Wall clock time and date at job start Tue Mar 31 2020 10:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47275 * 2 1 4 4 N 1.46902 * 109.47212 * 120.00456 * 2 1 3 5 5 C 1.48077 * 110.99988 * 66.43077 * 4 2 1 6 6 C 1.50746 * 112.93327 * 84.35252 * 5 4 2 7 7 C 1.54515 * 108.94247 * 92.65136 * 6 5 4 8 8 N 1.40085 * 111.50479 * 283.98565 * 7 6 5 9 9 C 1.46904 * 110.99339 * 188.14821 * 8 7 6 10 10 C 1.53003 * 109.47264 * 66.05220 * 9 8 7 11 11 C 1.50697 * 109.47207 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00188 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00039 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99595 * 0.02562 * 13 11 10 15 15 C 1.46490 * 120.00079 * 180.02562 * 13 11 10 16 16 C 1.50702 * 109.47488 * 90.00373 * 15 13 11 17 17 H 1.07999 * 119.99276 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00341 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99859 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47315 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47257 * 120.00109 * 20 18 16 23 23 H 1.48497 * 109.47261 * 239.99709 * 20 18 16 24 24 C 1.47685 * 114.57267 * 61.45795 * 8 7 6 25 25 C 1.47743 * 110.99903 * 194.03409 * 4 2 1 26 26 H 1.09003 * 109.47154 * 294.13920 * 1 2 3 27 27 H 1.09004 * 109.47311 * 54.13437 * 1 2 3 28 28 H 1.09001 * 109.47645 * 174.13734 * 1 2 3 29 29 H 1.09005 * 109.46905 * 239.99852 * 2 1 3 30 30 H 1.08995 * 109.47442 * 300.00494 * 3 2 1 31 31 H 1.08997 * 109.47165 * 60.00439 * 3 2 1 32 32 H 1.09003 * 109.47377 * 179.97438 * 3 2 1 33 33 H 1.09000 * 108.78685 * 323.45998 * 5 4 2 34 34 H 1.08994 * 108.69662 * 205.17839 * 5 4 2 35 35 H 1.08993 * 109.55796 * 332.80955 * 6 5 4 36 36 H 1.08999 * 109.63912 * 212.53729 * 6 5 4 37 37 H 1.08992 * 109.07046 * 163.46619 * 7 6 5 38 38 H 1.08997 * 109.01639 * 44.46864 * 7 6 5 39 39 H 1.09001 * 109.47558 * 306.04656 * 9 8 7 40 40 H 1.09009 * 109.47001 * 186.04478 * 9 8 7 41 41 H 1.09001 * 109.47293 * 59.99275 * 10 9 8 42 42 H 1.09009 * 109.46506 * 299.99562 * 10 9 8 43 43 H 1.08998 * 109.47545 * 89.99812 * 14 13 11 44 44 H 1.09007 * 109.46776 * 209.99881 * 14 13 11 45 45 H 1.08995 * 109.47284 * 329.99274 * 14 13 11 46 46 H 1.09007 * 109.47247 * 210.00565 * 15 13 11 47 47 H 1.09002 * 109.47650 * 329.99900 * 15 13 11 48 48 H 0.96996 * 120.00165 * 179.97438 * 19 18 16 49 49 H 1.08997 * 109.73765 * 38.32983 * 24 8 7 50 50 H 1.09003 * 109.73892 * 159.03687 * 24 8 7 51 51 H 1.08999 * 108.99374 * 313.42813 * 25 4 2 52 52 H 1.08997 * 108.99167 * 72.18126 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.6754 -2.1322 1.1586 6 6 2.6718 -2.9526 0.3797 7 6 3.7399 -3.5006 1.3524 8 7 4.6526 -2.5059 1.7263 9 6 5.7689 -3.0768 2.4919 10 6 6.5876 -4.0008 1.5879 11 6 7.7330 -4.5859 2.3730 12 8 7.8799 -4.2932 3.5408 13 7 8.5937 -5.4353 1.7778 14 6 8.4159 -5.7893 0.3674 15 6 9.7069 -6.0046 2.5412 16 6 9.2683 -7.2964 3.1816 17 1 8.2609 -7.6569 3.0348 18 6 10.1531 -8.0178 3.9546 19 7 11.3800 -7.5789 4.1328 20 14 9.6092 -9.6186 4.7489 21 1 8.1921 -9.8893 4.3971 22 1 10.4627 -10.7301 4.2575 23 1 9.7403 -9.5089 6.2240 24 6 4.0538 -1.3594 2.4390 25 6 3.4578 -0.4295 1.4126 26 1 -0.3633 0.4203 0.9378 27 1 -0.3634 0.6021 -0.8328 28 1 -0.3634 -1.0223 -0.1050 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 0.6928 -2.2453 0.7005 34 1 1.6316 -2.5101 2.1800 35 1 3.1507 -2.3266 -0.3732 36 1 2.1612 -3.7833 -0.1074 37 1 4.2788 -4.3146 0.8677 38 1 3.2446 -3.8832 2.2448 39 1 5.3777 -3.6465 3.3348 40 1 6.4054 -2.2725 2.8609 41 1 6.9787 -3.4311 0.7449 42 1 5.9511 -4.8052 1.2188 43 1 8.9651 -5.0840 -0.2563 44 1 8.7937 -6.7972 0.1953 45 1 7.3566 -5.7503 0.1137 46 1 10.5455 -6.1972 1.8720 47 1 10.0140 -5.3013 3.3153 48 1 12.0024 -8.0862 4.6770 49 1 3.2735 -1.7121 3.1134 50 1 4.8232 -0.8363 3.0068 51 1 3.9859 -0.5587 0.4679 52 1 3.5839 0.5992 1.7502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356978282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:26 Heat of formation + Delta-G solvation = -21.460716 kcal Electronic energy + Delta-G solvation = -26870.509904 eV Core-core repulsion = 23291.244034 eV Total energy + Delta-G solvation = -3579.265871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.19103 -38.93769 -37.19585 -34.80378 -33.41639 -32.63392 -32.29575 -30.70779 -28.21441 -27.77007 -26.82257 -25.80239 -25.47504 -23.49948 -22.14047 -21.65883 -20.60015 -19.36211 -18.31247 -17.07765 -16.54809 -16.36409 -16.07816 -15.58750 -15.39500 -15.02933 -14.93792 -14.72586 -14.19026 -13.80468 -13.58537 -13.29086 -13.04232 -12.82557 -12.67022 -12.51746 -12.35160 -12.20133 -12.16014 -11.99934 -11.98320 -11.77581 -11.50585 -11.37178 -11.30697 -11.15344 -11.07050 -10.88694 -10.87117 -10.68331 -10.57470 -10.42290 -10.15783 -9.60419 -8.87585 -8.43779 -8.38740 -8.28507 -7.62251 -6.04217 -4.08869 3.29219 3.36394 3.39705 3.47739 3.55482 3.68595 4.17349 4.45453 4.52825 4.61880 4.70432 4.79601 4.96940 5.00598 5.04384 5.14746 5.21487 5.26307 5.29173 5.31450 5.34779 5.37087 5.39669 5.49446 5.51425 5.56155 5.61284 5.64067 5.71792 5.75184 5.82214 5.85985 5.91246 5.92695 5.94883 5.98302 6.09066 6.14091 6.17145 6.22684 6.86519 6.91623 7.05101 7.06943 7.35486 7.45651 7.55880 7.92462 8.24091 8.44202 8.90979 9.11820 9.56239 11.03889 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.002371 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.225369 B =11805.002727 C =12005.108178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.078 3.922 3 C -0.150 4.150 4 N -0.543 5.543 5 C 0.051 3.949 6 C -0.148 4.148 7 C 0.069 3.931 8 N -0.558 5.558 9 C 0.078 3.922 10 C -0.136 4.136 11 C 0.504 3.496 12 O -0.546 6.546 13 N -0.604 5.604 14 C 0.085 3.915 15 C 0.244 3.756 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.061 3.939 25 C 0.062 3.938 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.022 0.978 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.032 0.968 47 H 0.043 0.957 48 H 0.263 0.737 49 H 0.050 0.950 50 H 0.083 0.917 51 H 0.050 0.950 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.942 14.509 -11.765 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 C -0.208 4.208 4 N -0.269 5.269 5 C -0.076 4.076 6 C -0.187 4.187 7 C -0.061 4.061 8 N -0.283 5.283 9 C -0.049 4.049 10 C -0.177 4.177 11 C 0.290 3.710 12 O -0.424 6.424 13 N -0.336 5.336 14 C -0.060 4.060 15 C 0.125 3.875 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.066 4.066 25 C -0.065 4.065 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.101 0.899 51 H 0.068 0.932 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.739 14.968 -11.076 27.136 hybrid contribution -0.069 -1.781 0.325 1.812 sum -19.808 13.187 -10.751 26.112 Atomic orbital electron populations 1.21873 0.94546 1.01570 1.02118 1.21564 0.95491 0.94715 0.91247 1.21954 1.01319 0.95406 1.02084 1.62305 1.16473 1.10233 1.37842 1.22027 0.98188 0.86766 1.00624 1.22043 0.97281 1.00411 0.98974 1.21099 0.93515 0.94033 0.97453 1.59045 1.12134 1.11041 1.46081 1.21788 0.91315 0.97898 0.93867 1.21691 0.96516 0.99680 0.99767 1.20308 0.83438 0.79655 0.87552 1.90664 1.73928 1.61121 1.16665 1.48160 1.29934 1.44506 1.10984 1.21623 1.00486 1.01249 0.82600 1.19285 0.83040 0.93773 0.91417 1.21465 0.98203 1.05989 1.30661 0.92509 1.24950 0.94862 0.98214 0.96211 1.69944 1.04786 1.39052 1.39612 0.86440 0.78623 0.83066 0.79271 1.19855 1.20950 1.20864 1.21891 0.98248 0.91573 0.94925 1.21912 0.86626 0.98946 0.99064 0.91796 0.92454 0.92820 0.94298 0.92421 0.91846 0.92300 0.91132 0.91170 0.90999 0.91025 0.90665 0.95964 0.93824 0.89930 0.88982 0.89709 0.93752 0.90879 0.92502 0.95049 0.93854 0.92777 0.93137 0.89905 0.93153 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.05 37.16 0.34 -0.62 16 2 C 0.08 0.60 2.62 -67.72 -0.18 0.43 16 3 C -0.15 -1.03 8.50 37.15 0.32 -0.72 16 4 N -0.54 -4.83 4.62 -227.69 -1.05 -5.88 16 5 C 0.05 0.45 5.00 -4.30 -0.02 0.43 16 6 C -0.15 -1.32 5.60 -27.07 -0.15 -1.47 16 7 C 0.07 0.74 4.84 -6.55 -0.03 0.70 16 8 N -0.56 -6.46 3.99 -239.69 -0.96 -7.42 16 9 C 0.08 1.11 4.25 -3.82 -0.02 1.10 16 10 C -0.14 -2.02 4.15 -27.88 -0.12 -2.13 16 11 C 0.50 10.51 7.67 -10.99 -0.08 10.43 16 12 O -0.55 -13.77 15.56 5.55 0.09 -13.68 16 13 N -0.60 -12.97 2.86 -182.95 -0.52 -13.50 16 14 C 0.08 1.35 10.24 59.85 0.61 1.96 16 15 C 0.24 6.49 5.16 -5.20 -0.03 6.46 16 16 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 17 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 20 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.06 0.63 5.37 -4.50 -0.02 0.61 16 25 C 0.06 0.57 3.82 -4.47 -0.02 0.56 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 6.46 -51.93 -0.34 0.02 16 29 H 0.04 0.32 7.60 -51.93 -0.39 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.42 6.51 -51.93 -0.34 0.08 16 33 H 0.07 0.55 5.92 -51.93 -0.31 0.25 16 34 H 0.07 0.68 6.51 -51.93 -0.34 0.34 16 35 H 0.07 0.70 6.66 -51.93 -0.35 0.36 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.82 5.94 -51.93 -0.31 0.51 16 38 H 0.02 0.26 7.59 -51.93 -0.39 -0.14 16 39 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 40 H 0.08 1.23 7.63 -51.92 -0.40 0.83 16 41 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 42 H 0.08 1.14 5.63 -51.92 -0.29 0.85 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.20 8.07 -51.92 -0.42 0.78 16 45 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 46 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 47 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.05 0.56 6.77 -51.93 -0.35 0.21 16 50 H 0.08 0.85 7.55 -51.93 -0.39 0.46 16 51 H 0.05 0.51 6.97 -51.93 -0.36 0.15 16 52 H 0.08 0.65 7.03 -51.93 -0.36 0.29 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -32.53 388.22 -10.10 -42.63 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -9.40 Total: -2.89 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 0.18 Total: 3.97 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -1.79 Total: -52.92 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.53 -10.10 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356978282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.167 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds