Wall clock time and date at job start Tue Mar 31 2020 10:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47473 * 2 1 4 4 C 1.53005 * 109.47170 * 239.99673 * 2 1 3 5 5 N 1.46500 * 109.46655 * 60.00461 * 4 2 1 6 6 C 1.34781 * 119.99492 * 180.02562 * 5 4 2 7 7 O 1.21584 * 120.00125 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99851 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00373 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47675 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47343 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46876 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00572 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99732 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00119 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99936 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47385 * 90.00305 * 16 14 12 18 18 H 1.48501 * 109.47029 * 210.00343 * 16 14 12 19 19 H 1.48499 * 109.47191 * 329.99824 * 16 14 12 20 20 C 1.53005 * 109.46952 * 120.00098 * 2 1 3 21 21 N 1.46901 * 109.47121 * 284.94714 * 20 2 1 22 22 C 1.48538 * 110.99791 * 58.72694 * 21 20 2 23 23 C 1.54942 * 103.22415 * 159.72305 * 22 21 20 24 24 C 1.54602 * 102.92156 * 322.58807 * 23 22 21 25 25 C 1.47900 * 111.00101 * 176.12746 * 21 20 2 26 26 H 1.08999 * 109.47155 * 322.81804 * 1 2 3 27 27 H 1.09000 * 109.47293 * 82.81498 * 1 2 3 28 28 H 1.09001 * 109.47367 * 202.81412 * 1 2 3 29 29 H 1.08995 * 109.47143 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.46779 * 300.00272 * 3 2 1 31 31 H 1.09004 * 109.46811 * 59.99568 * 3 2 1 32 32 H 1.08999 * 109.46891 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47247 * 300.00234 * 4 2 1 34 34 H 0.96991 * 120.00206 * 359.97438 * 5 4 2 35 35 H 0.96999 * 119.99938 * 359.97438 * 8 6 5 36 36 H 1.09004 * 109.47393 * 300.00012 * 9 8 6 37 37 H 1.09005 * 109.46988 * 59.99180 * 9 8 6 38 38 H 1.09008 * 109.46737 * 299.99777 * 10 9 8 39 39 H 1.08996 * 109.46938 * 59.99826 * 10 9 8 40 40 H 1.09004 * 109.46711 * 299.99897 * 11 10 9 41 41 H 1.08997 * 109.47717 * 59.99285 * 11 10 9 42 42 H 0.96997 * 120.00310 * 179.97438 * 15 14 12 43 43 H 1.08994 * 109.47152 * 44.94340 * 20 2 1 44 44 H 1.08998 * 109.47261 * 164.94804 * 20 2 1 45 45 H 1.08994 * 110.67181 * 278.15462 * 22 21 20 46 46 H 1.09000 * 110.66620 * 41.29588 * 22 21 20 47 47 H 1.09003 * 110.72259 * 204.23218 * 23 22 21 48 48 H 1.08999 * 110.72080 * 80.94331 * 23 22 21 49 49 H 1.09001 * 110.30725 * 263.04423 * 24 23 22 50 50 H 1.08992 * 110.39044 * 140.91835 * 24 23 22 51 51 H 1.08995 * 109.91318 * 333.50605 * 25 21 20 52 52 H 1.09002 * 109.91736 * 94.60613 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8769 -0.4915 -3.6695 7 8 2.5759 -1.4801 -3.7810 8 7 1.4282 0.1441 -4.7699 9 6 1.7820 -0.3563 -6.1005 10 6 1.1490 0.5391 -7.1673 11 6 1.5181 0.0160 -8.5570 12 6 0.8950 0.8985 -9.6077 13 1 0.2953 1.7472 -9.3138 14 6 1.0904 0.6222 -10.9443 15 7 0.5463 1.3919 -11.8613 16 14 2.1282 -0.8455 -11.4526 17 1 1.2601 -2.0426 -11.5876 18 1 2.7845 -0.5607 -12.7540 19 1 3.1652 -1.0997 -10.4206 20 6 2.0399 -0.7213 1.2493 21 7 1.8663 0.1472 2.4213 22 6 0.4392 0.5167 2.6033 23 6 0.3708 0.9446 4.0908 24 6 1.3316 -0.0505 4.7814 25 6 2.2633 -0.5521 3.6626 26 1 -0.3633 0.8187 0.6211 27 1 -0.3634 0.1285 -1.0196 28 1 -0.3634 -0.9473 0.3985 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 0.9938 0.7577 -2.3564 35 1 0.8709 0.9330 -4.6809 36 1 2.8660 -0.3482 -6.2154 37 1 1.4122 -1.3753 -6.2156 38 1 0.0650 0.5305 -7.0524 39 1 1.5184 1.5581 -7.0523 40 1 2.6020 0.0243 -8.6721 41 1 1.1484 -1.0029 -8.6717 42 1 0.6841 1.1978 -12.8016 43 1 1.4753 -1.6424 1.3929 44 1 3.0967 -0.9583 1.1261 45 1 0.1708 1.3478 1.9512 46 1 -0.2068 -0.3419 2.4199 47 1 -0.6423 0.8342 4.4777 48 1 0.7224 1.9689 4.2140 49 1 0.7716 -0.8823 5.2087 50 1 1.9084 0.4543 5.5563 51 1 2.1459 -1.6283 3.5363 52 1 3.2998 -0.3178 3.9056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358235708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:55 Heat of formation + Delta-G solvation = -37.679690 kcal Electronic energy + Delta-G solvation = -25870.775229 eV Core-core repulsion = 22290.806051 eV Total energy + Delta-G solvation = -3579.969178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45535 -39.57580 -37.26121 -35.44234 -33.77297 -33.18701 -31.57760 -31.12217 -29.45629 -27.60005 -27.51089 -26.74745 -25.15001 -22.72293 -21.52806 -21.23338 -20.81178 -20.22735 -19.50996 -18.07916 -16.87878 -16.66271 -16.42758 -15.86921 -15.70993 -15.16657 -14.59224 -14.50691 -14.29839 -14.23667 -14.11974 -13.78263 -13.62047 -13.48302 -13.06569 -12.71842 -12.67179 -12.36769 -12.10266 -11.92865 -11.92368 -11.85566 -11.73988 -11.50278 -11.11408 -11.04170 -11.01753 -10.95247 -10.86938 -10.67727 -10.25550 -9.98536 -9.80156 -9.65976 -9.21128 -9.19376 -8.84429 -8.62450 -8.54052 -6.05041 -4.03601 2.78693 3.32774 3.36528 3.40238 3.45115 3.52997 4.13695 4.21372 4.33383 4.40375 4.45954 4.47818 4.50191 4.59978 4.80950 4.95021 5.04781 5.09825 5.15347 5.24850 5.29254 5.32954 5.34289 5.39419 5.40302 5.49699 5.53233 5.58760 5.60700 5.63114 5.71809 5.72431 5.73550 5.79001 5.99301 6.06804 6.10545 6.41388 6.42709 6.46428 6.49724 6.60200 6.72758 6.85508 7.03771 7.25728 7.38981 7.77375 8.13672 8.51624 8.74302 8.98834 9.57370 11.08185 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.044383 B = 0.001799 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.715295 B =15564.229221 C =15933.999698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.074 4.074 3 C -0.131 4.131 4 C 0.152 3.848 5 N -0.747 5.747 6 C 0.700 3.300 7 O -0.595 6.595 8 N -0.742 5.742 9 C 0.133 3.867 10 C -0.113 4.113 11 C -0.011 4.011 12 C -0.522 4.522 13 H 0.072 0.928 14 C 0.066 3.934 15 N -0.903 5.903 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.059 3.941 21 N -0.510 5.510 22 C 0.025 3.975 23 C -0.128 4.128 24 C -0.131 4.131 25 C 0.034 3.966 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.394 0.606 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.048 0.952 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.071 0.929 51 H 0.043 0.957 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 -1.258 35.471 35.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.074 4.074 3 C -0.188 4.188 4 C 0.027 3.973 5 N -0.405 5.405 6 C 0.400 3.600 7 O -0.474 6.474 8 N -0.397 5.397 9 C 0.010 3.990 10 C -0.151 4.151 11 C -0.049 4.049 12 C -0.560 4.560 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.070 4.070 21 N -0.234 5.234 22 C -0.102 4.102 23 C -0.166 4.166 24 C -0.169 4.169 25 C -0.094 4.094 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.229 0.771 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.062 0.938 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.700 -1.724 35.056 35.105 hybrid contribution -0.509 -0.830 -0.269 1.010 sum 0.190 -2.554 34.786 34.880 Atomic orbital electron populations 1.22432 0.94274 1.02416 1.02592 1.20791 0.96028 0.97120 0.93505 1.21776 1.01470 0.93968 1.01619 1.21081 0.98904 0.95375 0.81945 1.45124 1.57403 1.33534 1.04403 1.15998 0.80513 0.83069 0.80437 1.90912 1.42804 1.27639 1.86009 1.45319 1.56137 1.32655 1.05550 1.21500 1.00078 0.98322 0.79120 1.21705 1.00017 0.98436 0.94927 1.19503 0.96977 0.96672 0.91769 1.21103 1.31995 1.12980 0.89899 0.91026 1.25025 0.95401 0.96410 0.96638 1.69909 1.44869 1.38740 1.00713 0.86776 0.81275 0.83212 0.78051 1.20264 1.21379 1.18855 1.22283 1.01588 0.93471 0.89656 1.64798 1.18207 1.38541 1.01894 1.23721 0.89430 1.00500 0.96525 1.22545 0.99276 0.99819 0.94977 1.22387 0.97579 0.99090 0.97886 1.22863 1.00167 0.96610 0.89733 0.91003 0.92254 0.92624 0.92421 0.93313 0.91117 0.91574 0.91897 0.77060 0.77231 0.92005 0.92044 0.92189 0.92134 0.96271 0.96718 0.92720 0.94269 0.90211 0.88934 0.93379 0.91181 0.90747 0.91666 0.91043 0.93819 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 7.19 37.16 0.27 -0.72 16 2 C -0.07 -0.51 0.53 -154.50 -0.08 -0.59 16 3 C -0.13 -0.91 7.78 37.16 0.29 -0.62 16 4 C 0.15 1.46 4.50 -4.04 -0.02 1.44 16 5 N -0.75 -7.89 4.72 -65.22 -0.31 -8.20 16 6 C 0.70 10.51 8.57 -86.92 -0.74 9.77 16 7 O -0.60 -11.56 16.34 5.29 0.09 -11.47 16 8 N -0.74 -10.50 5.56 -65.23 -0.36 -10.86 16 9 C 0.13 2.28 5.67 -4.04 -0.02 2.25 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 12 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 13 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 16 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 20 C 0.06 0.40 4.15 -3.82 -0.02 0.38 16 21 N -0.51 -3.31 4.29 -230.45 -0.99 -4.30 16 22 C 0.03 0.14 4.20 -1.89 -0.01 0.13 16 23 C -0.13 -0.62 7.06 -24.86 -0.18 -0.80 16 24 C -0.13 -0.63 6.93 -25.37 -0.18 -0.81 16 25 C 0.03 0.20 6.70 -2.75 -0.02 0.18 16 26 H 0.07 0.38 4.84 -51.93 -0.25 0.13 16 27 H 0.06 0.40 6.54 -51.93 -0.34 0.06 16 28 H 0.05 0.36 7.20 -51.93 -0.37 -0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.33 6.86 -51.93 -0.36 -0.03 16 31 H 0.07 0.48 5.77 -51.93 -0.30 0.18 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.39 3.19 6.33 -40.82 -0.26 2.93 16 35 H 0.39 4.44 8.49 -40.82 -0.35 4.09 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.04 0.27 7.60 -51.93 -0.39 -0.13 16 44 H 0.08 0.56 8.05 -51.93 -0.42 0.15 16 45 H 0.09 0.50 4.64 -51.93 -0.24 0.26 16 46 H 0.05 0.28 6.88 -51.93 -0.36 -0.08 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.04 0.25 7.67 -51.93 -0.40 -0.15 16 52 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -33.40 390.45 -10.43 -43.83 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -9.46 Total: 0.28 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.39 Total: -5.31 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.89 Total: -50.45 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.40 -10.43 -43.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358235708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.151 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds