Wall clock time and date at job start Tue Mar 31 2020 10:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47521 * 2 1 4 4 N 1.46899 * 109.47190 * 120.00749 * 2 1 3 5 5 C 1.46261 * 111.00391 * 70.74019 * 4 2 1 6 6 C 1.47546 * 114.37307 * 148.55939 * 5 4 2 7 7 C 1.54944 * 109.73728 * 62.22125 * 6 5 4 8 8 N 1.44675 * 109.51907 * 290.51805 * 7 6 5 9 9 C 1.34769 * 118.55014 * 269.08389 * 8 7 6 10 10 O 1.21593 * 120.00474 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99990 * 359.97438 * 9 8 7 12 12 C 1.46503 * 119.99994 * 180.27634 * 11 9 8 13 13 C 1.53002 * 109.46824 * 179.72420 * 12 11 9 14 14 C 1.52998 * 109.47504 * 300.00388 * 13 12 11 15 15 C 1.53001 * 109.46975 * 60.00190 * 13 12 11 16 16 C 1.50701 * 109.46900 * 180.02562 * 13 12 11 17 17 H 1.07994 * 119.99977 * 357.71148 * 16 13 12 18 18 C 1.37881 * 119.99926 * 177.71989 * 16 13 12 19 19 N 1.31518 * 119.99969 * 6.74500 * 18 16 13 20 20 Si 1.86797 * 119.99921 * 186.75203 * 18 16 13 21 21 H 1.48496 * 109.47074 * 94.99100 * 20 18 16 22 22 H 1.48503 * 109.46861 * 214.98516 * 20 18 16 23 23 H 1.48493 * 109.47024 * 334.98910 * 20 18 16 24 24 C 1.47783 * 122.90391 * 89.35627 * 8 7 6 25 25 C 1.44771 * 110.99647 * 307.24684 * 4 2 1 26 26 H 1.09009 * 109.46633 * 305.14292 * 1 2 3 27 27 H 1.08998 * 109.47388 * 65.13493 * 1 2 3 28 28 H 1.08993 * 109.47487 * 185.14316 * 1 2 3 29 29 H 1.09006 * 109.46639 * 240.00045 * 2 1 3 30 30 H 1.08998 * 109.47446 * 298.53107 * 3 2 1 31 31 H 1.09003 * 109.46905 * 58.52835 * 3 2 1 32 32 H 1.09000 * 109.47329 * 178.52761 * 3 2 1 33 33 H 1.09001 * 108.50245 * 27.29420 * 5 4 2 34 34 H 1.08997 * 108.38306 * 269.73807 * 5 4 2 35 35 H 1.09001 * 109.42721 * 302.13724 * 6 5 4 36 36 H 1.09007 * 109.38064 * 182.27766 * 6 5 4 37 37 H 1.08997 * 109.46329 * 170.50284 * 7 6 5 38 38 H 1.08996 * 109.45731 * 50.52761 * 7 6 5 39 39 H 0.96997 * 119.99695 * 0.02562 * 11 9 8 40 40 H 1.08996 * 109.47340 * 299.72567 * 12 11 9 41 41 H 1.08995 * 109.47033 * 59.73239 * 12 11 9 42 42 H 1.09002 * 109.47177 * 64.15351 * 14 13 12 43 43 H 1.08998 * 109.47615 * 184.15975 * 14 13 12 44 44 H 1.08998 * 109.46823 * 304.15487 * 14 13 12 45 45 H 1.09004 * 109.47437 * 59.99961 * 15 13 12 46 46 H 1.09001 * 109.47181 * 179.97438 * 15 13 12 47 47 H 1.08997 * 109.47241 * 299.99863 * 15 13 12 48 48 H 0.97004 * 119.99913 * 180.02562 * 19 18 16 49 49 H 1.09000 * 109.06057 * 78.37408 * 24 8 7 50 50 H 1.08999 * 109.06570 * 197.30013 * 24 8 7 51 51 H 1.09000 * 109.43707 * 337.92876 * 25 4 2 52 52 H 1.09007 * 109.43340 * 97.83982 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.7698 -2.1311 1.1127 6 6 2.7744 -2.9661 1.7988 7 6 2.7724 -2.6471 3.3151 8 7 3.3071 -1.3201 3.5306 9 6 4.6313 -1.1858 3.7422 10 8 5.1088 -0.0829 3.9267 11 7 5.4263 -2.2741 3.7503 12 6 6.8648 -2.1287 3.9863 13 6 7.5292 -3.5065 3.9511 14 6 6.9209 -4.3941 5.0389 15 6 7.2994 -4.1487 2.5815 16 6 9.0089 -3.3571 4.1945 17 1 9.4387 -2.3745 4.3212 18 6 9.8139 -4.4748 4.2553 19 7 9.3176 -5.6589 3.9703 20 14 11.6093 -4.3072 4.7428 21 1 11.7526 -4.5602 6.1990 22 1 12.4216 -5.2941 3.9867 23 1 12.0810 -2.9344 4.4301 24 6 2.4645 -0.1060 3.5348 25 6 1.4213 -0.1419 2.3971 26 1 -0.3633 0.5916 0.8404 27 1 -0.3634 0.4321 -0.9324 28 1 -0.3634 -1.0234 0.0921 29 1 1.8933 -0.5139 -0.8901 30 1 1.6985 1.9486 -0.9028 31 1 1.6554 1.9638 0.8765 32 1 3.1298 1.4425 0.0264 33 1 1.7443 -2.4151 0.0606 34 1 0.7925 -2.3372 1.5491 35 1 3.7615 -2.7584 1.3859 36 1 2.5330 -4.0185 1.6494 37 1 3.3886 -3.3767 3.8405 38 1 1.7517 -2.6934 3.6945 39 1 5.0453 -3.1540 3.6034 40 1 7.2981 -1.4965 3.2113 41 1 7.0285 -1.6714 4.9620 42 1 5.8660 -4.5627 4.8225 43 1 7.4443 -5.3499 5.0628 44 1 7.0192 -3.9018 6.0064 45 1 7.7327 -3.5164 1.8064 46 1 7.7731 -5.1300 2.5562 47 1 6.2291 -4.2568 2.4058 48 1 9.8839 -6.4453 4.0135 49 1 1.9496 -0.0334 4.4927 50 1 3.1010 0.7695 3.4069 51 1 1.0701 0.8699 2.1948 52 1 0.5795 -0.7641 2.7010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332008422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:28 Heat of formation + Delta-G solvation = -35.910968 kcal Electronic energy + Delta-G solvation = -28157.422487 eV Core-core repulsion = 24577.530007 eV Total energy + Delta-G solvation = -3579.892480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56100 -39.97511 -38.19129 -36.79725 -35.00338 -33.95721 -33.01248 -32.08224 -28.86775 -28.01042 -27.55609 -27.41872 -26.81268 -26.42126 -23.55443 -22.54991 -20.93597 -20.60039 -20.11375 -19.01084 -17.83636 -17.56833 -17.26133 -16.60179 -16.47515 -16.17408 -15.65952 -15.22896 -15.20231 -14.88516 -14.79908 -14.61743 -14.21722 -14.05991 -13.94208 -13.56300 -13.26258 -13.16657 -13.07833 -13.00825 -12.93951 -12.65913 -12.58356 -12.38479 -12.36906 -12.23756 -12.11301 -12.07611 -11.76477 -11.58427 -11.47945 -11.47076 -11.23830 -10.98709 -10.71269 -10.36228 -10.00420 -9.30773 -9.10338 -8.01642 -6.16299 1.43121 1.46040 1.54783 1.84125 2.30851 2.47322 2.91626 3.20897 3.22314 3.87670 3.95428 4.02256 4.02902 4.15523 4.28195 4.39502 4.41276 4.47505 4.54617 4.59020 4.63596 4.68054 4.72173 4.76865 4.84775 4.89775 4.92842 4.93979 4.97299 5.02138 5.04098 5.06625 5.13411 5.14301 5.21197 5.33453 5.35074 5.41066 5.42562 5.66876 5.67546 5.69293 5.79066 6.05211 6.15892 6.23244 6.32589 6.34860 6.45950 6.87221 7.15589 7.50829 7.72219 8.97514 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.003110 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.676252 B = 9000.080840 C = 9139.326172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 C -0.141 4.141 4 N -0.549 5.549 5 C 0.065 3.935 6 C -0.137 4.137 7 C 0.110 3.890 8 N -0.605 5.605 9 C 0.694 3.306 10 O -0.647 6.647 11 N -0.727 5.727 12 C 0.169 3.831 13 C 0.054 3.946 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.530 4.530 17 H 0.042 0.958 18 C 0.030 3.970 19 N -0.897 5.897 20 Si 0.945 3.055 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.277 1.277 24 C 0.134 3.866 25 C 0.053 3.947 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.403 0.597 40 H 0.028 0.972 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.013 0.987 46 H 0.066 0.934 47 H 0.032 0.968 48 H 0.261 0.739 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.092 0.908 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.972 5.188 -6.597 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.029 4.029 3 C -0.199 4.199 4 N -0.273 5.273 5 C -0.062 4.062 6 C -0.176 4.176 7 C -0.014 4.014 8 N -0.341 5.341 9 C 0.395 3.605 10 O -0.530 6.530 11 N -0.384 5.384 12 C 0.044 3.956 13 C 0.053 3.947 14 C -0.176 4.176 15 C -0.173 4.173 16 C -0.569 4.569 17 H 0.061 0.939 18 C -0.170 4.170 19 N -0.536 5.536 20 Si 0.771 3.229 21 H -0.204 1.204 22 H -0.208 1.208 23 H -0.202 1.202 24 C 0.011 3.989 25 C -0.076 4.076 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.241 0.759 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.038 0.962 45 H 0.032 0.968 46 H 0.085 0.915 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.091 0.909 50 H 0.078 0.922 51 H 0.110 0.890 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.097 5.838 -6.462 23.751 hybrid contribution 0.618 -0.355 0.154 0.729 sum -21.479 5.484 -6.308 23.048 Atomic orbital electron populations 1.22433 0.95688 1.02240 1.03005 1.21795 0.93778 0.95132 0.92161 1.21837 1.00563 0.95274 1.02210 1.60906 1.60279 1.03828 1.02312 1.20922 0.97525 0.86935 1.00816 1.21497 1.00046 1.00717 0.95333 1.21694 1.00931 0.82457 0.96308 1.46760 1.04356 1.08408 1.74571 1.16256 0.82343 0.84028 0.77881 1.90809 1.75380 1.26611 1.60158 1.45355 1.08111 1.08493 1.76435 1.21077 0.78071 0.98735 0.97711 1.18338 0.93424 0.89404 0.93536 1.21623 0.97331 1.01554 0.97051 1.21652 0.97358 1.01955 0.96367 1.21271 0.93294 0.92610 1.49696 0.93925 1.25432 1.01492 0.95148 0.94893 1.69917 1.36712 0.98583 1.48376 0.85755 0.81209 0.77621 0.78280 1.20367 1.20767 1.20226 1.21957 0.92361 0.86244 0.98339 1.22425 0.94362 1.01525 0.89310 0.91936 0.91365 0.92366 0.90628 0.90879 0.92351 0.94351 0.91431 0.92866 0.93739 0.87919 0.91125 0.88006 0.75861 0.95388 0.94971 0.94617 0.91973 0.96196 0.96806 0.91492 0.94909 0.92965 0.90861 0.92219 0.88951 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 8.60 71.98 0.62 -1.31 16 2 C 0.08 1.26 2.80 44.91 0.13 1.38 16 3 C -0.14 -2.39 9.15 71.98 0.66 -1.73 16 4 N -0.55 -10.56 4.12 -885.80 -3.65 -14.21 16 5 C 0.07 1.07 4.11 84.72 0.35 1.42 16 6 C -0.14 -2.60 6.02 29.55 0.18 -2.42 16 7 C 0.11 2.24 5.22 87.38 0.46 2.70 16 8 N -0.61 -16.94 2.53 -834.43 -2.11 -19.05 16 9 C 0.69 26.76 8.22 179.06 1.47 28.24 16 10 O -0.65 -30.68 15.62 -4.01 -0.06 -30.74 16 11 N -0.73 -27.84 4.82 -478.53 -2.31 -30.15 16 12 C 0.17 7.77 4.50 86.38 0.39 8.16 16 13 C 0.05 2.58 0.50 -52.93 -0.03 2.55 16 14 C -0.12 -5.35 8.05 71.98 0.58 -4.77 16 15 C -0.12 -5.33 8.10 71.98 0.58 -4.75 16 16 C -0.53 -28.92 8.01 25.60 0.20 -28.72 16 17 H 0.04 2.39 7.75 -2.91 -0.02 2.37 16 18 C 0.03 1.62 5.10 84.65 0.43 2.05 16 19 N -0.90 -48.30 9.39 21.45 0.20 -48.09 16 20 Si 0.94 43.31 29.54 68.60 2.03 45.34 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 24 C 0.13 3.21 6.49 86.61 0.56 3.77 16 25 C 0.05 0.89 4.11 87.18 0.36 1.25 16 26 H 0.06 0.65 6.72 -2.38 -0.02 0.63 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.62 7.26 -2.39 -0.02 0.60 16 29 H 0.08 1.27 7.73 -2.38 -0.02 1.25 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.93 6.45 -2.39 -0.02 0.92 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.05 7.43 -2.39 -0.02 1.03 16 34 H 0.05 0.67 6.95 -2.39 -0.02 0.66 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.07 1.52 6.13 -2.39 -0.01 1.50 16 38 H 0.10 1.50 8.09 -2.39 -0.02 1.48 16 39 H 0.40 13.56 3.77 -92.71 -0.35 13.21 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.03 1.36 6.98 -2.39 -0.02 1.35 16 43 H 0.06 3.10 6.05 -2.39 -0.01 3.09 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.07 3.39 6.01 -2.39 -0.01 3.37 16 47 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 48 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 49 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 50 H 0.06 1.82 6.96 -2.39 -0.02 1.81 16 51 H 0.09 1.36 5.02 -2.39 -0.01 1.34 16 52 H 0.06 0.81 7.13 -2.38 -0.02 0.79 16 Total: -1.00 -66.22 379.36 1.59 -64.64 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.54 Total: 24.43 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.94 Total: 7.83 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -7.86 Total: -111.50 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.06 Total: -30.74 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -66.22 1.59 -64.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332008422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.726 kcal (2) G-P(sol) polarization free energy of solvation -66.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds