Wall clock time and date at job start Tue Mar 31 2020 10:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47073 * 2 1 4 4 H 1.08998 * 109.47048 * 54.99854 * 3 2 1 5 5 C 1.52994 * 109.47523 * 175.00189 * 3 2 1 6 6 N 1.46500 * 109.47145 * 295.00195 * 3 2 1 7 7 C 1.34783 * 120.00115 * 154.99687 * 6 3 2 8 8 O 1.21276 * 119.99911 * 359.97438 * 7 6 3 9 9 C 1.50699 * 120.00029 * 179.97438 * 7 6 3 10 10 N 1.46899 * 109.47125 * 180.02562 * 9 7 6 11 11 C 1.46948 * 111.00367 * 170.00194 * 10 9 7 12 12 C 1.53048 * 109.36994 * 183.19148 * 11 10 9 13 13 N 1.46962 * 109.35835 * 301.59713 * 12 11 10 14 14 C 1.46899 * 110.99727 * 183.18828 * 13 12 11 15 15 H 1.09001 * 109.47354 * 55.00102 * 14 13 12 16 16 C 1.53006 * 109.47163 * 295.00082 * 14 13 12 17 17 C 1.52997 * 109.47254 * 174.99970 * 14 13 12 18 18 C 1.50696 * 109.47268 * 294.99640 * 17 14 13 19 19 H 1.08004 * 119.99945 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00438 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99387 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00351 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47234 * 90.00117 * 22 20 18 24 24 H 1.48497 * 109.47345 * 210.00260 * 22 20 18 25 25 H 1.48502 * 109.47091 * 330.00344 * 22 20 18 26 26 C 1.46948 * 110.88294 * 59.32018 * 13 12 11 27 27 C 1.46962 * 110.99727 * 293.80087 * 10 9 7 28 28 H 1.09008 * 109.46827 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47046 * 299.99690 * 1 2 3 30 30 H 1.09001 * 109.47197 * 59.99980 * 1 2 3 31 31 H 1.09000 * 109.47088 * 240.00817 * 2 1 3 32 32 H 1.08993 * 109.47471 * 119.99939 * 2 1 3 33 33 H 1.08998 * 109.47232 * 59.99778 * 5 3 2 34 34 H 1.08996 * 109.47692 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47212 * 300.00252 * 5 3 2 36 36 H 0.97005 * 120.00234 * 335.00400 * 6 3 2 37 37 H 1.09008 * 109.46874 * 60.00098 * 9 7 6 38 38 H 1.08996 * 109.47071 * 300.00188 * 9 7 6 39 39 H 1.09003 * 109.49245 * 63.21574 * 11 10 9 40 40 H 1.08998 * 109.48890 * 303.15938 * 11 10 9 41 41 H 1.09000 * 109.49072 * 181.63580 * 12 11 10 42 42 H 1.08993 * 109.50501 * 61.56979 * 12 11 10 43 43 H 1.09000 * 109.47050 * 59.99970 * 16 14 13 44 44 H 1.09001 * 109.46801 * 180.02562 * 16 14 13 45 45 H 1.09001 * 109.46998 * 299.99678 * 16 14 13 46 46 H 1.08998 * 109.46934 * 54.99896 * 17 14 13 47 47 H 1.09006 * 109.47500 * 174.99769 * 17 14 13 48 48 H 0.97002 * 119.99896 * 179.97438 * 21 20 18 49 49 H 1.09004 * 109.49218 * 60.64290 * 26 13 12 50 50 H 1.08998 * 109.49241 * 180.70680 * 26 13 12 51 51 H 1.08994 * 109.48939 * 296.77447 * 27 10 9 52 52 H 1.08995 * 109.49072 * 56.82466 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4445 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5255 3.4385 -1.2995 8 8 1.7317 4.1029 -0.3061 9 6 1.1273 4.1123 -2.5874 10 7 1.0592 5.5649 -2.3793 11 6 0.9078 6.2736 -3.6577 12 6 0.9209 7.7831 -3.4059 13 7 -0.1669 8.1323 -2.4815 14 6 -0.2349 9.5849 -2.2734 15 1 -0.3255 10.0861 -3.2371 16 6 1.0379 10.0595 -1.5693 17 6 -1.4515 9.9197 -1.4082 18 6 -2.7117 9.5644 -2.1543 19 1 -2.6510 9.1417 -3.1463 20 6 -3.9423 9.7781 -1.5702 21 7 -4.0162 10.2924 -0.3621 22 14 -5.5043 9.3370 -2.4947 23 1 -5.8806 7.9332 -2.1896 24 1 -6.6012 10.2459 -2.0753 25 1 -5.2729 9.4813 -3.9545 26 6 -0.0155 7.4237 -1.2030 27 6 -0.0286 5.9140 -1.4549 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.9994 0.9055 -0.7161 34 1 3.9281 2.4721 0.1261 35 1 3.8532 0.9571 1.0570 36 1 1.4870 1.5661 -2.0463 37 1 0.1513 3.7440 -2.9035 38 1 1.8662 3.8901 -3.3572 39 1 -0.0374 5.9903 -4.1209 40 1 1.7316 6.0083 -4.3203 41 1 0.7796 8.3104 -4.3493 42 1 1.8767 8.0708 -2.9680 43 1 1.9046 9.8209 -2.1857 44 1 0.9871 11.1372 -1.4145 45 1 1.1284 9.5583 -0.6056 46 1 -1.4055 9.3494 -0.4804 47 1 -1.4528 10.9856 -1.1798 48 1 -4.8819 10.4431 0.0488 49 1 0.9297 7.7069 -0.7399 50 1 -0.8393 7.6890 -0.5404 51 1 -0.9843 5.6268 -1.8929 52 1 0.1124 5.3865 -0.5116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351607950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:54 Heat of formation + Delta-G solvation = -57.201132 kcal Electronic energy + Delta-G solvation = -27244.972963 eV Core-core repulsion = 23664.157272 eV Total energy + Delta-G solvation = -3580.815691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17391 -40.14762 -37.78642 -36.89743 -34.83947 -33.42930 -32.52236 -31.79298 -30.81693 -29.33455 -28.65047 -25.81620 -25.05218 -24.58450 -24.33119 -21.97898 -21.51384 -21.40320 -19.99297 -18.35561 -18.05967 -17.49056 -17.09039 -16.58021 -16.36301 -15.99621 -15.70423 -15.58385 -15.29610 -15.02439 -14.71335 -14.68866 -14.50040 -14.36801 -14.20310 -13.76063 -13.64497 -13.33361 -13.19319 -13.05518 -12.86009 -12.67060 -12.63549 -12.52075 -12.38578 -12.30168 -12.15119 -11.96728 -11.92808 -11.80251 -11.61941 -11.52914 -11.09561 -10.94384 -10.66909 -10.47465 -10.02294 -9.30024 -8.91552 -8.09705 -6.14997 1.40813 1.42189 1.53158 1.72476 2.13886 2.47094 3.01211 3.12717 3.27925 3.74527 3.91387 3.99747 4.09014 4.11285 4.19703 4.24838 4.29889 4.37974 4.40751 4.44274 4.50228 4.52002 4.59834 4.60521 4.65830 4.71084 4.75395 4.86353 4.91451 4.95247 4.99927 5.00933 5.07507 5.11513 5.11799 5.19379 5.21983 5.29309 5.31254 5.41124 5.49089 5.64461 5.69538 5.89825 5.95323 6.05053 6.32399 6.43228 6.54626 6.67727 6.98829 7.39309 7.50709 9.02626 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.003161 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.816977 B = 8855.776484 C = 9817.420482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C 0.138 3.862 4 H 0.056 0.944 5 C -0.157 4.157 6 N -0.713 5.713 7 C 0.510 3.490 8 O -0.568 6.568 9 C 0.037 3.963 10 N -0.533 5.533 11 C 0.066 3.934 12 C 0.052 3.948 13 N -0.528 5.528 14 C 0.095 3.905 15 H 0.070 0.930 16 C -0.172 4.172 17 C 0.034 3.966 18 C -0.498 4.498 19 H 0.059 0.941 20 C -0.007 4.007 21 N -0.942 5.942 22 Si 0.959 3.041 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.263 1.263 26 C 0.071 3.929 27 C 0.071 3.929 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.414 0.586 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.039 0.961 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.037 0.963 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.041 0.959 46 H -0.007 1.007 47 H -0.009 1.009 48 H 0.258 0.742 49 H 0.028 0.972 50 H 0.051 0.949 51 H 0.025 0.975 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.966 -22.871 -6.570 28.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.216 4.216 6 N -0.367 5.367 7 C 0.297 3.703 8 O -0.446 6.446 9 C -0.093 4.093 10 N -0.258 5.258 11 C -0.062 4.062 12 C -0.076 4.076 13 N -0.253 5.253 14 C -0.013 4.013 15 H 0.089 0.911 16 C -0.231 4.231 17 C -0.003 4.003 18 C -0.536 4.536 19 H 0.077 0.923 20 C -0.203 4.203 21 N -0.584 5.584 22 Si 0.785 3.215 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.187 1.187 26 C -0.057 4.057 27 C -0.057 4.057 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.251 0.749 37 H 0.096 0.904 38 H 0.154 0.846 39 H 0.058 0.942 40 H 0.128 0.872 41 H 0.104 0.896 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.011 0.989 47 H 0.010 0.990 48 H 0.067 0.933 49 H 0.046 0.954 50 H 0.070 0.930 51 H 0.044 0.956 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.990 -22.354 -5.753 27.523 hybrid contribution -1.236 0.185 0.042 1.251 sum 13.753 -22.170 -5.710 26.707 Atomic orbital electron populations 1.21792 0.95845 1.02168 1.01455 1.21779 0.95919 0.93620 1.04461 1.21003 0.95103 0.93995 0.86527 0.92616 1.22115 0.94971 1.01256 1.03221 1.45961 1.70382 1.06081 1.14323 1.20947 0.76241 0.82682 0.90460 1.90689 1.50775 1.64933 1.38177 1.22066 1.03653 0.88011 0.95614 1.61839 1.45419 1.06068 1.12492 1.22213 1.01488 0.92656 0.89840 1.22253 0.92421 0.96037 0.96896 1.62235 1.44335 1.06843 1.11861 1.21610 0.94011 0.87087 0.98590 0.91139 1.22368 0.98741 1.01458 1.00551 1.19084 0.92804 0.94134 0.94294 1.21470 0.91326 1.38842 1.01956 0.92254 1.25899 1.02671 0.95877 0.95868 1.70110 1.25186 1.47004 1.16083 0.85535 0.78989 0.77741 0.79266 1.20489 1.21213 1.18743 1.21883 0.98664 0.93336 0.91830 1.22045 0.91325 0.95098 0.97224 0.91301 0.94237 0.92837 0.89309 0.89480 0.90785 0.94836 0.90661 0.74869 0.90436 0.84614 0.94222 0.87231 0.89560 0.94475 0.91451 0.92348 0.93994 0.98868 0.99045 0.93308 0.95396 0.93044 0.95636 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.80 71.98 0.71 -1.10 16 2 C -0.12 -1.12 5.47 30.60 0.17 -0.96 16 3 C 0.14 2.15 2.57 44.99 0.12 2.27 16 4 H 0.06 1.25 7.58 -2.39 -0.02 1.23 16 5 C -0.16 -2.30 9.48 71.98 0.68 -1.62 16 6 N -0.71 -10.80 4.53 -442.54 -2.00 -12.80 16 7 C 0.51 11.88 7.49 87.66 0.66 12.54 16 8 O -0.57 -19.27 14.00 -3.02 -0.04 -19.32 16 9 C 0.04 0.73 5.45 85.56 0.47 1.19 16 10 N -0.53 -14.97 4.45 -900.30 -4.00 -18.97 16 11 C 0.07 1.63 5.61 86.31 0.48 2.12 16 12 C 0.05 1.58 5.25 86.31 0.45 2.03 16 13 N -0.53 -21.02 4.41 -870.48 -3.84 -24.87 16 14 C 0.10 4.09 2.30 44.92 0.10 4.19 16 15 H 0.07 2.98 8.11 -2.39 -0.02 2.96 16 16 C -0.17 -6.36 8.49 71.98 0.61 -5.75 16 17 C 0.03 1.85 4.27 29.85 0.13 1.97 16 18 C -0.50 -28.95 8.84 25.60 0.23 -28.72 16 19 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 20 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 21 N -0.94 -59.36 13.29 21.45 0.28 -59.08 16 22 Si 0.96 46.25 29.54 68.60 2.03 48.28 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 26 C 0.07 2.94 4.82 86.31 0.42 3.35 16 27 C 0.07 2.54 5.26 86.31 0.45 2.99 16 28 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.64 7.75 -2.39 -0.02 0.63 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.41 3.34 8.60 -92.70 -0.80 2.54 16 37 H 0.08 1.32 8.12 -2.38 -0.02 1.30 16 38 H 0.14 1.68 8.03 -2.39 -0.02 1.66 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.94 8.07 -2.39 -0.02 1.92 16 41 H 0.09 2.39 8.12 -2.39 -0.02 2.37 16 42 H 0.04 1.13 6.60 -2.39 -0.02 1.12 16 43 H 0.07 2.13 6.59 -2.39 -0.02 2.12 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.04 1.62 6.46 -2.39 -0.02 1.61 16 46 H -0.01 -0.41 6.11 -2.39 -0.01 -0.43 16 47 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 48 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 49 H 0.03 1.17 6.47 -2.39 -0.02 1.15 16 50 H 0.05 2.51 6.07 -2.39 -0.01 2.49 16 51 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.08 2.92 5.85 -2.39 -0.01 2.91 16 Total: -1.00 -75.75 396.24 -1.37 -77.12 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.08 Total: 15.08 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 6.13 Total: -5.45 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -9.56 Total: -115.71 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.04 Total: -19.32 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -75.75 -1.37 -77.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351607950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.923 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds