Wall clock time and date at job start Tue Mar 31 2020 09:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99307 * 2 1 4 4 H 1.48504 * 109.47023 * 270.00003 * 3 2 1 5 5 H 1.48498 * 109.47403 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.47178 * 150.00205 * 3 2 1 7 7 C 1.37873 * 120.00656 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99419 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00453 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47679 * 180.02562 * 9 7 2 11 11 N 1.46490 * 109.47432 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00131 * 179.97438 * 11 10 9 13 13 O 1.21591 * 120.00195 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00267 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00376 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47299 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46886 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.52992 * 109.47482 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.47859 * 179.97438 * 19 18 17 21 21 C 1.46848 * 110.99510 * 294.21467 * 20 19 18 22 22 C 1.53048 * 109.52064 * 174.15537 * 21 20 19 23 23 C 1.53118 * 109.27745 * 59.17773 * 22 21 20 24 24 C 1.53120 * 109.16026 * 302.34502 * 23 22 21 25 25 C 1.46844 * 111.00526 * 170.00090 * 20 19 18 26 26 H 0.96993 * 120.00568 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47016 * 59.99752 * 9 7 2 28 28 H 1.09004 * 109.47170 * 300.00205 * 9 7 2 29 29 H 1.09004 * 109.46803 * 59.99387 * 10 9 7 30 30 H 1.09004 * 109.46545 * 299.99818 * 10 9 7 31 31 H 0.97004 * 120.00364 * 359.97438 * 11 10 9 32 32 H 0.97003 * 119.99640 * 0.02562 * 14 12 11 33 33 H 1.09001 * 109.46596 * 59.99898 * 15 14 12 34 34 H 1.09002 * 109.47129 * 300.00253 * 15 14 12 35 35 H 1.09001 * 109.46652 * 60.00269 * 16 15 14 36 36 H 1.08992 * 109.47514 * 300.00358 * 16 15 14 37 37 H 1.09002 * 109.47398 * 300.00496 * 17 16 15 38 38 H 1.09001 * 109.47194 * 60.00677 * 17 16 15 39 39 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 40 40 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 41 41 H 1.09002 * 109.47103 * 300.00247 * 19 18 17 42 42 H 1.09001 * 109.47066 * 60.00169 * 19 18 17 43 43 H 1.08996 * 109.46339 * 294.16557 * 21 20 19 44 44 H 1.08994 * 109.46869 * 54.14232 * 21 20 19 45 45 H 1.08998 * 109.49998 * 299.23732 * 22 21 20 46 46 H 1.08994 * 109.50211 * 179.11499 * 22 21 20 47 47 H 1.08999 * 109.52068 * 182.44201 * 23 22 21 48 48 H 1.09002 * 109.52451 * 62.24612 * 23 22 21 49 49 H 1.09004 * 109.50479 * 297.71302 * 24 23 22 50 50 H 1.08998 * 109.50625 * 177.59615 * 24 23 22 51 51 H 1.09003 * 109.46077 * 305.85847 * 25 20 19 52 52 H 1.08997 * 109.46142 * 65.82327 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0218 -2.6363 0.0010 11 7 5.4867 -2.6362 0.0009 12 6 6.1607 -3.8033 0.0014 13 8 5.5529 -4.8564 0.0013 14 7 7.5085 -3.8032 0.0018 15 6 8.2411 -5.0719 0.0017 16 6 9.7453 -4.7921 0.0017 17 6 10.5104 -6.1171 0.0022 18 6 12.0146 -5.8375 0.0028 19 6 12.7797 -7.1623 0.0027 20 7 14.2240 -6.8939 0.0027 21 6 14.6385 -6.2448 -1.2477 22 6 16.1141 -5.8496 -1.1540 23 6 16.9580 -7.1024 -0.9032 24 6 16.4742 -7.7860 0.3787 25 6 14.9882 -8.1250 0.2406 26 1 -0.4850 0.8399 -0.0004 27 1 3.8746 -0.6798 0.8911 28 1 3.8753 -0.6802 -0.8888 29 1 3.6588 -3.1500 -0.8892 30 1 3.6582 -3.1503 0.8908 31 1 5.9717 -1.7961 0.0006 32 1 7.9934 -2.9631 0.0023 33 1 7.9781 -5.6431 -0.8886 34 1 7.9775 -5.6438 0.8914 35 1 10.0086 -4.2206 0.8918 36 1 10.0086 -4.2205 -0.8881 37 1 10.2470 -6.6885 0.8923 38 1 10.2473 -6.6890 -0.8877 39 1 12.2783 -5.2659 -0.8871 40 1 12.2776 -5.2658 0.8928 41 1 12.5161 -7.7342 0.8924 42 1 12.5168 -7.7336 -0.8876 43 1 14.4998 -6.9360 -2.0790 44 1 14.0336 -5.3532 -1.4120 45 1 16.2513 -5.1477 -0.3314 46 1 16.4256 -5.3821 -2.0880 47 1 18.0050 -6.8201 -0.7926 48 1 16.8513 -7.7878 -1.7440 49 1 16.6171 -7.1145 1.2254 50 1 17.0429 -8.7018 0.5397 51 1 14.6371 -8.5990 1.1572 52 1 14.8478 -8.8074 -0.5977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343884843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:38 Heat of formation + Delta-G solvation = -89.216604 kcal Electronic energy + Delta-G solvation = -24543.324076 eV Core-core repulsion = 20961.120089 eV Total energy + Delta-G solvation = -3582.203986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98478 -39.99923 -37.53462 -36.57043 -35.59962 -34.78732 -33.79169 -32.03749 -31.74499 -30.27217 -27.20786 -26.12382 -24.40261 -23.91094 -22.66229 -22.37007 -22.05706 -21.53185 -20.60259 -19.32988 -18.86934 -17.25389 -17.11191 -16.95156 -16.55575 -16.27592 -15.94183 -15.55780 -15.38287 -15.31670 -15.25211 -15.04229 -14.58709 -14.54702 -14.30107 -14.14554 -13.64215 -13.34314 -13.30400 -13.03328 -12.91458 -12.83595 -12.18364 -12.16374 -12.14914 -12.08640 -11.97460 -11.90559 -11.74739 -11.60659 -11.52873 -11.43861 -11.29409 -11.21736 -11.03625 -10.77547 -10.35595 -9.71347 -9.26724 -8.28696 -6.36142 1.40270 1.43165 1.54455 1.77463 2.17150 2.38306 2.92003 3.06422 3.39626 3.81907 3.89704 3.94202 4.01277 4.06369 4.11846 4.26062 4.32217 4.36271 4.45506 4.46155 4.54802 4.58085 4.59083 4.64193 4.70059 4.76856 4.77371 4.85268 4.87512 4.94614 4.98723 5.04962 5.08826 5.11317 5.15039 5.22210 5.23409 5.30337 5.42705 5.43171 5.45977 5.46098 5.50334 5.55478 5.68073 6.06867 6.17176 6.18553 6.24658 6.71247 7.16938 7.28457 7.61859 8.88209 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.036341 B = 0.001433 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.304856 B =19529.509288 C =20112.983688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.540 4.540 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.164 3.836 11 N -0.732 5.732 12 C 0.694 3.306 13 O -0.645 6.645 14 N -0.732 5.732 15 C 0.137 3.863 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.106 4.106 19 C 0.054 3.946 20 N -0.548 5.548 21 C 0.051 3.949 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.115 4.115 25 C 0.053 3.947 26 H 0.268 0.732 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.411 0.589 32 H 0.413 0.587 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.065 0.935 50 H 0.075 0.925 51 H 0.076 0.924 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.136 -11.323 -1.084 41.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.049 4.049 10 C 0.039 3.961 11 N -0.387 5.387 12 C 0.394 3.606 13 O -0.527 6.527 14 N -0.389 5.389 15 C 0.013 3.987 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.143 4.143 19 C -0.073 4.073 20 N -0.273 5.273 21 C -0.077 4.077 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.153 4.153 25 C -0.075 4.075 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.247 0.753 32 H 0.249 0.751 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.094 0.906 51 H 0.094 0.906 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 39.549 -11.871 -0.698 41.298 hybrid contribution -0.492 0.495 -0.697 0.986 sum 39.057 -11.376 -1.395 40.704 Atomic orbital electron populations 1.70078 1.08622 1.28435 1.52006 1.26080 0.95674 1.03873 0.93611 0.85518 0.79665 0.77235 0.79310 1.19000 1.21274 1.15918 1.21265 0.91629 0.93403 1.51593 0.95371 1.19639 0.94330 0.92800 0.98107 1.20869 0.77286 0.98275 0.99661 1.45114 1.07247 1.07347 1.79013 1.16244 0.82732 0.83899 0.77761 1.90877 1.69246 1.32337 1.60220 1.44981 1.03171 1.10971 1.79776 1.21273 0.91885 0.84452 1.01126 1.21685 0.90838 0.98925 1.03861 1.21410 0.94325 0.96665 1.02632 1.21489 0.93314 0.96777 1.02763 1.22133 0.86814 0.97620 1.00764 1.61959 1.04357 1.25628 1.35378 1.22181 0.97094 0.98868 0.89564 1.21590 0.93664 0.97952 1.02236 1.21595 0.99768 0.97056 0.97593 1.21579 0.94357 1.01024 0.98356 1.22126 0.94565 0.90348 1.00482 0.92334 0.94410 0.94551 0.94190 0.94187 0.75313 0.75054 0.93075 0.93017 0.90140 0.90193 0.91526 0.91817 0.91631 0.91238 0.90659 0.95233 0.95569 0.90162 0.91613 0.90755 0.91078 0.92451 0.91634 0.90642 0.90595 0.95399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.96 42.31 27.47 68.60 1.88 44.19 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 7 C -0.54 -31.18 9.66 25.60 0.25 -30.93 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.49 4.15 29.85 0.12 -0.37 16 10 C 0.16 6.90 5.61 86.38 0.48 7.38 16 11 N -0.73 -23.72 5.56 -478.55 -2.66 -26.38 16 12 C 0.69 23.32 8.57 179.05 1.53 24.86 16 13 O -0.64 -28.32 16.34 -4.00 -0.07 -28.38 16 14 N -0.73 -16.35 5.56 -478.53 -2.66 -19.02 16 15 C 0.14 2.70 5.67 86.38 0.49 3.19 16 16 C -0.12 -1.32 5.33 30.59 0.16 -1.16 16 17 C -0.11 -1.20 5.21 30.59 0.16 -1.04 16 18 C -0.11 -1.07 5.14 30.59 0.16 -0.91 16 19 C 0.05 0.62 4.96 86.30 0.43 1.04 16 20 N -0.55 -6.72 4.66 -896.36 -4.17 -10.90 16 21 C 0.05 0.56 5.29 86.33 0.46 1.02 16 22 C -0.12 -1.09 6.09 30.65 0.19 -0.91 16 23 C -0.12 -1.05 6.00 30.67 0.18 -0.87 16 24 C -0.12 -1.05 6.09 30.65 0.19 -0.87 16 25 C 0.05 0.57 5.46 86.33 0.47 1.04 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 28 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 29 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.41 10.10 8.49 -92.71 -0.79 9.31 16 32 H 0.41 6.14 8.49 -92.71 -0.79 5.35 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.64 6.43 -2.39 -0.02 0.63 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.84 7.99 -2.39 -0.02 0.82 16 42 H 0.03 0.35 8.12 -2.39 -0.02 0.33 16 43 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.08 0.83 6.21 -2.39 -0.01 0.82 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 49 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 50 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.08 0.78 8.02 -2.39 -0.02 0.76 16 52 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -74.81 406.25 -2.40 -77.21 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.76 Total: 20.41 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 5.74 Total: 2.21 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -9.20 Total: -115.64 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.07 Total: -28.38 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Total: -74.81 -2.40 -77.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343884843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.009 kcal (2) G-P(sol) polarization free energy of solvation -74.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds