Wall clock time and date at job start Tue Mar 31 2020 10:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 C 1.53000 * 109.46920 * 239.99989 * 2 1 3 5 5 C 1.50697 * 109.46895 * 59.99942 * 4 2 1 6 6 H 1.07998 * 120.00300 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99611 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00216 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46994 * 89.99892 * 9 7 5 11 11 H 1.48493 * 109.47307 * 210.00260 * 9 7 5 12 12 H 1.48506 * 109.47010 * 330.00544 * 9 7 5 13 13 C 1.52998 * 109.47111 * 119.99973 * 2 1 3 14 14 N 1.46897 * 109.47222 * 300.00097 * 13 2 1 15 15 C 1.46905 * 111.00064 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.46837 * 179.97438 * 15 14 13 17 17 C 1.53007 * 109.46777 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.47221 * 180.02562 * 17 16 15 19 19 C 1.48539 * 110.99934 * 52.60222 * 18 17 16 20 20 C 1.54940 * 103.22513 * 159.72167 * 19 18 17 21 21 C 1.54590 * 102.92203 * 322.58801 * 20 19 18 22 22 C 1.47900 * 111.00131 * 169.99927 * 18 17 16 23 23 H 1.09002 * 109.91794 * 333.50785 * 22 18 17 24 24 C 1.50697 * 110.08124 * 94.71022 * 22 18 17 25 25 N 1.34773 * 120.00311 * 179.49053 * 24 22 18 26 26 O 1.21284 * 119.99960 * 359.49660 * 24 22 18 27 27 H 1.09005 * 109.47060 * 300.00086 * 1 2 3 28 28 H 1.08992 * 109.47371 * 59.99680 * 1 2 3 29 29 H 1.08996 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47100 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47071 * 300.00450 * 3 2 1 32 32 H 1.08999 * 109.46862 * 60.00146 * 3 2 1 33 33 H 1.08994 * 109.47110 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46869 * 300.00271 * 4 2 1 35 35 H 0.97000 * 120.00066 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.46911 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.47019 * 59.99520 * 13 2 1 38 38 H 1.00903 * 111.00235 * 303.95190 * 14 13 2 39 39 H 1.08992 * 109.47110 * 59.99624 * 15 14 13 40 40 H 1.08998 * 109.46664 * 299.99706 * 15 14 13 41 41 H 1.09000 * 109.47646 * 60.00250 * 16 15 14 42 42 H 1.08998 * 109.47395 * 299.99432 * 16 15 14 43 43 H 1.08992 * 109.47019 * 59.99891 * 17 16 15 44 44 H 1.08998 * 109.46816 * 299.99936 * 17 16 15 45 45 H 1.08998 * 110.66260 * 41.28731 * 19 18 17 46 46 H 1.09004 * 110.80689 * 278.22376 * 19 18 17 47 47 H 1.09004 * 110.72067 * 204.22623 * 20 19 18 48 48 H 1.09007 * 110.87224 * 81.01667 * 20 19 18 49 49 H 1.09005 * 110.30621 * 263.03984 * 21 20 19 50 50 H 1.09000 * 110.31006 * 140.87414 * 21 20 19 51 51 H 0.97004 * 119.99652 * 0.02562 * 25 24 22 52 52 H 0.96999 * 120.00415 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4796 6 1 0.9164 0.8670 -2.3805 7 6 1.8711 -0.4816 -3.7319 8 7 2.6272 -1.5509 -3.8526 9 14 1.2478 0.3985 -5.2572 10 1 2.2252 1.4410 -5.6613 11 1 1.0836 -0.5807 -6.3614 12 1 -0.0608 1.0351 -4.9613 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0219 -0.6946 3.6703 16 6 1.4933 0.0540 4.8955 17 6 1.9839 -0.6398 6.1679 18 7 1.4760 0.0785 7.3443 19 6 0.0030 0.2534 7.2661 20 6 -0.4012 0.5174 8.7384 21 6 0.5407 -0.4195 9.5288 22 6 1.7256 -0.6898 8.5832 23 1 1.7831 -1.7541 8.3548 24 6 3.0098 -0.2327 9.2256 25 7 3.4250 -0.7962 10.3774 26 8 3.6697 0.6424 8.7063 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2492 35 1 2.8615 -1.8823 -4.7337 36 1 3.1300 -0.7216 1.2490 37 1 1.6766 -1.7489 1.2493 38 1 1.8198 0.9436 2.4402 39 1 3.1117 -0.6940 3.6869 40 1 1.6588 -1.7221 3.6873 41 1 0.4035 0.0538 4.8792 42 1 1.8568 1.0815 4.8783 43 1 3.0737 -0.6400 6.1845 44 1 1.6201 -1.6671 6.1849 45 1 -0.4728 -0.6536 6.8932 46 1 -0.2528 1.1068 6.6380 47 1 -1.4439 0.2475 8.9064 48 1 -0.2254 1.5587 9.0087 49 1 0.0304 -1.3516 9.7719 50 1 0.8869 0.0715 10.4383 51 1 2.8973 -1.4963 10.7926 52 1 4.2518 -0.5022 10.7907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344204920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:55 Heat of formation + Delta-G solvation = -80.612630 kcal Electronic energy + Delta-G solvation = -26019.324673 eV Core-core repulsion = 22437.493783 eV Total energy + Delta-G solvation = -3581.830890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13982 -39.34465 -38.87215 -36.54294 -34.86637 -34.46446 -33.49900 -30.84014 -30.09051 -28.88027 -27.89377 -26.95821 -25.43656 -24.16716 -23.32073 -22.81304 -21.33334 -20.84489 -19.46436 -18.49115 -18.33213 -17.64997 -17.23455 -16.85085 -16.59167 -16.18684 -15.70027 -15.60907 -15.43133 -15.29110 -14.82833 -14.56997 -14.40611 -14.09116 -14.05746 -13.86904 -13.59587 -13.32524 -12.99566 -12.74485 -12.72013 -12.61684 -12.42935 -12.30464 -12.23443 -12.16564 -12.03108 -12.01570 -11.85615 -11.71329 -11.62024 -11.36115 -10.86277 -10.85123 -10.72093 -10.59090 -10.50571 -9.36596 -9.30303 -8.13899 -6.20992 1.40963 1.41644 1.52485 1.70039 2.40548 2.43990 3.01948 3.19688 3.35812 3.63574 3.72873 3.95414 4.05039 4.11267 4.20455 4.22095 4.28102 4.29547 4.33681 4.41627 4.47327 4.62697 4.70629 4.73677 4.78679 4.81901 4.82991 4.89181 4.95979 5.02326 5.08341 5.13522 5.18871 5.20626 5.22527 5.27063 5.30747 5.51584 5.53724 5.58574 5.65884 5.82946 5.87172 5.92641 5.97389 6.01217 6.11749 6.37066 6.51395 6.55865 6.93987 7.43995 7.46115 8.98429 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.001943 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.878585 B =14407.406228 C =14779.776110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.123 4.123 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.067 0.933 7 C -0.007 4.007 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.262 1.262 13 C 0.082 3.918 14 N -0.681 5.681 15 C 0.062 3.938 16 C -0.101 4.101 17 C 0.058 3.942 18 N -0.519 5.519 19 C 0.033 3.967 20 C -0.123 4.123 21 C -0.115 4.115 22 C 0.042 3.958 23 H 0.096 0.904 24 C 0.517 3.483 25 N -0.839 5.839 26 O -0.579 6.579 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.067 0.933 33 H -0.018 1.018 34 H -0.015 1.015 35 H 0.259 0.741 36 H 0.014 0.986 37 H 0.058 0.942 38 H 0.343 0.657 39 H 0.021 0.979 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.064 0.936 49 H 0.107 0.893 50 H 0.080 0.920 51 H 0.417 0.583 52 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -0.273 33.143 33.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.056 4.056 3 C -0.181 4.181 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.204 4.204 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.186 1.186 13 C -0.047 4.047 14 N -0.313 5.313 15 C -0.068 4.068 16 C -0.139 4.139 17 C -0.070 4.070 18 N -0.243 5.243 19 C -0.094 4.094 20 C -0.161 4.161 21 C -0.153 4.153 22 C -0.070 4.070 23 H 0.114 0.886 24 C 0.302 3.698 25 N -0.405 5.405 26 O -0.457 6.457 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.000 1.000 34 H 0.003 0.997 35 H 0.068 0.932 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.162 0.838 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.115 0.885 48 H 0.083 0.917 49 H 0.125 0.875 50 H 0.099 0.901 51 H 0.248 0.752 52 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.830 0.354 32.565 33.085 hybrid contribution 1.124 -0.691 -1.080 1.705 sum -4.706 -0.337 31.485 31.837 Atomic orbital electron populations 1.21497 0.94115 1.00161 1.00574 1.20502 0.96458 0.95526 0.93133 1.21695 0.99359 0.95752 1.01256 1.19010 0.93870 0.94156 0.92764 1.21621 1.30194 1.11945 0.91419 0.91543 1.25960 0.95772 0.95954 1.02677 1.70115 1.38891 1.24912 1.24020 0.85541 0.79100 0.78176 0.78809 1.20138 1.21221 1.18638 1.21812 0.95635 0.97605 0.89656 1.60525 1.63393 1.06579 1.00844 1.21897 0.96724 0.98751 0.89403 1.21430 1.01670 0.99172 0.91599 1.22145 0.99685 0.95521 0.89687 1.64303 1.13806 1.45421 1.00776 1.23315 0.86243 1.01510 0.98320 1.22510 1.00259 0.99989 0.93296 1.22445 0.93536 1.01943 0.97376 1.22465 0.93837 0.98090 0.92592 0.88614 1.20912 0.86891 0.81006 0.81041 1.43710 1.28862 1.42600 1.25295 1.90739 1.57913 1.32730 1.64311 0.91329 0.94232 0.94993 0.94673 0.93291 0.91431 0.99955 0.99680 0.93179 0.96821 0.92395 0.83808 0.96099 0.91095 0.90358 0.92278 0.92457 0.93301 0.92347 0.90165 0.88467 0.91725 0.87472 0.90125 0.75167 0.76294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 2 C -0.06 -2.28 0.60 -52.18 -0.03 -2.31 16 3 C -0.12 -4.63 7.89 71.98 0.57 -4.06 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.51 -28.94 7.65 25.60 0.20 -28.74 16 6 H 0.07 3.58 5.68 -2.91 -0.02 3.57 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 8 N -0.94 -58.18 13.29 21.45 0.28 -57.89 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 13 C 0.08 2.93 4.65 86.30 0.40 3.34 16 14 N -0.68 -19.58 5.71 -513.90 -2.94 -22.52 16 15 C 0.06 1.52 5.69 86.30 0.49 2.01 16 16 C -0.10 -2.11 5.14 30.60 0.16 -1.96 16 17 C 0.06 1.14 5.03 86.31 0.43 1.57 16 18 N -0.52 -9.73 4.55 -862.42 -3.92 -13.65 16 19 C 0.03 0.47 5.10 86.65 0.44 0.91 16 20 C -0.12 -1.22 7.06 31.80 0.22 -0.99 16 21 C -0.11 -0.84 6.48 31.47 0.20 -0.64 16 22 C 0.04 0.56 2.87 44.31 0.13 0.69 16 23 H 0.10 0.94 7.57 -2.39 -0.02 0.92 16 24 C 0.52 9.10 7.26 87.66 0.64 9.74 16 25 N -0.84 -6.58 8.75 -173.54 -1.52 -8.10 16 26 O -0.58 -17.04 17.31 -3.04 -0.05 -17.10 16 27 H 0.07 2.29 7.60 -2.38 -0.02 2.28 16 28 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.98 6.62 -2.39 -0.02 1.96 16 32 H 0.07 2.08 6.57 -2.39 -0.02 2.06 16 33 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.34 9.45 6.77 -89.69 -0.61 8.84 16 39 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.57 6.79 -2.39 -0.02 1.55 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.05 0.81 7.81 -2.39 -0.02 0.79 16 45 H 0.06 0.73 8.00 -2.39 -0.02 0.71 16 46 H 0.08 1.28 7.67 -2.38 -0.02 1.26 16 47 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 49 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 50 H 0.08 0.54 7.64 -2.39 -0.02 0.52 16 51 H 0.42 0.20 8.80 -92.71 -0.82 -0.62 16 52 H 0.41 2.85 8.93 -92.71 -0.83 2.02 16 Total: -1.00 -75.41 400.65 -2.45 -77.87 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -1.34 Total: 15.97 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 5.01 Total: -21.70 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -8.09 Total: -102.16 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.05 Total: -17.10 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -75.41 -2.45 -77.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344204920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.747 kcal (2) G-P(sol) polarization free energy of solvation -75.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds