Wall clock time and date at job start Tue Mar 31 2020 09:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99307 * 2 1 4 4 H 1.48504 * 109.47023 * 270.00003 * 3 2 1 5 5 H 1.48498 * 109.47403 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.47178 * 150.00205 * 3 2 1 7 7 C 1.37873 * 120.00656 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99419 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00453 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47679 * 180.02562 * 9 7 2 11 11 N 1.46490 * 109.47432 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00131 * 179.97438 * 11 10 9 13 13 O 1.21591 * 120.00195 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00267 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00376 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47299 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46886 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.52992 * 109.47482 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.47859 * 179.97438 * 19 18 17 21 21 C 1.46848 * 110.99510 * 294.21467 * 20 19 18 22 22 C 1.53048 * 109.52064 * 174.15537 * 21 20 19 23 23 C 1.53118 * 109.27745 * 59.17773 * 22 21 20 24 24 C 1.53120 * 109.16026 * 302.34502 * 23 22 21 25 25 C 1.46844 * 111.00526 * 170.00090 * 20 19 18 26 26 H 0.96993 * 120.00568 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47016 * 59.99752 * 9 7 2 28 28 H 1.09004 * 109.47170 * 300.00205 * 9 7 2 29 29 H 1.09004 * 109.46803 * 59.99387 * 10 9 7 30 30 H 1.09004 * 109.46545 * 299.99818 * 10 9 7 31 31 H 0.97004 * 120.00364 * 359.97438 * 11 10 9 32 32 H 0.97003 * 119.99640 * 0.02562 * 14 12 11 33 33 H 1.09001 * 109.46596 * 59.99898 * 15 14 12 34 34 H 1.09002 * 109.47129 * 300.00253 * 15 14 12 35 35 H 1.09001 * 109.46652 * 60.00269 * 16 15 14 36 36 H 1.08992 * 109.47514 * 300.00358 * 16 15 14 37 37 H 1.09002 * 109.47398 * 300.00496 * 17 16 15 38 38 H 1.09001 * 109.47194 * 60.00677 * 17 16 15 39 39 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 40 40 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 41 41 H 1.09002 * 109.47103 * 300.00247 * 19 18 17 42 42 H 1.09001 * 109.47066 * 60.00169 * 19 18 17 43 43 H 1.08996 * 109.46339 * 294.16557 * 21 20 19 44 44 H 1.08994 * 109.46869 * 54.14232 * 21 20 19 45 45 H 1.08998 * 109.49998 * 299.23732 * 22 21 20 46 46 H 1.08994 * 109.50211 * 179.11499 * 22 21 20 47 47 H 1.08999 * 109.52068 * 182.44201 * 23 22 21 48 48 H 1.09002 * 109.52451 * 62.24612 * 23 22 21 49 49 H 1.09004 * 109.50479 * 297.71302 * 24 23 22 50 50 H 1.08998 * 109.50625 * 177.59615 * 24 23 22 51 51 H 1.09003 * 109.46077 * 305.85847 * 25 20 19 52 52 H 1.08997 * 109.46142 * 65.82327 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0218 -2.6363 0.0010 11 7 5.4867 -2.6362 0.0009 12 6 6.1607 -3.8033 0.0014 13 8 5.5529 -4.8564 0.0013 14 7 7.5085 -3.8032 0.0018 15 6 8.2411 -5.0719 0.0017 16 6 9.7453 -4.7921 0.0017 17 6 10.5104 -6.1171 0.0022 18 6 12.0146 -5.8375 0.0028 19 6 12.7797 -7.1623 0.0027 20 7 14.2240 -6.8939 0.0027 21 6 14.6385 -6.2448 -1.2477 22 6 16.1141 -5.8496 -1.1540 23 6 16.9580 -7.1024 -0.9032 24 6 16.4742 -7.7860 0.3787 25 6 14.9882 -8.1250 0.2406 26 1 -0.4850 0.8399 -0.0004 27 1 3.8746 -0.6798 0.8911 28 1 3.8753 -0.6802 -0.8888 29 1 3.6588 -3.1500 -0.8892 30 1 3.6582 -3.1503 0.8908 31 1 5.9717 -1.7961 0.0006 32 1 7.9934 -2.9631 0.0023 33 1 7.9781 -5.6431 -0.8886 34 1 7.9775 -5.6438 0.8914 35 1 10.0086 -4.2206 0.8918 36 1 10.0086 -4.2205 -0.8881 37 1 10.2470 -6.6885 0.8923 38 1 10.2473 -6.6890 -0.8877 39 1 12.2783 -5.2659 -0.8871 40 1 12.2776 -5.2658 0.8928 41 1 12.5161 -7.7342 0.8924 42 1 12.5168 -7.7336 -0.8876 43 1 14.4998 -6.9360 -2.0790 44 1 14.0336 -5.3532 -1.4120 45 1 16.2513 -5.1477 -0.3314 46 1 16.4256 -5.3821 -2.0880 47 1 18.0050 -6.8201 -0.7926 48 1 16.8513 -7.7878 -1.7440 49 1 16.6171 -7.1145 1.2254 50 1 17.0429 -8.7018 0.5397 51 1 14.6371 -8.5990 1.1572 52 1 14.8478 -8.8074 -0.5977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343884843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:39 Heat of formation + Delta-G solvation = -65.820147 kcal Electronic energy + Delta-G solvation = -24542.309529 eV Core-core repulsion = 20961.120089 eV Total energy + Delta-G solvation = -3581.189440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.65392 -39.51011 -36.73304 -35.17200 -34.57619 -33.16404 -32.67109 -31.35203 -30.40706 -29.32391 -26.17934 -24.72480 -23.76049 -23.37590 -21.70136 -21.28961 -20.75082 -20.49670 -20.16877 -17.92965 -16.86465 -16.57567 -16.38261 -15.87557 -15.59655 -15.21295 -14.93816 -14.77270 -14.35838 -14.14625 -14.01310 -13.90275 -13.79166 -13.61768 -13.30415 -13.04146 -12.67462 -12.58254 -12.35139 -12.24716 -11.70434 -11.56371 -11.47042 -11.43996 -11.31720 -11.20090 -11.13731 -10.94099 -10.81748 -10.60880 -10.36008 -10.24146 -9.95583 -9.73118 -9.30103 -9.03214 -8.77875 -8.60656 -8.34179 -6.09010 -4.08897 3.00708 3.26496 3.34066 3.35480 3.39626 3.56839 4.27594 4.31588 4.39465 4.40758 4.49324 4.56379 4.60352 4.68441 4.77638 4.84129 4.92092 4.99531 5.09187 5.12565 5.14989 5.20688 5.23966 5.29886 5.34401 5.39053 5.46889 5.47108 5.49619 5.57705 5.63510 5.70639 5.72047 5.83015 5.88686 5.98311 6.01288 6.12669 6.28028 6.58046 6.63233 6.64403 6.64774 6.85594 7.08317 7.27474 7.33573 7.69851 8.33887 8.48569 8.94271 8.97011 9.51198 11.04102 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.036341 B = 0.001433 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.304856 B =19529.509288 C =20112.983688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.743 5.743 12 C 0.698 3.302 13 O -0.596 6.596 14 N -0.755 5.755 15 C 0.139 3.861 16 C -0.129 4.129 17 C -0.115 4.115 18 C -0.115 4.115 19 C 0.054 3.946 20 N -0.539 5.539 21 C 0.052 3.948 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.117 4.117 25 C 0.055 3.945 26 H 0.264 0.736 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.391 0.609 32 H 0.393 0.607 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.065 0.935 51 H 0.074 0.926 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.754 -13.039 -1.024 39.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.397 5.397 12 C 0.398 3.602 13 O -0.474 6.474 14 N -0.411 5.411 15 C 0.015 3.985 16 C -0.167 4.167 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.073 4.073 20 N -0.264 5.264 21 C -0.076 4.076 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.073 4.073 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.226 0.774 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 36.081 -13.603 -0.639 38.565 hybrid contribution 0.594 1.154 -0.715 1.482 sum 36.675 -12.449 -1.354 38.754 Atomic orbital electron populations 1.69903 1.06286 1.27020 1.50536 1.24994 0.94750 0.99114 0.94400 0.86746 0.80256 0.83564 0.78456 1.20269 1.21292 1.19114 1.20929 0.88672 0.94921 1.51517 0.90580 1.19795 0.97914 0.91467 0.96768 1.21366 0.74833 0.99799 1.01475 1.45520 1.08916 1.06249 1.78986 1.16054 0.81330 0.84814 0.78048 1.90903 1.67800 1.30608 1.58118 1.45145 1.05041 1.09236 1.81727 1.21129 0.89800 0.85423 1.02187 1.21777 0.93833 0.98323 1.02779 1.21453 0.94197 0.97069 1.02680 1.21595 0.93838 0.97019 1.02821 1.22137 0.86802 0.97478 1.00918 1.61923 1.04157 1.25253 1.35083 1.22155 0.96533 0.98992 0.89939 1.21593 0.94067 0.97877 1.02028 1.21588 0.99411 0.97257 0.97766 1.21587 0.94758 1.00670 0.98490 1.22083 0.94081 0.90586 1.00555 0.92574 0.96035 0.96485 0.92202 0.92165 0.77613 0.77360 0.91932 0.91856 0.91215 0.91369 0.91418 0.91681 0.91903 0.90965 0.90664 0.94887 0.95094 0.90332 0.91040 0.91602 0.91811 0.92391 0.91036 0.91620 0.90756 0.95072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.12 16 8 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 9 C -0.02 -0.50 4.15 -27.89 -0.12 -0.62 16 10 C 0.15 3.12 5.61 -4.05 -0.02 3.10 16 11 N -0.74 -12.71 5.56 -65.23 -0.36 -13.07 16 12 C 0.70 12.13 8.57 -86.92 -0.74 11.38 16 13 O -0.60 -12.97 16.34 5.29 0.09 -12.89 16 14 N -0.75 -9.27 5.56 -65.22 -0.36 -9.64 16 15 C 0.14 1.48 5.67 -4.04 -0.02 1.46 16 16 C -0.13 -0.91 5.33 -26.73 -0.14 -1.05 16 17 C -0.12 -0.72 5.21 -26.73 -0.14 -0.86 16 18 C -0.11 -0.68 5.14 -26.74 -0.14 -0.82 16 19 C 0.05 0.34 4.96 -3.83 -0.02 0.32 16 20 N -0.54 -3.60 4.66 -234.67 -1.09 -4.69 16 21 C 0.05 0.31 5.29 -3.83 -0.02 0.29 16 22 C -0.12 -0.63 6.09 -26.65 -0.16 -0.79 16 23 C -0.12 -0.61 6.00 -26.61 -0.16 -0.77 16 24 C -0.12 -0.60 6.09 -26.65 -0.16 -0.76 16 25 C 0.05 0.32 5.46 -3.83 -0.02 0.30 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.39 5.49 8.49 -40.82 -0.35 5.14 16 32 H 0.39 3.62 8.49 -40.82 -0.35 3.28 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.46 7.99 -51.93 -0.41 0.04 16 42 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 43 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.47 6.21 -51.93 -0.32 0.14 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.07 0.41 8.02 -51.93 -0.42 -0.01 16 52 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -33.55 406.25 -11.95 -45.50 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -10.14 Total: 0.98 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.30 Total: -2.03 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -1.04 Total: -54.16 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.55 -11.95 -45.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343884843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.324 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds