Wall clock time and date at job start Tue Mar 31 2020 10:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47275 * 2 1 4 4 N 1.46902 * 109.47212 * 120.00456 * 2 1 3 5 5 C 1.48077 * 110.99988 * 66.43077 * 4 2 1 6 6 C 1.50746 * 112.93327 * 84.35252 * 5 4 2 7 7 C 1.54515 * 108.94247 * 92.65136 * 6 5 4 8 8 N 1.40085 * 111.50479 * 283.98565 * 7 6 5 9 9 C 1.46904 * 110.99339 * 188.14821 * 8 7 6 10 10 C 1.53003 * 109.47264 * 66.05220 * 9 8 7 11 11 C 1.50697 * 109.47207 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00188 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00039 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99595 * 0.02562 * 13 11 10 15 15 C 1.46490 * 120.00079 * 180.02562 * 13 11 10 16 16 C 1.50702 * 109.47488 * 90.00373 * 15 13 11 17 17 H 1.07999 * 119.99276 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00341 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99859 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47315 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47257 * 120.00109 * 20 18 16 23 23 H 1.48497 * 109.47261 * 239.99709 * 20 18 16 24 24 C 1.47685 * 114.57267 * 61.45795 * 8 7 6 25 25 C 1.47743 * 110.99903 * 194.03409 * 4 2 1 26 26 H 1.09003 * 109.47154 * 294.13920 * 1 2 3 27 27 H 1.09004 * 109.47311 * 54.13437 * 1 2 3 28 28 H 1.09001 * 109.47645 * 174.13734 * 1 2 3 29 29 H 1.09005 * 109.46905 * 239.99852 * 2 1 3 30 30 H 1.08995 * 109.47442 * 300.00494 * 3 2 1 31 31 H 1.08997 * 109.47165 * 60.00439 * 3 2 1 32 32 H 1.09003 * 109.47377 * 179.97438 * 3 2 1 33 33 H 1.09000 * 108.78685 * 323.45998 * 5 4 2 34 34 H 1.08994 * 108.69662 * 205.17839 * 5 4 2 35 35 H 1.08993 * 109.55796 * 332.80955 * 6 5 4 36 36 H 1.08999 * 109.63912 * 212.53729 * 6 5 4 37 37 H 1.08992 * 109.07046 * 163.46619 * 7 6 5 38 38 H 1.08997 * 109.01639 * 44.46864 * 7 6 5 39 39 H 1.09001 * 109.47558 * 306.04656 * 9 8 7 40 40 H 1.09009 * 109.47001 * 186.04478 * 9 8 7 41 41 H 1.09001 * 109.47293 * 59.99275 * 10 9 8 42 42 H 1.09009 * 109.46506 * 299.99562 * 10 9 8 43 43 H 1.08998 * 109.47545 * 89.99812 * 14 13 11 44 44 H 1.09007 * 109.46776 * 209.99881 * 14 13 11 45 45 H 1.08995 * 109.47284 * 329.99274 * 14 13 11 46 46 H 1.09007 * 109.47247 * 210.00565 * 15 13 11 47 47 H 1.09002 * 109.47650 * 329.99900 * 15 13 11 48 48 H 0.96996 * 120.00165 * 179.97438 * 19 18 16 49 49 H 1.08997 * 109.73765 * 38.32983 * 24 8 7 50 50 H 1.09003 * 109.73892 * 159.03687 * 24 8 7 51 51 H 1.08999 * 108.99374 * 313.42813 * 25 4 2 52 52 H 1.08997 * 108.99167 * 72.18126 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.6754 -2.1322 1.1586 6 6 2.6718 -2.9526 0.3797 7 6 3.7399 -3.5006 1.3524 8 7 4.6526 -2.5059 1.7263 9 6 5.7689 -3.0768 2.4919 10 6 6.5876 -4.0008 1.5879 11 6 7.7330 -4.5859 2.3730 12 8 7.8799 -4.2932 3.5408 13 7 8.5937 -5.4353 1.7778 14 6 8.4159 -5.7893 0.3674 15 6 9.7069 -6.0046 2.5412 16 6 9.2683 -7.2964 3.1816 17 1 8.2609 -7.6569 3.0348 18 6 10.1531 -8.0178 3.9546 19 7 11.3800 -7.5789 4.1328 20 14 9.6092 -9.6186 4.7489 21 1 8.1921 -9.8893 4.3971 22 1 10.4627 -10.7301 4.2575 23 1 9.7403 -9.5089 6.2240 24 6 4.0538 -1.3594 2.4390 25 6 3.4578 -0.4295 1.4126 26 1 -0.3633 0.4203 0.9378 27 1 -0.3634 0.6021 -0.8328 28 1 -0.3634 -1.0223 -0.1050 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 0.6928 -2.2453 0.7005 34 1 1.6316 -2.5101 2.1800 35 1 3.1507 -2.3266 -0.3732 36 1 2.1612 -3.7833 -0.1074 37 1 4.2788 -4.3146 0.8677 38 1 3.2446 -3.8832 2.2448 39 1 5.3777 -3.6465 3.3348 40 1 6.4054 -2.2725 2.8609 41 1 6.9787 -3.4311 0.7449 42 1 5.9511 -4.8052 1.2188 43 1 8.9651 -5.0840 -0.2563 44 1 8.7937 -6.7972 0.1953 45 1 7.3566 -5.7503 0.1137 46 1 10.5455 -6.1972 1.8720 47 1 10.0140 -5.3013 3.3153 48 1 12.0024 -8.0862 4.6770 49 1 3.2735 -1.7121 3.1134 50 1 4.8232 -0.8363 3.0068 51 1 3.9859 -0.5587 0.4679 52 1 3.5839 0.5992 1.7502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356978282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:25 Heat of formation + Delta-G solvation = -43.683638 kcal Electronic energy + Delta-G solvation = -26871.473562 eV Core-core repulsion = 23291.244034 eV Total energy + Delta-G solvation = -3580.229529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14364 -40.43040 -38.06509 -36.59713 -34.78316 -34.19344 -33.12550 -31.84442 -29.77755 -28.66069 -27.77940 -27.22312 -26.41903 -25.15423 -23.36842 -22.52078 -21.53465 -20.12650 -19.81897 -18.72254 -18.19579 -17.37370 -17.20218 -16.82268 -16.77309 -16.29225 -16.02254 -15.86291 -15.70299 -14.91329 -14.46291 -14.29423 -14.23136 -13.94006 -13.80830 -13.67200 -13.46571 -13.35559 -13.27067 -13.19517 -13.08304 -12.86390 -12.80052 -12.72632 -12.54389 -12.26526 -12.24713 -12.22082 -11.91478 -11.83179 -11.74449 -11.67241 -11.55757 -11.19762 -10.66765 -10.60991 -9.42669 -9.27142 -9.07155 -8.24206 -6.39226 1.34550 1.37099 1.48840 1.83370 2.26668 2.40449 2.87423 2.99201 3.05136 3.73738 3.86044 3.90769 3.96086 4.05946 4.14180 4.16391 4.29367 4.34557 4.39213 4.43349 4.48149 4.49529 4.60645 4.64501 4.71668 4.76390 4.84990 4.88288 4.91918 4.94918 4.94966 4.95642 4.98593 5.00898 5.04612 5.09826 5.13389 5.21118 5.22493 5.30596 5.37157 5.48884 5.54853 5.83163 6.00514 6.04503 6.17674 6.27606 6.45922 6.68201 6.78589 7.26545 7.47727 8.83054 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.002371 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.225369 B =11805.002727 C =12005.108178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 C -0.147 4.147 4 N -0.550 5.550 5 C 0.052 3.948 6 C -0.136 4.136 7 C 0.064 3.936 8 N -0.549 5.549 9 C 0.086 3.914 10 C -0.115 4.115 11 C 0.494 3.506 12 O -0.601 6.601 13 N -0.612 5.612 14 C 0.079 3.921 15 C 0.258 3.742 16 C -0.541 4.541 17 H 0.052 0.948 18 C 0.005 3.995 19 N -0.929 5.929 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.282 1.282 24 C 0.061 3.939 25 C 0.071 3.929 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.012 0.988 39 H 0.019 0.981 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.024 0.976 47 H -0.003 1.003 48 H 0.267 0.733 49 H 0.043 0.957 50 H 0.082 0.918 51 H 0.045 0.955 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.983 14.232 -13.758 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.205 4.205 4 N -0.276 5.276 5 C -0.075 4.075 6 C -0.176 4.176 7 C -0.066 4.066 8 N -0.274 5.274 9 C -0.042 4.042 10 C -0.155 4.155 11 C 0.283 3.717 12 O -0.483 6.483 13 N -0.343 5.343 14 C -0.063 4.063 15 C 0.136 3.864 16 C -0.580 4.580 17 H 0.070 0.930 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.208 1.208 24 C -0.066 4.066 25 C -0.057 4.057 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.076 0.924 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.063 0.937 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.805 14.696 -13.128 29.390 hybrid contribution 0.564 -1.638 0.933 1.967 sum -21.241 13.059 -12.195 27.757 Atomic orbital electron populations 1.21841 0.93711 1.01876 1.02272 1.21634 0.96126 0.94907 0.90467 1.21930 1.01063 0.94982 1.02495 1.62317 1.16019 1.10489 1.38741 1.22010 0.98813 0.86663 1.00034 1.21959 0.96593 1.00789 0.98209 1.21204 0.93815 0.93994 0.97556 1.59110 1.11865 1.11183 1.45230 1.21605 0.92010 0.97171 0.93371 1.21591 0.94206 1.00347 0.99365 1.21372 0.84164 0.78810 0.87324 1.90633 1.75364 1.62884 1.19422 1.48209 1.28700 1.44420 1.12980 1.21929 1.03389 1.01523 0.79450 1.18758 0.84750 0.92234 0.90662 1.21718 0.98047 1.06865 1.31329 0.92955 1.25894 0.94870 1.01989 0.96638 1.70060 1.05918 1.40641 1.40223 0.85345 0.78623 0.78739 0.77953 1.19137 1.19274 1.20763 1.21932 0.98020 0.91401 0.95268 1.21796 0.86874 0.98823 0.98190 0.92458 0.91248 0.92661 0.94559 0.91254 0.92202 0.92664 0.89947 0.92379 0.91383 0.89413 0.90327 0.96972 0.96266 0.91094 0.86250 0.87408 0.91088 0.91637 0.88796 0.95849 0.98506 0.92376 0.93878 0.89990 0.93693 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.05 71.98 0.65 -0.92 16 2 C 0.08 1.03 2.62 44.91 0.12 1.15 16 3 C -0.15 -1.75 8.50 71.98 0.61 -1.14 16 4 N -0.55 -8.93 4.62 -874.29 -4.04 -12.97 16 5 C 0.05 0.82 5.00 85.34 0.43 1.25 16 6 C -0.14 -2.11 5.60 30.38 0.17 -1.94 16 7 C 0.06 1.25 4.84 88.05 0.43 1.68 16 8 N -0.55 -12.05 3.99 -912.24 -3.64 -15.69 16 9 C 0.09 2.42 4.25 86.30 0.37 2.79 16 10 C -0.12 -3.21 4.15 29.85 0.12 -3.09 16 11 C 0.49 20.73 7.67 87.66 0.67 21.40 16 12 O -0.60 -31.65 15.56 -3.04 -0.05 -31.70 16 13 N -0.61 -26.32 2.86 -851.13 -2.43 -28.75 16 14 C 0.08 2.35 10.24 127.77 1.31 3.66 16 15 C 0.26 14.19 5.16 85.64 0.44 14.63 16 16 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 17 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 18 C 0.00 0.29 5.46 84.65 0.46 0.75 16 19 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 20 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 C 0.06 1.23 5.37 85.43 0.46 1.69 16 25 C 0.07 1.22 3.82 85.42 0.33 1.54 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.05 0.60 6.46 -2.39 -0.02 0.59 16 29 H 0.04 0.52 7.60 -2.38 -0.02 0.50 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.70 6.51 -2.39 -0.02 0.68 16 33 H 0.08 1.11 5.92 -2.39 -0.01 1.09 16 34 H 0.06 1.06 6.51 -2.39 -0.02 1.05 16 35 H 0.07 1.15 6.66 -2.39 -0.02 1.13 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.49 5.94 -2.39 -0.01 1.48 16 38 H 0.01 0.27 7.59 -2.39 -0.02 0.25 16 39 H 0.02 0.63 8.06 -2.39 -0.02 0.61 16 40 H 0.07 2.15 7.63 -2.38 -0.02 2.13 16 41 H 0.12 2.76 8.11 -2.39 -0.02 2.74 16 42 H 0.11 2.57 5.63 -2.38 -0.01 2.55 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 2.05 8.07 -2.38 -0.02 2.03 16 45 H 0.09 2.09 6.44 -2.39 -0.02 2.08 16 46 H 0.02 1.30 8.07 -2.38 -0.02 1.28 16 47 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 48 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.04 0.95 6.77 -2.39 -0.02 0.93 16 50 H 0.08 1.67 7.55 -2.39 -0.02 1.65 16 51 H 0.04 0.84 6.97 -2.39 -0.02 0.82 16 52 H 0.08 1.32 7.03 -2.39 -0.02 1.31 16 Total: -1.00 -73.31 388.22 -0.16 -73.47 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.87 Total: 12.80 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.81 Total: 11.99 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -9.82 Total: -114.03 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.05 Total: -31.70 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.31 -0.16 -73.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356978282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.790 kcal (2) G-P(sol) polarization free energy of solvation -73.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds