 16 8 O -0.64 -26.17 15.99 -3.99 -0.06 -26.23 16 9 N -0.73 -20.99 5.56 -478.54 -2.66 -23.65 16 10 C 0.15 5.54 5.67 86.38 0.49 6.03 16 11 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 12 C 0.02 1.20 4.97 29.85 0.15 1.35 16 13 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 15 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 16 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 17 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.11 -2.30 4.24 30.43 0.13 -2.17 16 22 C 0.15 2.46 0.92 4.43 0.00 2.47 16 23 C -0.18 -3.24 8.29 72.09 0.60 -2.65 16 24 C -0.14 -1.90 8.52 72.49 0.62 -1.28 16 25 N -0.71 -8.76 4.80 -430.58 -2.07 -10.82 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.04 0.67 5.03 -2.39 -0.01 0.66 16 29 H 0.06 0.56 8.12 -2.39 -0.02 0.54 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.08 1.01 8.07 -2.25 -0.02 0.99 16 33 H 0.09 0.98 8.05 -2.26 -0.02 0.96 16 34 H 0.06 1.61 5.73 -2.55 -0.01 1.60 16 35 H 0.41 5.84 8.61 -92.71 -0.80 5.04 16 36 H 0.41 8.77 8.49 -92.71 -0.79 7.98 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.07 2.49 8.14 -2.38 -0.02 2.48 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.08 1.39 8.07 -2.26 -0.02 1.37 16 45 H 0.04 1.16 8.02 -2.26 -0.02 1.15 16 46 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.04 0.97 8.06 -2.38 -0.02 0.95 16 48 H 0.04 0.93 5.09 -2.39 -0.01 0.92 16 49 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 50 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.37 3.63 8.81 -89.70 -0.79 2.84 16 Total: -1.00 -72.21 400.89 -0.46 -72.67 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -1.47 Total: 22.29 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 5.82 Total: -5.15 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -6.77 Total: -109.63 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.06 Total: -26.23 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.21 -0.46 -72.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171731789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.254 kcal (2) G-P(sol) polarization free energy of solvation -72.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds