Wall clock time and date at job start Tue Mar 31 2020 10:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47521 * 2 1 4 4 N 1.46899 * 109.47190 * 120.00749 * 2 1 3 5 5 C 1.46261 * 111.00391 * 70.74019 * 4 2 1 6 6 C 1.47546 * 114.37307 * 148.55939 * 5 4 2 7 7 C 1.54944 * 109.73728 * 62.22125 * 6 5 4 8 8 N 1.44675 * 109.51907 * 290.51805 * 7 6 5 9 9 C 1.34769 * 118.55014 * 269.08389 * 8 7 6 10 10 O 1.21593 * 120.00474 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99990 * 359.97438 * 9 8 7 12 12 C 1.46503 * 119.99994 * 180.27634 * 11 9 8 13 13 C 1.53002 * 109.46824 * 179.72420 * 12 11 9 14 14 C 1.52998 * 109.47504 * 300.00388 * 13 12 11 15 15 C 1.53001 * 109.46975 * 60.00190 * 13 12 11 16 16 C 1.50701 * 109.46900 * 180.02562 * 13 12 11 17 17 H 1.07994 * 119.99977 * 357.71148 * 16 13 12 18 18 C 1.37881 * 119.99926 * 177.71989 * 16 13 12 19 19 N 1.31518 * 119.99969 * 6.74500 * 18 16 13 20 20 Si 1.86797 * 119.99921 * 186.75203 * 18 16 13 21 21 H 1.48496 * 109.47074 * 94.99100 * 20 18 16 22 22 H 1.48503 * 109.46861 * 214.98516 * 20 18 16 23 23 H 1.48493 * 109.47024 * 334.98910 * 20 18 16 24 24 C 1.47783 * 122.90391 * 89.35627 * 8 7 6 25 25 C 1.44771 * 110.99647 * 307.24684 * 4 2 1 26 26 H 1.09009 * 109.46633 * 305.14292 * 1 2 3 27 27 H 1.08998 * 109.47388 * 65.13493 * 1 2 3 28 28 H 1.08993 * 109.47487 * 185.14316 * 1 2 3 29 29 H 1.09006 * 109.46639 * 240.00045 * 2 1 3 30 30 H 1.08998 * 109.47446 * 298.53107 * 3 2 1 31 31 H 1.09003 * 109.46905 * 58.52835 * 3 2 1 32 32 H 1.09000 * 109.47329 * 178.52761 * 3 2 1 33 33 H 1.09001 * 108.50245 * 27.29420 * 5 4 2 34 34 H 1.08997 * 108.38306 * 269.73807 * 5 4 2 35 35 H 1.09001 * 109.42721 * 302.13724 * 6 5 4 36 36 H 1.09007 * 109.38064 * 182.27766 * 6 5 4 37 37 H 1.08997 * 109.46329 * 170.50284 * 7 6 5 38 38 H 1.08996 * 109.45731 * 50.52761 * 7 6 5 39 39 H 0.96997 * 119.99695 * 0.02562 * 11 9 8 40 40 H 1.08996 * 109.47340 * 299.72567 * 12 11 9 41 41 H 1.08995 * 109.47033 * 59.73239 * 12 11 9 42 42 H 1.09002 * 109.47177 * 64.15351 * 14 13 12 43 43 H 1.08998 * 109.47615 * 184.15975 * 14 13 12 44 44 H 1.08998 * 109.46823 * 304.15487 * 14 13 12 45 45 H 1.09004 * 109.47437 * 59.99961 * 15 13 12 46 46 H 1.09001 * 109.47181 * 179.97438 * 15 13 12 47 47 H 1.08997 * 109.47241 * 299.99863 * 15 13 12 48 48 H 0.97004 * 119.99913 * 180.02562 * 19 18 16 49 49 H 1.09000 * 109.06057 * 78.37408 * 24 8 7 50 50 H 1.08999 * 109.06570 * 197.30013 * 24 8 7 51 51 H 1.09000 * 109.43707 * 337.92876 * 25 4 2 52 52 H 1.09007 * 109.43340 * 97.83982 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.7698 -2.1311 1.1127 6 6 2.7744 -2.9661 1.7988 7 6 2.7724 -2.6471 3.3151 8 7 3.3071 -1.3201 3.5306 9 6 4.6313 -1.1858 3.7422 10 8 5.1088 -0.0829 3.9267 11 7 5.4263 -2.2741 3.7503 12 6 6.8648 -2.1287 3.9863 13 6 7.5292 -3.5065 3.9511 14 6 6.9209 -4.3941 5.0389 15 6 7.2994 -4.1487 2.5815 16 6 9.0089 -3.3571 4.1945 17 1 9.4387 -2.3745 4.3212 18 6 9.8139 -4.4748 4.2553 19 7 9.3176 -5.6589 3.9703 20 14 11.6093 -4.3072 4.7428 21 1 11.7526 -4.5602 6.1990 22 1 12.4216 -5.2941 3.9867 23 1 12.0810 -2.9344 4.4301 24 6 2.4645 -0.1060 3.5348 25 6 1.4213 -0.1419 2.3971 26 1 -0.3633 0.5916 0.8404 27 1 -0.3634 0.4321 -0.9324 28 1 -0.3634 -1.0234 0.0921 29 1 1.8933 -0.5139 -0.8901 30 1 1.6985 1.9486 -0.9028 31 1 1.6554 1.9638 0.8765 32 1 3.1298 1.4425 0.0264 33 1 1.7443 -2.4151 0.0606 34 1 0.7925 -2.3372 1.5491 35 1 3.7615 -2.7584 1.3859 36 1 2.5330 -4.0185 1.6494 37 1 3.3886 -3.3767 3.8405 38 1 1.7517 -2.6934 3.6945 39 1 5.0453 -3.1540 3.6034 40 1 7.2981 -1.4965 3.2113 41 1 7.0285 -1.6714 4.9620 42 1 5.8660 -4.5627 4.8225 43 1 7.4443 -5.3499 5.0628 44 1 7.0192 -3.9018 6.0064 45 1 7.7327 -3.5164 1.8064 46 1 7.7731 -5.1300 2.5562 47 1 6.2291 -4.2568 2.4058 48 1 9.8839 -6.4453 4.0135 49 1 1.9496 -0.0334 4.4927 50 1 3.1010 0.7695 3.4069 51 1 1.0701 0.8699 2.1948 52 1 0.5795 -0.7641 2.7010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332008422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:28 Heat of formation + Delta-G solvation = -18.221854 kcal Electronic energy + Delta-G solvation = -28156.655429 eV Core-core repulsion = 24577.530007 eV Total energy + Delta-G solvation = -3579.125423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37284 -38.88156 -36.44240 -35.61298 -33.33078 -32.96446 -31.76079 -30.55049 -27.86189 -27.37425 -25.91086 -25.66095 -25.45252 -24.69455 -22.48901 -21.64964 -19.83270 -19.02880 -18.77294 -17.70794 -16.52786 -16.43277 -15.74764 -15.31693 -14.93506 -14.66698 -14.59617 -14.45559 -13.82787 -13.70073 -13.43287 -13.26200 -12.95425 -12.80070 -12.52174 -12.42385 -12.31716 -12.13915 -12.06276 -11.59582 -11.50206 -11.33334 -11.28645 -11.11011 -10.95336 -10.85786 -10.79763 -10.70309 -10.63562 -10.32351 -10.13626 -9.56239 -9.51848 -9.20774 -8.74545 -8.47484 -8.39617 -8.31532 -7.95115 -5.97642 -4.06305 3.12292 3.31758 3.39045 3.43762 3.68466 3.80997 4.41156 4.54680 4.60077 4.69398 4.77793 4.87765 4.94880 5.03714 5.11251 5.25772 5.28843 5.29935 5.33627 5.39978 5.49241 5.58235 5.62918 5.64644 5.74911 5.77555 5.84334 5.95449 6.03877 6.10843 6.25700 6.31310 6.46517 6.58216 6.83712 6.88541 6.90477 6.99391 7.04969 7.08576 7.10650 7.23850 7.39130 7.50663 7.61566 7.75295 8.07276 8.19516 8.45643 8.60560 8.93800 9.22399 9.58800 11.03689 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.003110 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.676252 B = 9000.080840 C = 9139.326172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 C -0.144 4.144 4 N -0.522 5.522 5 C 0.066 3.934 6 C -0.142 4.142 7 C 0.117 3.883 8 N -0.617 5.617 9 C 0.700 3.300 10 O -0.602 6.602 11 N -0.734 5.734 12 C 0.150 3.850 13 C 0.056 3.944 14 C -0.129 4.129 15 C -0.128 4.128 16 C -0.504 4.504 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.892 3.108 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 C 0.140 3.860 25 C 0.042 3.958 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.393 0.607 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.006 0.994 43 H 0.082 0.918 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.086 0.914 47 H 0.004 0.996 48 H 0.259 0.741 49 H 0.055 0.945 50 H 0.091 0.909 51 H 0.081 0.919 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.332 5.966 -6.279 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 C -0.202 4.202 4 N -0.246 5.246 5 C -0.061 4.061 6 C -0.182 4.182 7 C -0.008 4.008 8 N -0.354 5.354 9 C 0.401 3.599 10 O -0.481 6.481 11 N -0.390 5.390 12 C 0.027 3.973 13 C 0.056 3.944 14 C -0.187 4.187 15 C -0.186 4.186 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.720 3.280 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 C 0.016 3.984 25 C -0.087 4.087 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.229 0.771 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.101 0.899 44 H 0.044 0.956 45 H 0.045 0.955 46 H 0.105 0.895 47 H 0.023 0.977 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.110 0.890 51 H 0.099 0.901 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.397 6.647 -6.126 21.400 hybrid contribution -0.172 -0.623 0.080 0.652 sum -19.569 6.024 -6.046 21.349 Atomic orbital electron populations 1.22538 0.97631 1.01825 1.02325 1.21811 0.92332 0.95804 0.93033 1.21859 1.02473 0.94563 1.01272 1.60984 1.59082 1.02997 1.01495 1.20919 0.97114 0.87682 1.00433 1.21515 1.01435 0.98918 0.96318 1.21410 0.99522 0.84466 0.95429 1.46676 1.06067 1.06383 1.76247 1.16037 0.80850 0.84981 0.78003 1.90842 1.74062 1.25020 1.58191 1.45650 1.09440 1.07767 1.76149 1.21539 0.76182 1.00036 0.99524 1.18351 0.94569 0.88671 0.92854 1.21788 0.95914 1.03207 0.97745 1.21833 0.95836 1.03700 0.97219 1.21016 0.91365 0.93049 1.48817 0.92392 1.24873 0.98338 0.95326 0.94961 1.69827 1.35753 0.98353 1.48492 0.86581 0.85003 0.77937 0.78508 1.20791 1.21367 1.19857 1.21747 0.92482 0.88296 0.95901 1.22514 0.95193 1.00324 0.90664 0.92379 0.92211 0.92770 0.90102 0.92439 0.92622 0.91492 0.91920 0.94955 0.90344 0.90348 0.90739 0.91204 0.77061 0.93130 0.93197 0.97541 0.89897 0.95564 0.95546 0.89496 0.97747 0.93104 0.92684 0.89047 0.90079 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.60 37.16 0.32 -0.99 16 2 C 0.08 0.70 2.80 -67.72 -0.19 0.51 16 3 C -0.14 -1.28 9.15 37.15 0.34 -0.94 16 4 N -0.52 -5.52 4.12 -231.33 -0.95 -6.48 16 5 C 0.07 0.64 4.11 -6.80 -0.03 0.61 16 6 C -0.14 -1.53 6.02 -28.34 -0.17 -1.70 16 7 C 0.12 1.35 5.22 -3.99 -0.02 1.33 16 8 N -0.62 -8.99 2.53 -177.72 -0.45 -9.43 16 9 C 0.70 13.39 8.22 -86.92 -0.71 12.67 16 10 O -0.60 -13.79 15.62 5.28 0.08 -13.70 16 11 N -0.73 -14.04 4.82 -65.23 -0.31 -14.35 16 12 C 0.15 3.37 4.50 -4.04 -0.02 3.35 16 13 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 14 C -0.13 -2.95 8.05 37.16 0.30 -2.65 16 15 C -0.13 -2.96 8.10 37.16 0.30 -2.66 16 16 C -0.50 -13.46 8.01 -34.44 -0.28 -13.74 16 17 H 0.06 1.57 7.75 -52.49 -0.41 1.16 16 18 C 0.07 1.76 5.10 -17.82 -0.09 1.67 16 19 N -0.89 -23.82 9.39 55.43 0.52 -23.30 16 20 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.14 1.76 6.49 -2.60 -0.02 1.74 16 25 C 0.04 0.41 4.11 -4.23 -0.02 0.39 16 26 H 0.06 0.40 6.72 -51.92 -0.35 0.05 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.39 7.26 -51.93 -0.38 0.01 16 29 H 0.08 0.74 7.73 -51.93 -0.40 0.33 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.48 6.45 -51.93 -0.33 0.14 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.57 7.43 -51.93 -0.39 0.19 16 34 H 0.03 0.28 6.95 -51.93 -0.36 -0.08 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.07 0.90 6.13 -51.93 -0.32 0.58 16 38 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.39 6.83 3.77 -40.82 -0.15 6.68 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.01 0.11 6.98 -51.93 -0.36 -0.25 16 43 H 0.08 2.09 6.05 -51.93 -0.31 1.77 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 2.20 6.01 -51.93 -0.31 1.89 16 47 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 48 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 1.37 6.96 -51.93 -0.36 1.01 16 51 H 0.08 0.70 5.02 -51.93 -0.26 0.44 16 52 H 0.04 0.35 7.13 -51.93 -0.37 -0.02 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -29.82 379.36 -9.99 -39.81 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -9.21 Total: 4.92 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.36 Total: 0.86 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -1.20 Total: -53.56 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.82 -9.99 -39.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332008422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.583 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds