Wall clock time and date at job start Tue Mar 31 2020 10:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 N 1.46500 * 109.47281 * 184.99967 * 4 2 1 6 6 C 1.34778 * 120.00390 * 180.02562 * 5 4 2 7 7 O 1.21588 * 119.99484 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00459 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00052 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47111 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47519 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47619 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00128 * 180.02562 * 12 11 10 15 15 N 1.31505 * 119.99947 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99599 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47552 * 59.99839 * 16 14 12 18 18 H 1.48504 * 109.46552 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47280 * 299.99278 * 16 14 12 20 20 N 1.46906 * 109.47112 * 119.99911 * 2 1 3 21 21 C 1.46853 * 110.99832 * 59.21387 * 20 2 1 22 22 C 1.53033 * 109.52262 * 174.16246 * 21 20 2 23 23 C 1.53112 * 109.27992 * 59.17361 * 22 21 20 24 24 C 1.53120 * 109.16707 * 302.34582 * 23 22 21 25 25 C 1.46844 * 110.99887 * 295.00264 * 20 2 1 26 26 H 1.08998 * 109.46010 * 65.83553 * 25 20 2 27 27 C 1.52995 * 109.46497 * 305.85192 * 25 20 2 28 28 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 29 29 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 31 31 H 1.08992 * 109.47477 * 305.00383 * 4 2 1 32 32 H 1.09001 * 109.46779 * 65.00097 * 4 2 1 33 33 H 0.97003 * 119.99936 * 0.02562 * 5 4 2 34 34 H 0.97003 * 119.99867 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47323 * 299.99942 * 9 8 6 36 36 H 1.09001 * 109.46777 * 60.00150 * 9 8 6 37 37 H 1.08997 * 109.47216 * 300.00524 * 10 9 8 38 38 H 1.09001 * 109.47099 * 59.99817 * 10 9 8 39 39 H 1.09004 * 109.47076 * 300.00735 * 11 10 9 40 40 H 1.09001 * 109.47042 * 59.99835 * 11 10 9 41 41 H 0.97004 * 120.00144 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.46125 * 294.17808 * 21 20 2 43 43 H 1.09003 * 109.46462 * 54.14202 * 21 20 2 44 44 H 1.09007 * 109.50330 * 299.23709 * 22 21 20 45 45 H 1.08999 * 109.53502 * 179.13924 * 22 21 20 46 46 H 1.09001 * 109.52454 * 182.44025 * 23 22 21 47 47 H 1.09005 * 109.52421 * 62.25399 * 23 22 21 48 48 H 1.08996 * 109.49890 * 297.71825 * 24 23 22 49 49 H 1.08994 * 109.50831 * 177.59288 * 24 23 22 50 50 H 1.09004 * 109.46689 * 59.99850 * 27 25 20 51 51 H 1.08998 * 109.47634 * 180.02562 * 27 25 20 52 52 H 1.09007 * 109.47215 * 300.00408 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1910 7 8 3.5686 -1.8845 -3.1422 8 7 5.5164 -1.5245 -2.1373 9 6 6.2480 -2.1793 -3.2247 10 6 7.7468 -2.1545 -2.9183 11 6 8.5108 -2.8389 -4.0535 12 6 9.9870 -2.8150 -3.7515 13 1 10.3446 -2.3571 -2.8411 14 6 10.8812 -3.3769 -4.6380 15 7 10.4458 -3.9340 -5.7468 16 14 12.7110 -3.3479 -4.2632 17 1 12.9670 -4.0684 -2.9902 18 1 13.4524 -4.0121 -5.3652 19 1 13.1680 -1.9407 -4.1361 20 7 2.0196 -0.6925 1.1995 21 6 1.5335 -2.0775 1.2428 22 6 2.1776 -2.8090 2.4227 23 6 1.8222 -2.0825 3.7228 24 6 2.2965 -0.6294 3.6326 25 6 1.6488 0.0389 2.4176 26 1 0.5648 0.0277 2.5320 27 6 2.1355 1.4855 2.3118 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7197 -1.2952 32 1 1.7517 -0.1583 -2.1369 33 1 3.9824 -0.4628 -0.4315 34 1 5.9988 -1.1603 -1.3786 35 1 5.9134 -3.2126 -3.3171 36 1 6.0590 -1.6512 -4.1593 37 1 8.0816 -1.1214 -2.8256 38 1 7.9354 -2.6828 -1.9837 39 1 8.1758 -3.8720 -4.1459 40 1 8.3222 -2.3110 -4.9884 41 1 11.0749 -4.3296 -6.3703 42 1 0.4500 -2.0785 1.3627 43 1 1.7964 -2.5840 0.3141 44 1 3.2603 -2.8204 2.2965 45 1 1.8053 -3.8325 2.4642 46 1 2.3144 -2.5749 4.5615 47 1 0.7422 -2.1048 3.8690 48 1 3.3809 -0.6066 3.5254 49 1 2.0083 -0.0956 4.5381 50 1 1.6735 1.9618 1.4470 51 1 1.8606 2.0284 3.2161 52 1 3.2194 1.4967 2.1970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351353896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:16 Heat of formation + Delta-G solvation = -75.862320 kcal Electronic energy + Delta-G solvation = -26455.043843 eV Core-core repulsion = 22873.418942 eV Total energy + Delta-G solvation = -3581.624901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25331 -40.45184 -37.20097 -36.47819 -35.15626 -34.53630 -33.44857 -32.78237 -30.83112 -28.74122 -27.89486 -26.98337 -25.23305 -24.68469 -22.62945 -22.26790 -21.74647 -21.58910 -19.94011 -19.04993 -18.50826 -17.53393 -17.33809 -16.70699 -16.51044 -16.18749 -15.74669 -15.56638 -15.37998 -15.30967 -15.08150 -14.68548 -14.39442 -14.24293 -13.79140 -13.70957 -13.53803 -13.51789 -13.26225 -12.96439 -12.83113 -12.70237 -12.53296 -12.53128 -12.51985 -12.37484 -12.17692 -11.64261 -11.62485 -11.60574 -11.55541 -11.28641 -11.15703 -11.11579 -10.98244 -10.53210 -10.31453 -9.66465 -9.18572 -8.17681 -6.29280 1.42566 1.45984 1.53715 1.79338 2.22049 2.43524 2.86502 3.15836 3.43861 3.72760 3.83826 3.97927 3.99947 4.16561 4.20714 4.25810 4.26209 4.36185 4.42556 4.45805 4.58937 4.60211 4.62167 4.70550 4.75009 4.78195 4.87635 4.92912 4.98460 5.02286 5.02786 5.07223 5.11159 5.18374 5.19125 5.25116 5.29081 5.32749 5.41839 5.49707 5.54739 5.57542 5.61131 5.73235 5.86033 6.10937 6.18092 6.24704 6.25154 6.87845 7.20916 7.40097 7.66387 8.94362 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.002224 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.888263 B =12589.523755 C =13235.215253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 H 0.107 0.893 4 C 0.148 3.852 5 N -0.717 5.717 6 C 0.695 3.305 7 O -0.646 6.646 8 N -0.731 5.731 9 C 0.151 3.849 10 C -0.099 4.099 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.265 1.265 20 N -0.527 5.527 21 C 0.054 3.946 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.109 4.109 25 C 0.082 3.918 26 H 0.044 0.956 27 C -0.148 4.148 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.414 0.586 34 H 0.411 0.589 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.067 0.933 39 H -0.009 1.009 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.060 0.940 51 H 0.068 0.932 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.174 11.292 22.969 33.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.036 4.036 3 H 0.124 0.876 4 C 0.023 3.977 5 N -0.373 5.373 6 C 0.395 3.605 7 O -0.529 6.529 8 N -0.387 5.387 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.014 4.014 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.190 1.190 20 N -0.253 5.253 21 C -0.074 4.074 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.026 4.026 26 H 0.061 0.939 27 C -0.205 4.205 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.251 0.749 34 H 0.247 0.753 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.079 0.921 51 H 0.087 0.913 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.159 10.786 21.954 33.005 hybrid contribution 0.411 -0.206 0.100 0.471 sum -21.748 10.580 22.054 32.730 Atomic orbital electron populations 1.22324 0.95507 1.02593 1.03427 1.21990 0.94076 0.99034 0.88476 0.87554 1.21268 0.78705 1.00027 0.97654 1.44748 1.07544 1.62236 1.22819 1.16207 0.82016 0.79211 0.83054 1.90878 1.68972 1.56357 1.36689 1.45005 1.04721 1.63212 1.25722 1.21039 0.91436 0.96037 0.88861 1.21577 0.91257 1.01269 0.99626 1.18935 0.94464 0.94403 0.93563 1.21656 0.92894 1.37257 1.06128 0.91503 1.26038 1.04450 0.94864 0.94812 1.70109 1.36541 1.39290 1.11641 0.85460 0.78639 0.78797 0.77891 1.19016 1.21179 1.18970 1.62123 1.59673 1.01750 1.01709 1.22073 0.97268 0.89240 0.98824 1.21553 1.00925 0.98556 0.94342 1.21559 1.00899 0.95963 0.97173 1.21621 1.00892 0.95217 0.96963 1.21651 0.97592 0.93913 0.89456 0.93851 1.21930 1.02066 0.94181 1.02346 0.91085 0.92577 0.90990 0.93244 0.92129 0.74925 0.75333 0.93791 0.93650 0.91359 0.91457 0.99027 0.98980 0.92816 0.94288 0.92123 0.92239 0.91620 0.91517 0.92138 0.91743 0.90593 0.92068 0.91309 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.50 71.98 0.61 -1.29 16 2 C 0.07 0.92 2.12 44.91 0.10 1.01 16 3 H 0.11 1.17 5.92 -2.39 -0.01 1.16 16 4 C 0.15 2.88 4.69 86.38 0.41 3.29 16 5 N -0.72 -15.75 5.39 -478.55 -2.58 -18.33 16 6 C 0.70 21.99 8.57 179.06 1.53 23.53 16 7 O -0.65 -26.84 16.34 -3.99 -0.07 -26.90 16 8 N -0.73 -21.70 5.56 -478.53 -2.66 -24.36 16 9 C 0.15 5.65 5.67 86.38 0.49 6.14 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.02 1.28 4.97 29.84 0.15 1.43 16 12 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 13 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 14 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 15 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 16 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 N -0.53 -6.70 3.92 -846.01 -3.32 -10.01 16 21 C 0.05 0.79 4.63 86.32 0.40 1.19 16 22 C -0.12 -1.62 6.09 30.64 0.19 -1.44 16 23 C -0.12 -1.31 6.00 30.67 0.18 -1.13 16 24 C -0.11 -1.12 5.37 30.65 0.16 -0.95 16 25 C 0.08 0.84 2.00 44.94 0.09 0.93 16 26 H 0.04 0.45 6.73 -2.39 -0.02 0.44 16 27 C -0.15 -1.25 8.78 71.98 0.63 -0.62 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.68 6.52 -2.38 -0.02 0.66 16 30 H 0.07 0.64 6.65 -2.39 -0.02 0.63 16 31 H 0.05 1.12 6.56 -2.39 -0.02 1.10 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.41 7.15 8.15 -92.71 -0.76 6.40 16 34 H 0.41 9.37 8.49 -92.71 -0.79 8.59 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 42 H 0.04 0.54 6.62 -2.39 -0.02 0.53 16 43 H 0.06 1.15 6.14 -2.39 -0.01 1.13 16 44 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 50 H 0.06 0.49 6.22 -2.38 -0.01 0.47 16 51 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -71.27 396.93 -1.16 -72.44 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.65 Total: 20.36 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 5.80 Total: -1.81 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -8.27 Total: -110.26 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.07 Total: -26.90 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -71.27 -1.16 -72.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351353896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.425 kcal (2) G-P(sol) polarization free energy of solvation -71.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds