Wall clock time and date at job start Tue Mar 31 2020 10:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.34777 * 120.00168 * 180.02562 * 5 4 2 7 7 O 1.21583 * 120.00158 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00133 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00523 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47609 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47429 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47451 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00235 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00072 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00149 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00097 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47201 * 90.00156 * 16 14 12 18 18 H 1.48500 * 109.47174 * 210.00074 * 16 14 12 19 19 H 1.48501 * 109.47144 * 329.99938 * 16 14 12 20 20 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 21 21 C 1.46851 * 110.99950 * 295.79034 * 20 2 1 22 22 C 1.53033 * 109.52619 * 185.83640 * 21 20 2 23 23 C 1.53121 * 109.27874 * 300.82453 * 22 21 20 24 24 C 1.53116 * 109.16092 * 57.65474 * 23 22 21 25 25 C 1.46843 * 111.00142 * 59.99870 * 20 2 1 26 26 H 1.09005 * 109.46454 * 294.18124 * 25 20 2 27 27 C 1.53006 * 109.45980 * 54.15766 * 25 20 2 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 32 32 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 33 33 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00223 * 359.97438 * 8 6 5 35 35 H 1.09007 * 109.46653 * 300.00248 * 9 8 6 36 36 H 1.09003 * 109.46918 * 59.99164 * 9 8 6 37 37 H 1.09011 * 109.46886 * 299.99322 * 10 9 8 38 38 H 1.08993 * 109.47809 * 59.99469 * 10 9 8 39 39 H 1.09004 * 109.47054 * 299.99641 * 11 10 9 40 40 H 1.09004 * 109.47440 * 59.99395 * 11 10 9 41 41 H 0.96992 * 120.00045 * 179.97438 * 15 14 12 42 42 H 1.08992 * 109.46261 * 305.85913 * 21 20 2 43 43 H 1.09006 * 109.45837 * 65.82408 * 21 20 2 44 44 H 1.08998 * 109.51054 * 180.87983 * 22 21 20 45 45 H 1.09009 * 109.53423 * 60.77983 * 22 21 20 46 46 H 1.08993 * 109.52275 * 297.74699 * 23 22 21 47 47 H 1.08998 * 109.57220 * 177.58771 * 23 22 21 48 48 H 1.09002 * 109.50462 * 182.40690 * 24 23 22 49 49 H 1.08994 * 109.50993 * 62.28202 * 24 23 22 50 50 H 1.08994 * 109.47023 * 59.99864 * 27 25 20 51 51 H 1.09005 * 109.46917 * 180.02562 * 27 25 20 52 52 H 1.09000 * 109.46929 * 299.99575 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5683 -1.8853 3.1420 8 7 5.5161 -1.5254 2.1372 9 6 6.2476 -2.1811 3.2240 10 6 7.7465 -2.1551 2.9185 11 6 8.5103 -2.8404 4.0533 12 6 9.9867 -2.8153 3.7520 13 1 10.3444 -2.3568 2.8420 14 6 10.8807 -3.3777 4.6382 15 7 12.1693 -3.3554 4.3756 16 14 10.2620 -4.1715 6.2119 17 1 9.9841 -5.6091 5.9651 18 1 11.2948 -4.0417 7.2710 19 1 9.0153 -3.4945 6.6508 20 7 2.0198 -0.6925 -1.1994 21 6 1.6328 -2.1090 -1.1841 22 6 2.2801 -2.8289 -2.3693 23 6 1.8217 -2.1693 -3.6730 24 6 2.1938 -0.6844 -3.6428 25 6 1.5489 -0.0267 -2.4206 26 1 0.4648 -0.1175 -2.4889 27 6 1.9347 1.4532 -2.3754 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7516 -0.1583 2.1369 32 1 1.6053 -1.7198 1.2952 33 1 3.9825 -0.4622 0.4320 34 1 5.9986 -1.1612 1.3785 35 1 6.0585 -1.6538 4.1591 36 1 5.9129 -3.2145 3.3156 37 1 7.9359 -2.6823 1.9833 38 1 8.0809 -1.1217 2.8272 39 1 8.3210 -2.3138 4.9887 40 1 8.1759 -3.8739 4.1442 41 1 12.7982 -3.7507 4.9992 42 1 1.9683 -2.5671 -0.2537 43 1 0.5483 -2.1900 -1.2582 44 1 1.9802 -3.8768 -2.3666 45 1 3.3650 -2.7607 -2.2889 46 1 0.7412 -2.2722 -3.7729 47 1 2.3132 -2.6509 -4.5183 48 1 1.8321 -0.2001 -4.5499 49 1 3.2772 -0.5818 -3.5820 50 1 3.0187 1.5442 -2.3067 51 1 1.5849 1.9477 -3.2816 52 1 1.4748 1.9222 -1.5055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351353893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:09 Heat of formation + Delta-G solvation = -50.358537 kcal Electronic energy + Delta-G solvation = -26518.825371 eV Core-core repulsion = 22938.306397 eV Total energy + Delta-G solvation = -3580.518974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48971 -39.46108 -36.17791 -35.27377 -33.75629 -33.22049 -32.72492 -31.31420 -30.23943 -27.53930 -27.38935 -25.95328 -24.61217 -22.74482 -22.04388 -21.06943 -20.76106 -20.14827 -19.35375 -17.92319 -16.92660 -16.80375 -16.25134 -15.59179 -15.44169 -15.01706 -14.75367 -14.69274 -14.36393 -14.26233 -13.88402 -13.75506 -13.62432 -13.07346 -12.97975 -12.74357 -12.65488 -12.46446 -12.39411 -12.05344 -12.01954 -11.88560 -11.76930 -11.59631 -11.07472 -11.04956 -11.00862 -10.85203 -10.58218 -10.48885 -10.20613 -9.95191 -9.77241 -9.63141 -9.18983 -9.10742 -8.64388 -8.53914 -8.51845 -6.03390 -4.01771 2.88352 3.34084 3.40844 3.41460 3.46467 3.48510 4.31343 4.34800 4.42250 4.47494 4.51582 4.58183 4.75722 4.79721 4.90508 4.93531 4.97942 5.11473 5.20794 5.22486 5.30806 5.30943 5.35386 5.43346 5.47808 5.52438 5.60405 5.62145 5.63931 5.66477 5.75915 5.76788 5.83033 5.84096 5.91742 6.07031 6.10639 6.46317 6.52890 6.53293 6.76305 6.77742 6.78501 6.90394 7.16341 7.28503 7.41501 7.79406 8.25125 8.53651 8.83020 9.00752 9.59116 11.09905 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.002282 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.368292 B =12264.315605 C =12797.124702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 H 0.095 0.905 4 C 0.147 3.853 5 N -0.739 5.739 6 C 0.699 3.301 7 O -0.601 6.601 8 N -0.742 5.742 9 C 0.134 3.866 10 C -0.112 4.112 11 C -0.011 4.011 12 C -0.521 4.521 13 H 0.072 0.928 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 N -0.523 5.523 21 C 0.049 3.951 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.111 4.111 25 C 0.080 3.920 26 H 0.042 0.958 27 C -0.151 4.151 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.402 0.598 34 H 0.395 0.605 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.014 0.986 41 H 0.263 0.737 42 H 0.082 0.918 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.058 0.942 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.560 8.393 -17.424 32.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.044 4.044 3 H 0.113 0.887 4 C 0.022 3.978 5 N -0.396 5.396 6 C 0.399 3.601 7 O -0.480 6.480 8 N -0.396 5.396 9 C 0.010 3.990 10 C -0.150 4.150 11 C -0.049 4.049 12 C -0.559 4.559 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.188 1.188 20 N -0.249 5.249 21 C -0.078 4.078 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.149 4.149 25 C -0.028 4.028 26 H 0.060 0.940 27 C -0.208 4.208 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.237 0.763 34 H 0.228 0.772 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.052 0.948 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.084 0.916 51 H 0.077 0.923 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.423 7.928 -16.450 32.119 hybrid contribution -0.632 -0.192 0.106 0.669 sum -27.055 7.736 -16.344 32.542 Atomic orbital electron populations 1.22379 0.96546 1.02692 1.02769 1.22055 0.93416 0.99203 0.89763 0.88691 1.21190 0.79878 1.00417 0.96297 1.44914 1.06980 1.63771 1.23922 1.16026 0.82018 0.79220 0.82835 1.90902 1.68080 1.54395 1.34584 1.45300 1.04839 1.63488 1.26005 1.21474 0.92058 0.96844 0.88574 1.21696 0.90830 1.01497 1.01027 1.19502 0.96090 0.95392 0.93925 1.21109 0.89194 1.37908 1.07652 0.91018 1.25031 0.94754 0.95622 0.98117 1.69915 1.01493 1.45811 1.37093 0.86775 0.78951 0.80136 0.83441 1.20263 1.21415 1.18843 1.62149 1.59507 1.02129 1.01069 1.22177 0.97625 0.88285 0.99736 1.21572 1.01616 0.98532 0.93723 1.21581 1.00638 0.95811 0.97883 1.21629 1.01675 0.95155 0.96442 1.21623 0.97085 0.94015 0.90034 0.93971 1.21944 1.02665 0.94506 1.01688 0.91872 0.92081 0.91558 0.91463 0.91849 0.76301 0.77176 0.92121 0.92135 0.92193 0.92167 0.96306 0.96744 0.92736 0.89986 0.94820 0.91693 0.90932 0.92568 0.91843 0.91785 0.90916 0.91551 0.92306 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 8.46 37.16 0.31 -0.77 16 2 C 0.06 0.44 2.05 -67.71 -0.14 0.30 16 3 H 0.10 0.62 6.21 -51.93 -0.32 0.30 16 4 C 0.15 1.41 4.51 -4.04 -0.02 1.39 16 5 N -0.74 -8.04 5.39 -65.23 -0.35 -8.39 16 6 C 0.70 10.62 8.57 -86.92 -0.74 9.88 16 7 O -0.60 -11.70 16.34 5.29 0.09 -11.61 16 8 N -0.74 -10.72 5.56 -65.23 -0.36 -11.08 16 9 C 0.13 2.32 5.67 -4.05 -0.02 2.30 16 10 C -0.11 -2.14 5.27 -26.74 -0.14 -2.29 16 11 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 12 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 13 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 16 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 19 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 20 N -0.52 -3.61 3.96 -218.76 -0.87 -4.47 16 21 C 0.05 0.38 4.67 -3.83 -0.02 0.36 16 22 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 23 C -0.12 -0.76 6.00 -26.61 -0.16 -0.92 16 24 C -0.11 -0.67 5.37 -26.65 -0.14 -0.82 16 25 C 0.08 0.49 1.87 -67.72 -0.13 0.36 16 26 H 0.04 0.27 6.63 -51.93 -0.34 -0.07 16 27 C -0.15 -0.81 8.76 37.16 0.33 -0.48 16 28 H 0.06 0.35 6.52 -51.93 -0.34 0.01 16 29 H 0.06 0.39 6.63 -51.93 -0.34 0.05 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 33 H 0.40 3.66 8.15 -40.82 -0.33 3.33 16 34 H 0.39 4.66 8.49 -40.82 -0.35 4.31 16 35 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.08 0.76 6.01 -51.93 -0.31 0.45 16 43 H 0.03 0.25 6.71 -51.93 -0.35 -0.10 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 52 H 0.06 0.30 6.28 -51.93 -0.33 -0.02 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -32.88 393.11 -10.67 -43.55 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -9.63 Total: 1.40 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.58 Total: -5.40 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.81 Total: -51.17 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.88 -10.67 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351353893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.808 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds