Wall clock time and date at job start Tue Mar 31 2020 10:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.34777 * 120.00168 * 180.02562 * 5 4 2 7 7 O 1.21583 * 120.00158 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00133 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00523 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47609 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47429 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47451 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00235 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00072 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00149 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00097 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47201 * 90.00156 * 16 14 12 18 18 H 1.48500 * 109.47174 * 210.00074 * 16 14 12 19 19 H 1.48501 * 109.47144 * 329.99938 * 16 14 12 20 20 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 21 21 C 1.46851 * 110.99950 * 295.79034 * 20 2 1 22 22 C 1.53033 * 109.52619 * 185.83640 * 21 20 2 23 23 C 1.53121 * 109.27874 * 300.82453 * 22 21 20 24 24 C 1.53116 * 109.16092 * 57.65474 * 23 22 21 25 25 C 1.46843 * 111.00142 * 59.99870 * 20 2 1 26 26 H 1.09005 * 109.46454 * 294.18124 * 25 20 2 27 27 C 1.53006 * 109.45980 * 54.15766 * 25 20 2 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 32 32 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 33 33 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00223 * 359.97438 * 8 6 5 35 35 H 1.09007 * 109.46653 * 300.00248 * 9 8 6 36 36 H 1.09003 * 109.46918 * 59.99164 * 9 8 6 37 37 H 1.09011 * 109.46886 * 299.99322 * 10 9 8 38 38 H 1.08993 * 109.47809 * 59.99469 * 10 9 8 39 39 H 1.09004 * 109.47054 * 299.99641 * 11 10 9 40 40 H 1.09004 * 109.47440 * 59.99395 * 11 10 9 41 41 H 0.96992 * 120.00045 * 179.97438 * 15 14 12 42 42 H 1.08992 * 109.46261 * 305.85913 * 21 20 2 43 43 H 1.09006 * 109.45837 * 65.82408 * 21 20 2 44 44 H 1.08998 * 109.51054 * 180.87983 * 22 21 20 45 45 H 1.09009 * 109.53423 * 60.77983 * 22 21 20 46 46 H 1.08993 * 109.52275 * 297.74699 * 23 22 21 47 47 H 1.08998 * 109.57220 * 177.58771 * 23 22 21 48 48 H 1.09002 * 109.50462 * 182.40690 * 24 23 22 49 49 H 1.08994 * 109.50993 * 62.28202 * 24 23 22 50 50 H 1.08994 * 109.47023 * 59.99864 * 27 25 20 51 51 H 1.09005 * 109.46917 * 180.02562 * 27 25 20 52 52 H 1.09000 * 109.46929 * 299.99575 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5683 -1.8853 3.1420 8 7 5.5161 -1.5254 2.1372 9 6 6.2476 -2.1811 3.2240 10 6 7.7465 -2.1551 2.9185 11 6 8.5103 -2.8404 4.0533 12 6 9.9867 -2.8153 3.7520 13 1 10.3444 -2.3568 2.8420 14 6 10.8807 -3.3777 4.6382 15 7 12.1693 -3.3554 4.3756 16 14 10.2620 -4.1715 6.2119 17 1 9.9841 -5.6091 5.9651 18 1 11.2948 -4.0417 7.2710 19 1 9.0153 -3.4945 6.6508 20 7 2.0198 -0.6925 -1.1994 21 6 1.6328 -2.1090 -1.1841 22 6 2.2801 -2.8289 -2.3693 23 6 1.8217 -2.1693 -3.6730 24 6 2.1938 -0.6844 -3.6428 25 6 1.5489 -0.0267 -2.4206 26 1 0.4648 -0.1175 -2.4889 27 6 1.9347 1.4532 -2.3754 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7516 -0.1583 2.1369 32 1 1.6053 -1.7198 1.2952 33 1 3.9825 -0.4622 0.4320 34 1 5.9986 -1.1612 1.3785 35 1 6.0585 -1.6538 4.1591 36 1 5.9129 -3.2145 3.3156 37 1 7.9359 -2.6823 1.9833 38 1 8.0809 -1.1217 2.8272 39 1 8.3210 -2.3138 4.9887 40 1 8.1759 -3.8739 4.1442 41 1 12.7982 -3.7507 4.9992 42 1 1.9683 -2.5671 -0.2537 43 1 0.5483 -2.1900 -1.2582 44 1 1.9802 -3.8768 -2.3666 45 1 3.3650 -2.7607 -2.2889 46 1 0.7412 -2.2722 -3.7729 47 1 2.3132 -2.6509 -4.5183 48 1 1.8321 -0.2001 -4.5499 49 1 3.2772 -0.5818 -3.5820 50 1 3.0187 1.5442 -2.3067 51 1 1.5849 1.9477 -3.2816 52 1 1.4748 1.9222 -1.5055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351353893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:08 Heat of formation + Delta-G solvation = -73.036529 kcal Electronic energy + Delta-G solvation = -26519.808763 eV Core-core repulsion = 22938.306397 eV Total energy + Delta-G solvation = -3581.502366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27554 -40.45312 -37.22596 -36.48539 -35.11391 -34.56159 -33.47310 -32.98981 -30.86357 -29.05584 -27.91247 -27.00092 -25.20354 -24.40970 -22.62246 -22.21087 -21.72313 -21.57497 -19.92908 -19.15354 -18.80742 -17.55758 -17.37308 -16.71765 -16.37900 -16.16181 -15.76323 -15.59550 -15.35272 -15.29022 -15.05638 -14.78758 -14.66375 -14.40467 -13.83610 -13.73768 -13.59754 -13.51863 -13.27030 -12.98582 -12.84355 -12.71539 -12.67194 -12.54249 -12.47817 -12.18472 -11.90786 -11.76341 -11.63305 -11.57264 -11.55748 -11.31533 -11.24419 -11.14924 -10.99752 -10.74776 -10.30736 -9.66348 -9.18800 -8.28148 -6.31788 1.38013 1.39537 1.51719 1.79739 2.22293 2.37709 2.86546 3.07620 3.43397 3.71318 3.83715 3.97371 4.00076 4.13563 4.16874 4.24779 4.25474 4.35799 4.41957 4.45412 4.54087 4.59801 4.62119 4.69916 4.74263 4.76826 4.87642 4.92347 4.93079 4.95196 5.02008 5.06248 5.07377 5.10358 5.17516 5.24693 5.28612 5.32711 5.41451 5.44770 5.54106 5.56662 5.58468 5.60390 5.67136 6.10846 6.17813 6.24299 6.29194 6.76141 7.19431 7.32996 7.65923 8.88300 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.002282 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.368292 B =12264.315605 C =12797.124702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.074 3.926 3 H 0.105 0.895 4 C 0.147 3.853 5 N -0.719 5.719 6 C 0.697 3.303 7 O -0.644 6.644 8 N -0.734 5.734 9 C 0.148 3.852 10 C -0.098 4.098 11 C -0.012 4.012 12 C -0.529 4.529 13 H 0.038 0.962 14 C 0.004 3.996 15 N -0.951 5.951 16 Si 0.947 3.053 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.248 1.248 20 N -0.527 5.527 21 C 0.053 3.947 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.109 4.109 25 C 0.081 3.919 26 H 0.044 0.956 27 C -0.147 4.147 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.413 0.587 34 H 0.410 0.590 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.019 0.981 41 H 0.266 0.734 42 H 0.063 0.937 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.538 9.057 -17.925 34.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.035 4.035 3 H 0.123 0.877 4 C 0.022 3.978 5 N -0.376 5.376 6 C 0.396 3.604 7 O -0.527 6.527 8 N -0.389 5.389 9 C 0.023 3.977 10 C -0.136 4.136 11 C -0.050 4.050 12 C -0.567 4.567 13 H 0.056 0.944 14 C -0.192 4.192 15 N -0.592 5.592 16 Si 0.771 3.229 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.171 1.171 20 N -0.252 5.252 21 C -0.074 4.074 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.026 4.026 26 H 0.062 0.938 27 C -0.205 4.205 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.250 0.750 34 H 0.245 0.755 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.086 0.914 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -28.416 8.628 -17.015 34.225 hybrid contribution -0.001 -0.363 0.156 0.395 sum -28.416 8.265 -16.859 34.059 Atomic orbital electron populations 1.22334 0.95526 1.02542 1.03497 1.21975 0.94060 0.99025 0.88414 0.87723 1.21287 0.78735 1.00090 0.97644 1.44784 1.07557 1.62230 1.22986 1.16171 0.81975 0.79192 0.83024 1.90874 1.68921 1.56343 1.36528 1.45033 1.04764 1.63250 1.25861 1.21106 0.90858 0.96609 0.89087 1.21462 0.91520 1.01213 0.99427 1.19464 0.93590 0.96264 0.95675 1.21466 0.91880 1.37010 1.06390 0.94391 1.25981 0.94826 0.96429 1.02008 1.70059 1.02993 1.47356 1.38748 0.85702 0.78938 0.79462 0.78842 1.19263 1.21003 1.17138 1.62150 1.59736 1.01809 1.01535 1.22079 0.97732 0.88721 0.98898 1.21552 1.00765 0.98751 0.94298 1.21559 1.00846 0.95983 0.97240 1.21621 1.01144 0.95000 0.96953 1.21658 0.97136 0.94417 0.89420 0.93785 1.21919 1.02306 0.93882 1.02369 0.90917 0.92679 0.91039 0.92026 0.93041 0.74964 0.75461 0.92883 0.92918 0.91802 0.91735 0.96088 0.96243 0.92520 0.91895 0.94509 0.91667 0.92162 0.92174 0.91548 0.90637 0.91770 0.92129 0.91371 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.46 71.98 0.61 -1.18 16 2 C 0.07 0.88 2.05 44.92 0.09 0.97 16 3 H 0.10 1.11 6.21 -2.39 -0.01 1.09 16 4 C 0.15 2.68 4.51 86.38 0.39 3.07 16 5 N -0.72 -14.84 5.39 -478.55 -2.58 -17.42 16 6 C 0.70 20.55 8.57 179.06 1.53 22.08 16 7 O -0.64 -24.91 16.34 -3.98 -0.07 -24.97 16 8 N -0.73 -20.21 5.56 -478.54 -2.66 -22.88 16 9 C 0.15 4.94 5.67 86.38 0.49 5.43 16 10 C -0.10 -3.64 5.27 30.59 0.16 -3.48 16 11 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 12 C -0.53 -30.38 9.66 25.60 0.25 -30.13 16 13 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 14 C 0.00 0.25 5.47 84.65 0.46 0.72 16 15 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 16 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 19 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 20 N -0.53 -6.48 3.96 -846.01 -3.35 -9.82 16 21 C 0.05 0.77 4.67 86.32 0.40 1.18 16 22 C -0.12 -1.60 6.09 30.65 0.19 -1.41 16 23 C -0.12 -1.32 6.00 30.67 0.18 -1.13 16 24 C -0.11 -1.12 5.37 30.65 0.16 -0.96 16 25 C 0.08 0.82 1.87 44.94 0.08 0.91 16 26 H 0.04 0.45 6.63 -2.38 -0.02 0.44 16 27 C -0.15 -1.23 8.76 71.98 0.63 -0.60 16 28 H 0.07 0.61 6.52 -2.39 -0.02 0.60 16 29 H 0.05 0.63 6.63 -2.39 -0.02 0.61 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.09 6.51 -2.39 -0.02 1.08 16 33 H 0.41 6.81 8.15 -92.71 -0.76 6.06 16 34 H 0.41 8.91 8.49 -92.71 -0.79 8.13 16 35 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 40 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.06 1.16 6.01 -2.39 -0.01 1.14 16 43 H 0.04 0.51 6.71 -2.38 -0.02 0.49 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 52 H 0.06 0.47 6.28 -2.39 -0.01 0.46 16 Total: -1.00 -71.08 393.11 -1.41 -72.50 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -0.70 Total: 20.33 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.76 Total: -4.98 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -8.29 Total: -109.66 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.07 Total: -24.97 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -71.08 -1.41 -72.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351353893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.538 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds