Wall clock time and date at job start Tue Mar 31 2020 10:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 C 1.53000 * 109.46920 * 239.99989 * 2 1 3 5 5 C 1.50697 * 109.46895 * 59.99942 * 4 2 1 6 6 H 1.07998 * 120.00300 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99611 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00216 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46994 * 89.99892 * 9 7 5 11 11 H 1.48493 * 109.47307 * 210.00260 * 9 7 5 12 12 H 1.48506 * 109.47010 * 330.00544 * 9 7 5 13 13 C 1.52998 * 109.47111 * 119.99973 * 2 1 3 14 14 N 1.46897 * 109.47222 * 300.00097 * 13 2 1 15 15 C 1.46905 * 111.00064 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.46837 * 179.97438 * 15 14 13 17 17 C 1.53007 * 109.46777 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.47221 * 180.02562 * 17 16 15 19 19 C 1.48539 * 110.99934 * 52.60222 * 18 17 16 20 20 C 1.54940 * 103.22513 * 159.72167 * 19 18 17 21 21 C 1.54590 * 102.92203 * 322.58801 * 20 19 18 22 22 C 1.47900 * 111.00131 * 169.99927 * 18 17 16 23 23 H 1.09002 * 109.91794 * 333.50785 * 22 18 17 24 24 C 1.50697 * 110.08124 * 94.71022 * 22 18 17 25 25 N 1.34773 * 120.00311 * 179.49053 * 24 22 18 26 26 O 1.21284 * 119.99960 * 359.49660 * 24 22 18 27 27 H 1.09005 * 109.47060 * 300.00086 * 1 2 3 28 28 H 1.08992 * 109.47371 * 59.99680 * 1 2 3 29 29 H 1.08996 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47100 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47071 * 300.00450 * 3 2 1 32 32 H 1.08999 * 109.46862 * 60.00146 * 3 2 1 33 33 H 1.08994 * 109.47110 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46869 * 300.00271 * 4 2 1 35 35 H 0.97000 * 120.00066 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.46911 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.47019 * 59.99520 * 13 2 1 38 38 H 1.00903 * 111.00235 * 303.95190 * 14 13 2 39 39 H 1.08992 * 109.47110 * 59.99624 * 15 14 13 40 40 H 1.08998 * 109.46664 * 299.99706 * 15 14 13 41 41 H 1.09000 * 109.47646 * 60.00250 * 16 15 14 42 42 H 1.08998 * 109.47395 * 299.99432 * 16 15 14 43 43 H 1.08992 * 109.47019 * 59.99891 * 17 16 15 44 44 H 1.08998 * 109.46816 * 299.99936 * 17 16 15 45 45 H 1.08998 * 110.66260 * 41.28731 * 19 18 17 46 46 H 1.09004 * 110.80689 * 278.22376 * 19 18 17 47 47 H 1.09004 * 110.72067 * 204.22623 * 20 19 18 48 48 H 1.09007 * 110.87224 * 81.01667 * 20 19 18 49 49 H 1.09005 * 110.30621 * 263.03984 * 21 20 19 50 50 H 1.09000 * 110.31006 * 140.87414 * 21 20 19 51 51 H 0.97004 * 119.99652 * 0.02562 * 25 24 22 52 52 H 0.96999 * 120.00415 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4796 6 1 0.9164 0.8670 -2.3805 7 6 1.8711 -0.4816 -3.7319 8 7 2.6272 -1.5509 -3.8526 9 14 1.2478 0.3985 -5.2572 10 1 2.2252 1.4410 -5.6613 11 1 1.0836 -0.5807 -6.3614 12 1 -0.0608 1.0351 -4.9613 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0219 -0.6946 3.6703 16 6 1.4933 0.0540 4.8955 17 6 1.9839 -0.6398 6.1679 18 7 1.4760 0.0785 7.3443 19 6 0.0030 0.2534 7.2661 20 6 -0.4012 0.5174 8.7384 21 6 0.5407 -0.4195 9.5288 22 6 1.7256 -0.6898 8.5832 23 1 1.7831 -1.7541 8.3548 24 6 3.0098 -0.2327 9.2256 25 7 3.4250 -0.7962 10.3774 26 8 3.6697 0.6424 8.7063 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2492 35 1 2.8615 -1.8823 -4.7337 36 1 3.1300 -0.7216 1.2490 37 1 1.6766 -1.7489 1.2493 38 1 1.8198 0.9436 2.4402 39 1 3.1117 -0.6940 3.6869 40 1 1.6588 -1.7221 3.6873 41 1 0.4035 0.0538 4.8792 42 1 1.8568 1.0815 4.8783 43 1 3.0737 -0.6400 6.1845 44 1 1.6201 -1.6671 6.1849 45 1 -0.4728 -0.6536 6.8932 46 1 -0.2528 1.1068 6.6380 47 1 -1.4439 0.2475 8.9064 48 1 -0.2254 1.5587 9.0087 49 1 0.0304 -1.3516 9.7719 50 1 0.8869 0.0715 10.4383 51 1 2.8973 -1.4963 10.7926 52 1 4.2518 -0.5022 10.7907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344204920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:56 Heat of formation + Delta-G solvation = -54.957302 kcal Electronic energy + Delta-G solvation = -26018.212175 eV Core-core repulsion = 22437.493783 eV Total energy + Delta-G solvation = -3580.718391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.49731 -38.32910 -37.63975 -35.32848 -34.05333 -33.07328 -32.04500 -30.03852 -29.33616 -26.91866 -26.28216 -25.65316 -24.17959 -23.00579 -22.25161 -21.82113 -20.58543 -20.24491 -17.98840 -17.73500 -17.02623 -16.49920 -16.20868 -15.81061 -15.51843 -14.85465 -14.64378 -14.58603 -14.24527 -14.06096 -13.80061 -13.51399 -13.38159 -12.95486 -12.58578 -12.52063 -12.25330 -12.02362 -11.95949 -11.67059 -11.62084 -11.28783 -11.24167 -11.15513 -10.98557 -10.87672 -10.74927 -10.64976 -10.43967 -10.20889 -10.13492 -10.07242 -10.00211 -9.63433 -8.97173 -8.78913 -8.70661 -8.28492 -8.02679 -5.93031 -3.92938 2.36536 2.95732 3.35689 3.42083 3.45246 3.70275 4.09826 4.21539 4.40510 4.48235 4.56346 4.68704 4.80598 4.91382 5.07410 5.14913 5.19033 5.26485 5.29431 5.38602 5.42651 5.47209 5.60208 5.67071 5.74503 5.75533 5.77631 5.85713 6.03144 6.13689 6.16979 6.32115 6.38921 6.39473 6.51089 6.56821 6.70119 6.71341 6.84540 6.87718 7.00703 7.25816 7.28449 7.30802 7.46478 7.72596 7.76366 7.90179 7.99899 8.07530 8.52234 9.12486 9.69577 11.18629 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.001943 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.878585 B =14407.406228 C =14779.776110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.687 5.687 15 C 0.060 3.940 16 C -0.114 4.114 17 C 0.051 3.949 18 N -0.493 5.493 19 C 0.035 3.965 20 C -0.124 4.124 21 C -0.122 4.122 22 C 0.045 3.955 23 H 0.079 0.921 24 C 0.522 3.478 25 N -0.862 5.862 26 O -0.516 6.516 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.258 0.742 36 H 0.022 0.978 37 H 0.064 0.936 38 H 0.338 0.662 39 H 0.025 0.975 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.399 0.601 52 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -0.514 31.256 31.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.187 4.187 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.319 5.319 15 C -0.071 4.071 16 C -0.152 4.152 17 C -0.077 4.077 18 N -0.217 5.217 19 C -0.092 4.092 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.068 4.068 23 H 0.097 0.903 24 C 0.305 3.695 25 N -0.427 5.427 26 O -0.389 6.389 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.157 0.843 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.226 0.774 52 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.015 0.138 30.613 30.876 hybrid contribution 0.536 -0.570 -0.586 0.977 sum -3.479 -0.432 30.027 30.231 Atomic orbital electron populations 1.21596 0.95044 1.00500 1.00152 1.20628 0.95834 0.95023 0.94416 1.21772 0.99717 0.96757 1.00429 1.19125 0.95889 0.95180 0.90218 1.21247 1.30646 1.11893 0.90613 0.92277 1.25031 0.95472 0.95143 0.99075 1.69970 1.37391 1.23193 1.23236 0.86654 0.79234 0.79389 0.83078 1.20842 1.21409 1.19916 1.22096 0.96310 0.98034 0.89399 1.60570 1.63647 1.06451 1.01198 1.21864 0.96905 0.98457 0.89840 1.21585 1.01562 1.00103 0.91996 1.22304 1.00881 0.94867 0.89680 1.64388 1.12551 1.44499 1.00242 1.23288 0.87269 1.01577 0.97081 1.22504 0.98858 1.00359 0.94495 1.22408 0.94758 1.00765 0.98150 1.22349 0.93762 0.97614 0.93043 0.90350 1.20479 0.86711 0.81745 0.80520 1.43887 1.28856 1.43204 1.26765 1.90767 1.56021 1.29748 1.62351 0.93887 0.92716 0.94253 0.94109 0.91741 0.94735 0.96936 0.96716 0.93205 0.95937 0.91723 0.84264 0.95664 0.91523 0.90956 0.91116 0.90451 0.94640 0.93188 0.89080 0.90522 0.90444 0.90360 0.90567 0.77356 0.76810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 2 C -0.06 -1.20 0.60 -154.51 -0.09 -1.29 16 3 C -0.13 -2.48 7.89 37.16 0.29 -2.19 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -14.05 7.65 -34.44 -0.26 -14.31 16 6 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.07 1.26 4.65 -3.83 -0.02 1.24 16 14 N -0.69 -10.34 5.71 -113.78 -0.65 -10.99 16 15 C 0.06 0.76 5.69 -3.82 -0.02 0.74 16 16 C -0.11 -1.26 5.14 -26.73 -0.14 -1.40 16 17 C 0.05 0.52 5.03 -3.82 -0.02 0.50 16 18 N -0.49 -4.87 4.55 -223.94 -1.02 -5.89 16 19 C 0.04 0.28 5.10 -1.89 -0.01 0.27 16 20 C -0.12 -0.76 7.06 -24.87 -0.18 -0.93 16 21 C -0.12 -0.63 6.48 -25.38 -0.16 -0.80 16 22 C 0.04 0.34 2.87 -67.80 -0.19 0.15 16 23 H 0.08 0.49 7.57 -51.93 -0.39 0.10 16 24 C 0.52 4.82 7.26 -10.99 -0.08 4.74 16 25 N -0.86 -4.11 8.75 31.22 0.27 -3.84 16 26 O -0.52 -7.44 17.31 5.55 0.10 -7.34 16 27 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 28 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 32 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.34 4.98 6.77 -39.29 -0.27 4.71 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.79 6.79 -51.93 -0.35 0.43 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.04 0.33 7.81 -51.93 -0.41 -0.08 16 45 H 0.05 0.37 8.00 -51.93 -0.42 -0.04 16 46 H 0.09 0.77 7.67 -51.93 -0.40 0.37 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.08 0.36 7.64 -51.93 -0.40 -0.03 16 51 H 0.40 0.64 8.80 -40.82 -0.36 0.28 16 52 H 0.40 1.67 8.93 -40.82 -0.36 1.31 16 LS Contribution 400.65 15.07 6.04 6.04 Total: -1.00 -33.74 400.65 -10.04 -43.78 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -9.70 Total: 0.94 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.79 Total: -13.10 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.66 Total: -47.17 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.10 Total: -7.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.74 -10.04 -43.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344204920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.177 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds