Wall clock time and date at job start Tue Mar 31 2020 10:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47073 * 2 1 4 4 H 1.08998 * 109.47048 * 54.99854 * 3 2 1 5 5 C 1.52994 * 109.47523 * 175.00189 * 3 2 1 6 6 N 1.46500 * 109.47145 * 295.00195 * 3 2 1 7 7 C 1.34783 * 120.00115 * 154.99687 * 6 3 2 8 8 O 1.21276 * 119.99911 * 359.97438 * 7 6 3 9 9 C 1.50699 * 120.00029 * 179.97438 * 7 6 3 10 10 N 1.46899 * 109.47125 * 180.02562 * 9 7 6 11 11 C 1.46948 * 111.00367 * 170.00194 * 10 9 7 12 12 C 1.53048 * 109.36994 * 183.19148 * 11 10 9 13 13 N 1.46962 * 109.35835 * 301.59713 * 12 11 10 14 14 C 1.46899 * 110.99727 * 183.18828 * 13 12 11 15 15 H 1.09001 * 109.47354 * 55.00102 * 14 13 12 16 16 C 1.53006 * 109.47163 * 295.00082 * 14 13 12 17 17 C 1.52997 * 109.47254 * 174.99970 * 14 13 12 18 18 C 1.50696 * 109.47268 * 294.99640 * 17 14 13 19 19 H 1.08004 * 119.99945 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00438 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99387 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00351 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47234 * 90.00117 * 22 20 18 24 24 H 1.48497 * 109.47345 * 210.00260 * 22 20 18 25 25 H 1.48502 * 109.47091 * 330.00344 * 22 20 18 26 26 C 1.46948 * 110.88294 * 59.32018 * 13 12 11 27 27 C 1.46962 * 110.99727 * 293.80087 * 10 9 7 28 28 H 1.09008 * 109.46827 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47046 * 299.99690 * 1 2 3 30 30 H 1.09001 * 109.47197 * 59.99980 * 1 2 3 31 31 H 1.09000 * 109.47088 * 240.00817 * 2 1 3 32 32 H 1.08993 * 109.47471 * 119.99939 * 2 1 3 33 33 H 1.08998 * 109.47232 * 59.99778 * 5 3 2 34 34 H 1.08996 * 109.47692 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47212 * 300.00252 * 5 3 2 36 36 H 0.97005 * 120.00234 * 335.00400 * 6 3 2 37 37 H 1.09008 * 109.46874 * 60.00098 * 9 7 6 38 38 H 1.08996 * 109.47071 * 300.00188 * 9 7 6 39 39 H 1.09003 * 109.49245 * 63.21574 * 11 10 9 40 40 H 1.08998 * 109.48890 * 303.15938 * 11 10 9 41 41 H 1.09000 * 109.49072 * 181.63580 * 12 11 10 42 42 H 1.08993 * 109.50501 * 61.56979 * 12 11 10 43 43 H 1.09000 * 109.47050 * 59.99970 * 16 14 13 44 44 H 1.09001 * 109.46801 * 180.02562 * 16 14 13 45 45 H 1.09001 * 109.46998 * 299.99678 * 16 14 13 46 46 H 1.08998 * 109.46934 * 54.99896 * 17 14 13 47 47 H 1.09006 * 109.47500 * 174.99769 * 17 14 13 48 48 H 0.97002 * 119.99896 * 179.97438 * 21 20 18 49 49 H 1.09004 * 109.49218 * 60.64290 * 26 13 12 50 50 H 1.08998 * 109.49241 * 180.70680 * 26 13 12 51 51 H 1.08994 * 109.48939 * 296.77447 * 27 10 9 52 52 H 1.08995 * 109.49072 * 56.82466 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4445 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5255 3.4385 -1.2995 8 8 1.7317 4.1029 -0.3061 9 6 1.1273 4.1123 -2.5874 10 7 1.0592 5.5649 -2.3793 11 6 0.9078 6.2736 -3.6577 12 6 0.9209 7.7831 -3.4059 13 7 -0.1669 8.1323 -2.4815 14 6 -0.2349 9.5849 -2.2734 15 1 -0.3255 10.0861 -3.2371 16 6 1.0379 10.0595 -1.5693 17 6 -1.4515 9.9197 -1.4082 18 6 -2.7117 9.5644 -2.1543 19 1 -2.6510 9.1417 -3.1463 20 6 -3.9423 9.7781 -1.5702 21 7 -4.0162 10.2924 -0.3621 22 14 -5.5043 9.3370 -2.4947 23 1 -5.8806 7.9332 -2.1896 24 1 -6.6012 10.2459 -2.0753 25 1 -5.2729 9.4813 -3.9545 26 6 -0.0155 7.4237 -1.2030 27 6 -0.0286 5.9140 -1.4549 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.9994 0.9055 -0.7161 34 1 3.9281 2.4721 0.1261 35 1 3.8532 0.9571 1.0570 36 1 1.4870 1.5661 -2.0463 37 1 0.1513 3.7440 -2.9035 38 1 1.8662 3.8901 -3.3572 39 1 -0.0374 5.9903 -4.1209 40 1 1.7316 6.0083 -4.3203 41 1 0.7796 8.3104 -4.3493 42 1 1.8767 8.0708 -2.9680 43 1 1.9046 9.8209 -2.1857 44 1 0.9871 11.1372 -1.4145 45 1 1.1284 9.5583 -0.6056 46 1 -1.4055 9.3494 -0.4804 47 1 -1.4528 10.9856 -1.1798 48 1 -4.8819 10.4431 0.0488 49 1 0.9297 7.7069 -0.7399 50 1 -0.8393 7.6890 -0.5404 51 1 -0.9843 5.6268 -1.8929 52 1 0.1124 5.3865 -0.5116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351607950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:54 Heat of formation + Delta-G solvation = -33.355161 kcal Electronic energy + Delta-G solvation = -27243.938924 eV Core-core repulsion = 23664.157272 eV Total energy + Delta-G solvation = -3579.781652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16038 -38.84001 -36.80319 -35.66058 -32.84091 -32.55021 -31.03714 -30.42496 -30.07075 -27.70274 -27.17097 -24.56757 -23.83820 -23.33350 -22.72758 -21.24026 -20.55633 -20.01642 -18.44921 -17.14405 -16.58010 -16.11611 -15.85048 -15.41318 -14.74642 -14.64247 -14.47338 -14.30677 -14.18898 -13.93031 -13.86888 -13.68272 -13.37363 -13.05303 -12.86717 -12.59534 -12.14165 -12.04643 -11.95136 -11.74680 -11.61574 -11.60022 -11.41732 -11.31228 -11.03730 -11.01829 -10.85075 -10.63859 -10.53759 -10.28145 -10.16884 -9.89730 -9.57333 -9.19772 -9.07804 -8.92370 -8.21710 -8.14790 -7.35820 -5.84876 -3.82474 2.64013 2.93569 3.40863 3.46640 3.50688 4.10603 4.35763 4.58683 4.65415 4.67390 4.71944 4.76139 5.08637 5.11648 5.19671 5.24915 5.28754 5.32949 5.44248 5.50736 5.52100 5.57178 5.59887 5.65305 5.79202 5.81220 5.88631 5.90177 5.91614 5.98052 5.99315 6.08231 6.13598 6.21143 6.31339 6.38911 6.50838 6.59905 6.75072 6.82397 7.05357 7.07525 7.26503 7.42356 7.62433 7.77475 7.99807 8.10585 8.17928 8.23115 8.63118 9.23555 9.78798 11.27146 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.003161 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.816977 B = 8855.776484 C = 9817.420482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.163 4.163 6 N -0.732 5.732 7 C 0.514 3.486 8 O -0.514 6.514 9 C 0.036 3.964 10 N -0.522 5.522 11 C 0.061 3.939 12 C 0.054 3.946 13 N -0.514 5.514 14 C 0.087 3.913 15 H 0.068 0.932 16 C -0.184 4.184 17 C 0.028 3.972 18 C -0.489 4.489 19 H 0.060 0.940 20 C 0.050 3.950 21 N -0.903 5.903 22 Si 0.889 3.111 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.061 3.939 27 C 0.056 3.944 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.020 0.980 47 H 0.018 0.982 48 H 0.257 0.743 49 H 0.034 0.966 50 H 0.093 0.907 51 H 0.037 0.963 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.988 -20.311 -3.701 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.106 0.894 5 C -0.222 4.222 6 N -0.386 5.386 7 C 0.300 3.700 8 O -0.388 6.388 9 C -0.095 4.095 10 N -0.247 5.247 11 C -0.067 4.067 12 C -0.075 4.075 13 N -0.238 5.238 14 C -0.020 4.020 15 H 0.086 0.914 16 C -0.243 4.243 17 C -0.009 4.009 18 C -0.527 4.527 19 H 0.078 0.922 20 C -0.149 4.149 21 N -0.544 5.544 22 Si 0.718 3.282 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.201 1.201 26 C -0.067 4.067 27 C -0.072 4.072 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.066 0.934 49 H 0.052 0.948 50 H 0.111 0.889 51 H 0.055 0.945 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.996 -19.741 -2.836 24.365 hybrid contribution -0.973 -0.572 -0.876 1.428 sum 13.024 -20.313 -3.712 24.413 Atomic orbital electron populations 1.21781 0.95210 1.01654 1.02488 1.21830 0.96641 0.95467 1.02873 1.20960 0.94802 0.92875 0.87715 0.89407 1.22175 0.95500 1.02772 1.01724 1.46103 1.71986 1.07043 1.13466 1.20649 0.76845 0.81788 0.90720 1.90699 1.48118 1.63577 1.36424 1.21928 1.01684 0.90589 0.95341 1.61922 1.47053 1.03415 1.12346 1.22167 0.99994 0.94574 0.89964 1.22110 0.93919 0.93887 0.97546 1.62317 1.41911 1.07968 1.11559 1.21883 0.95040 0.85620 0.99498 0.91357 1.22511 0.99233 1.01488 1.01023 1.19232 0.90732 0.96414 0.94541 1.21176 0.90241 1.39349 1.01969 0.92217 1.25009 0.98994 0.95924 0.95005 1.69967 1.24332 1.45753 1.14391 0.86640 0.83405 0.78011 0.80148 1.21016 1.21636 1.20064 1.22113 1.00852 0.91474 0.92228 1.22364 0.90756 0.97255 0.96790 0.92614 0.92436 0.92513 0.91533 0.90504 0.92659 0.91873 0.91824 0.76970 0.92087 0.88321 0.93967 0.91137 0.90943 0.94615 0.94029 0.92707 0.92832 0.96162 0.96359 0.93355 0.94755 0.88894 0.94466 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.80 37.16 0.36 -0.64 16 2 C -0.13 -0.76 5.47 -26.73 -0.15 -0.91 16 3 C 0.14 1.16 2.57 -67.93 -0.17 0.99 16 4 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 5 C -0.16 -1.29 9.48 37.15 0.35 -0.94 16 6 N -0.73 -6.18 4.53 -53.81 -0.24 -6.42 16 7 C 0.51 6.24 7.49 -10.98 -0.08 6.16 16 8 O -0.51 -8.50 14.00 5.56 0.08 -8.43 16 9 C 0.04 0.40 5.45 -4.98 -0.03 0.38 16 10 N -0.52 -7.76 4.45 -235.91 -1.05 -8.81 16 11 C 0.06 0.85 5.61 -3.77 -0.02 0.83 16 12 C 0.05 0.88 5.25 -3.77 -0.02 0.86 16 13 N -0.51 -10.19 4.41 -226.49 -1.00 -11.19 16 14 C 0.09 1.85 2.30 -67.71 -0.16 1.69 16 15 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 16 C -0.18 -3.38 8.49 37.16 0.32 -3.06 16 17 C 0.03 0.72 4.27 -27.89 -0.12 0.60 16 18 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 19 H 0.06 1.70 7.74 -52.48 -0.41 1.29 16 20 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 21 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 22 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.06 1.21 4.82 -3.77 -0.02 1.19 16 27 C 0.06 0.97 5.26 -3.76 -0.02 0.95 16 28 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.39 7.75 -51.93 -0.40 -0.01 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.40 2.23 8.60 -40.82 -0.35 1.88 16 37 H 0.06 0.62 8.12 -51.92 -0.42 0.20 16 38 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 42 H 0.04 0.59 6.60 -51.93 -0.34 0.25 16 43 H 0.04 0.69 6.59 -51.93 -0.34 0.34 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 1.01 6.46 -51.93 -0.34 0.67 16 46 H 0.02 0.56 6.11 -51.93 -0.32 0.24 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.03 0.69 6.47 -51.93 -0.34 0.35 16 50 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 51 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.09 1.61 5.85 -51.93 -0.30 1.31 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -33.09 396.24 -10.41 -43.50 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -9.73 Total: -0.34 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.15 Total: -4.72 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -1.56 Total: -53.27 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.09 -10.41 -43.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351607950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.143 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds