Wall clock time and date at job start Tue Mar 31 2020 10:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 N 1.46500 * 109.47281 * 184.99967 * 4 2 1 6 6 C 1.34778 * 120.00390 * 180.02562 * 5 4 2 7 7 O 1.21588 * 119.99484 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00459 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00052 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47111 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47519 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47619 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00128 * 180.02562 * 12 11 10 15 15 N 1.31505 * 119.99947 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99599 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47552 * 59.99839 * 16 14 12 18 18 H 1.48504 * 109.46552 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47280 * 299.99278 * 16 14 12 20 20 N 1.46906 * 109.47112 * 119.99911 * 2 1 3 21 21 C 1.46853 * 110.99832 * 59.21387 * 20 2 1 22 22 C 1.53033 * 109.52262 * 174.16246 * 21 20 2 23 23 C 1.53112 * 109.27992 * 59.17361 * 22 21 20 24 24 C 1.53120 * 109.16707 * 302.34582 * 23 22 21 25 25 C 1.46844 * 110.99887 * 295.00264 * 20 2 1 26 26 H 1.08998 * 109.46010 * 65.83553 * 25 20 2 27 27 C 1.52995 * 109.46497 * 305.85192 * 25 20 2 28 28 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 29 29 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 31 31 H 1.08992 * 109.47477 * 305.00383 * 4 2 1 32 32 H 1.09001 * 109.46779 * 65.00097 * 4 2 1 33 33 H 0.97003 * 119.99936 * 0.02562 * 5 4 2 34 34 H 0.97003 * 119.99867 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47323 * 299.99942 * 9 8 6 36 36 H 1.09001 * 109.46777 * 60.00150 * 9 8 6 37 37 H 1.08997 * 109.47216 * 300.00524 * 10 9 8 38 38 H 1.09001 * 109.47099 * 59.99817 * 10 9 8 39 39 H 1.09004 * 109.47076 * 300.00735 * 11 10 9 40 40 H 1.09001 * 109.47042 * 59.99835 * 11 10 9 41 41 H 0.97004 * 120.00144 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.46125 * 294.17808 * 21 20 2 43 43 H 1.09003 * 109.46462 * 54.14202 * 21 20 2 44 44 H 1.09007 * 109.50330 * 299.23709 * 22 21 20 45 45 H 1.08999 * 109.53502 * 179.13924 * 22 21 20 46 46 H 1.09001 * 109.52454 * 182.44025 * 23 22 21 47 47 H 1.09005 * 109.52421 * 62.25399 * 23 22 21 48 48 H 1.08996 * 109.49890 * 297.71825 * 24 23 22 49 49 H 1.08994 * 109.50831 * 177.59288 * 24 23 22 50 50 H 1.09004 * 109.46689 * 59.99850 * 27 25 20 51 51 H 1.08998 * 109.47634 * 180.02562 * 27 25 20 52 52 H 1.09007 * 109.47215 * 300.00408 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1910 7 8 3.5686 -1.8845 -3.1422 8 7 5.5164 -1.5245 -2.1373 9 6 6.2480 -2.1793 -3.2247 10 6 7.7468 -2.1545 -2.9183 11 6 8.5108 -2.8389 -4.0535 12 6 9.9870 -2.8150 -3.7515 13 1 10.3446 -2.3571 -2.8411 14 6 10.8812 -3.3769 -4.6380 15 7 10.4458 -3.9340 -5.7468 16 14 12.7110 -3.3479 -4.2632 17 1 12.9670 -4.0684 -2.9902 18 1 13.4524 -4.0121 -5.3652 19 1 13.1680 -1.9407 -4.1361 20 7 2.0196 -0.6925 1.1995 21 6 1.5335 -2.0775 1.2428 22 6 2.1776 -2.8090 2.4227 23 6 1.8222 -2.0825 3.7228 24 6 2.2965 -0.6294 3.6326 25 6 1.6488 0.0389 2.4176 26 1 0.5648 0.0277 2.5320 27 6 2.1355 1.4855 2.3118 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7197 -1.2952 32 1 1.7517 -0.1583 -2.1369 33 1 3.9824 -0.4628 -0.4315 34 1 5.9988 -1.1603 -1.3786 35 1 5.9134 -3.2126 -3.3171 36 1 6.0590 -1.6512 -4.1593 37 1 8.0816 -1.1214 -2.8256 38 1 7.9354 -2.6828 -1.9837 39 1 8.1758 -3.8720 -4.1459 40 1 8.3222 -2.3110 -4.9884 41 1 11.0749 -4.3296 -6.3703 42 1 0.4500 -2.0785 1.3627 43 1 1.7964 -2.5840 0.3141 44 1 3.2603 -2.8204 2.2965 45 1 1.8053 -3.8325 2.4642 46 1 2.3144 -2.5749 4.5615 47 1 0.7422 -2.1048 3.8690 48 1 3.3809 -0.6066 3.5254 49 1 2.0083 -0.0956 4.5381 50 1 1.6735 1.9618 1.4470 51 1 1.8606 2.0284 3.2161 52 1 3.2194 1.4967 2.1970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351353896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:17 Heat of formation + Delta-G solvation = -53.970738 kcal Electronic energy + Delta-G solvation = -26454.094553 eV Core-core repulsion = 22873.418942 eV Total energy + Delta-G solvation = -3580.675611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43092 -39.39522 -36.11971 -35.16082 -33.67593 -33.21168 -32.76118 -31.07236 -30.16918 -27.41294 -27.16668 -25.78608 -24.59553 -22.91462 -22.05066 -21.02201 -20.67987 -20.21736 -19.35266 -17.82960 -16.87603 -16.56672 -16.04512 -15.53806 -15.35388 -14.96219 -14.71943 -14.62990 -14.43352 -14.21246 -13.96655 -13.74204 -13.56889 -13.05812 -12.95601 -12.70990 -12.43370 -12.37477 -12.23158 -12.03767 -11.93182 -11.74993 -11.64862 -11.51957 -11.04886 -11.03230 -10.85054 -10.65805 -10.58682 -10.56281 -10.46449 -9.98998 -9.79579 -9.38379 -9.09227 -9.03012 -8.62148 -8.44326 -8.33265 -5.98063 -4.00987 2.95911 3.34516 3.39074 3.41110 3.45166 3.54526 4.33893 4.36863 4.44153 4.47600 4.55954 4.61111 4.78013 4.82331 4.93088 4.95076 4.99152 5.12831 5.22091 5.25305 5.34256 5.37505 5.37817 5.45717 5.48956 5.54067 5.62394 5.66207 5.67012 5.77311 5.79781 5.84414 5.86960 5.89546 5.93112 6.08164 6.26307 6.58535 6.63793 6.69828 6.79523 6.80265 6.92105 7.09887 7.25752 7.68212 7.81942 8.01250 8.32990 8.42433 8.91272 9.05628 9.62801 11.13248 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.002224 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.888263 B =12589.523755 C =13235.215253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.063 3.937 3 H 0.096 0.904 4 C 0.149 3.851 5 N -0.739 5.739 6 C 0.699 3.301 7 O -0.600 6.600 8 N -0.742 5.742 9 C 0.136 3.864 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.523 5.523 21 C 0.050 3.950 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.111 4.111 25 C 0.081 3.919 26 H 0.042 0.958 27 C -0.151 4.151 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.393 0.607 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.035 0.965 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.057 0.943 51 H 0.058 0.942 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.379 9.702 20.433 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.046 4.046 3 H 0.114 0.886 4 C 0.024 3.976 5 N -0.396 5.396 6 C 0.398 3.602 7 O -0.479 6.479 8 N -0.396 5.396 9 C 0.013 3.987 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 N -0.248 5.248 21 C -0.077 4.077 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.149 4.149 25 C -0.027 4.027 26 H 0.059 0.941 27 C -0.208 4.208 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.236 0.764 34 H 0.226 0.774 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.077 0.923 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.356 9.154 19.341 30.946 hybrid contribution 0.543 0.299 0.882 1.078 sum -21.813 9.453 20.224 31.211 Atomic orbital electron populations 1.22370 0.96547 1.02737 1.02680 1.22079 0.93421 0.99195 0.89897 0.88647 1.21154 0.79929 1.00370 0.96151 1.44901 1.06944 1.63902 1.23842 1.16044 0.82065 0.79236 0.82834 1.90906 1.68070 1.54322 1.34589 1.45351 1.04805 1.63495 1.25998 1.21468 0.92038 0.96835 0.88380 1.21879 0.91239 1.01094 1.01574 1.19020 0.94126 0.95719 0.92483 1.21179 0.91751 1.37414 1.05694 0.92718 1.25029 0.98955 0.95391 0.95105 1.69956 1.34666 1.38258 1.10431 0.86646 0.85241 0.78197 0.77819 1.20267 1.21299 1.20262 1.62130 1.59509 1.01969 1.01227 1.22161 0.96995 0.88898 0.99669 1.21573 1.01862 0.98261 0.93769 1.21581 1.00615 0.95849 0.97853 1.21628 1.01456 0.95327 0.96480 1.21611 0.97455 0.93578 0.90099 0.94055 1.21952 1.02439 0.94764 1.01672 0.91555 0.91967 0.92041 0.91938 0.91508 0.76425 0.77368 0.92122 0.92110 0.92824 0.92813 0.96277 0.96280 0.92897 0.94723 0.90110 0.90943 0.91688 0.91866 0.92560 0.90925 0.91797 0.92369 0.92292 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 8.50 37.16 0.32 -0.81 16 2 C 0.06 0.44 2.12 -67.71 -0.14 0.30 16 3 H 0.10 0.64 5.92 -51.93 -0.31 0.34 16 4 C 0.15 1.49 4.69 -4.04 -0.02 1.47 16 5 N -0.74 -8.44 5.39 -65.23 -0.35 -8.79 16 6 C 0.70 11.13 8.57 -86.92 -0.74 10.38 16 7 O -0.60 -12.20 16.34 5.29 0.09 -12.11 16 8 N -0.74 -11.31 5.56 -65.22 -0.36 -11.67 16 9 C 0.14 2.52 5.67 -4.04 -0.02 2.50 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 12 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 13 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 16 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 N -0.52 -3.72 3.92 -218.76 -0.86 -4.57 16 21 C 0.05 0.39 4.63 -3.83 -0.02 0.37 16 22 C -0.12 -0.86 6.09 -26.66 -0.16 -1.02 16 23 C -0.12 -0.77 6.00 -26.61 -0.16 -0.93 16 24 C -0.11 -0.68 5.37 -26.65 -0.14 -0.83 16 25 C 0.08 0.50 2.00 -67.72 -0.14 0.37 16 26 H 0.04 0.27 6.73 -51.93 -0.35 -0.08 16 27 C -0.15 -0.83 8.78 37.15 0.33 -0.50 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 6.52 -51.93 -0.34 0.07 16 30 H 0.06 0.35 6.65 -51.93 -0.35 0.01 16 31 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 3.83 8.15 -40.82 -0.33 3.50 16 34 H 0.39 4.89 8.49 -40.82 -0.35 4.54 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.03 0.26 6.62 -51.93 -0.34 -0.08 16 43 H 0.08 0.76 6.14 -51.93 -0.32 0.44 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.31 6.22 -51.93 -0.32 -0.01 16 51 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 52 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -32.57 396.93 -11.04 -43.61 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -9.65 Total: 1.60 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.60 Total: -4.31 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.84 Total: -51.43 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.57 -11.04 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351353896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.363 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds