Wall clock time and date at job start Tue Mar 31 2020 09:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99630 * 2 1 4 4 H 1.48503 * 109.47504 * 269.99946 * 3 2 1 5 5 H 1.48499 * 109.47414 * 30.00029 * 3 2 1 6 6 H 1.48499 * 109.47368 * 149.99979 * 3 2 1 7 7 C 1.37876 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99494 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99993 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47491 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47327 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00006 * 179.97438 * 12 11 10 14 14 O 1.21585 * 119.99518 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99568 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00646 * 359.97438 * 15 13 12 17 17 C 1.52997 * 109.47377 * 270.00434 * 16 15 13 18 18 C 1.52998 * 109.47222 * 180.02562 * 17 16 15 19 19 N 1.46902 * 109.47472 * 179.97438 * 18 17 16 20 20 C 1.46505 * 119.99455 * 180.02562 * 15 13 12 21 21 C 1.52997 * 109.47212 * 90.00023 * 20 15 13 22 22 C 1.54267 * 110.03373 * 292.90986 * 21 20 15 23 23 C 1.54968 * 104.16137 * 217.13581 * 22 21 20 24 24 C 1.54884 * 102.77441 * 37.88396 * 23 22 21 25 25 C 1.53874 * 110.03593 * 175.68906 * 21 20 15 26 26 H 0.96999 * 120.00295 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47404 * 60.00066 * 9 7 2 28 28 H 1.08998 * 109.47548 * 299.99840 * 9 7 2 29 29 H 1.09003 * 109.47256 * 59.99826 * 10 9 7 30 30 H 1.09001 * 109.47421 * 300.00014 * 10 9 7 31 31 H 1.09003 * 109.47100 * 59.99624 * 11 10 9 32 32 H 1.09001 * 109.46712 * 300.00341 * 11 10 9 33 33 H 0.97002 * 120.00168 * 0.02562 * 12 11 10 34 34 H 1.09006 * 109.46911 * 30.00087 * 16 15 13 35 35 H 1.08996 * 109.47170 * 149.99599 * 16 15 13 36 36 H 1.09006 * 109.46817 * 299.99710 * 17 16 15 37 37 H 1.08996 * 109.47652 * 59.99460 * 17 16 15 38 38 H 1.09006 * 109.46906 * 299.99555 * 18 17 16 39 39 H 1.08994 * 109.47772 * 59.99447 * 18 17 16 40 40 H 1.00889 * 111.00449 * 179.97438 * 19 18 17 41 41 H 1.00906 * 110.99300 * 303.95655 * 19 18 17 42 42 H 1.09002 * 109.47068 * 210.00083 * 20 15 13 43 43 H 1.09001 * 109.47372 * 330.00170 * 20 15 13 44 44 H 1.09004 * 110.01939 * 54.29375 * 21 20 15 45 45 H 1.09001 * 110.48609 * 335.77840 * 22 21 20 46 46 H 1.08999 * 110.49311 * 98.42344 * 22 21 20 47 47 H 1.08997 * 110.72048 * 279.57487 * 23 22 21 48 48 H 1.08993 * 110.92252 * 156.29196 * 23 22 21 49 49 H 1.09009 * 110.48779 * 203.40596 * 24 23 22 50 50 H 1.09001 * 110.59973 * 80.82109 * 24 23 22 51 51 H 1.09003 * 110.03243 * 238.56963 * 25 21 20 52 52 H 1.08996 * 110.02723 * 359.95243 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 7 6.0401 -4.0175 -0.0002 13 6 7.3652 -4.2637 -0.0006 14 8 8.1552 -3.3395 -0.0010 15 7 7.8144 -5.5344 -0.0004 16 6 6.8626 -6.6479 0.0007 17 6 6.5321 -7.0350 1.4436 18 6 5.5385 -8.1984 1.4447 19 7 5.2216 -8.5706 2.8300 20 6 9.2548 -5.8020 -0.0002 21 6 9.7561 -5.8950 1.4423 22 6 9.6501 -4.5175 2.1285 23 6 10.9108 -4.4432 3.0266 24 6 11.9933 -5.1261 2.1543 25 6 11.2452 -6.2822 1.4590 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8746 -0.6799 -0.8911 29 1 3.6580 -3.1505 -0.8907 30 1 3.6587 -3.1501 0.8892 31 1 5.9150 -2.1224 0.8890 32 1 5.9150 -2.1225 -0.8909 33 1 5.4098 -4.7549 -0.0002 34 1 5.9496 -6.3460 -0.5126 35 1 7.3026 -7.5025 -0.5131 36 1 7.4451 -7.3370 1.9569 37 1 6.0921 -6.1804 1.9574 38 1 4.6254 -7.8969 0.9312 39 1 5.9788 -9.0530 0.9310 40 1 4.5663 -9.3372 2.8577 41 1 6.0602 -8.7923 3.3456 42 1 9.4495 -6.7434 -0.5140 43 1 9.7747 -4.9934 -0.5140 44 1 9.1723 -6.6324 1.9934 45 1 9.6633 -3.7195 1.3862 46 1 8.7455 -4.4614 2.7341 47 1 10.7570 -4.9953 3.9537 48 1 11.1795 -3.4078 3.2354 49 1 12.7982 -5.5136 2.7791 50 1 12.3874 -4.4279 1.4158 51 1 11.3843 -7.2071 2.0188 52 1 11.6105 -6.4047 0.4394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417515275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:06 Heat of formation + Delta-G solvation = -59.698895 kcal Electronic energy + Delta-G solvation = -26856.144654 eV Core-core repulsion = 23275.220651 eV Total energy + Delta-G solvation = -3580.924002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46292 -38.21575 -36.72355 -35.54882 -34.77002 -33.26595 -31.56305 -30.91491 -29.61716 -28.72398 -27.11306 -25.10587 -24.54961 -22.54653 -21.83694 -20.80826 -20.51935 -19.83849 -19.45011 -18.10114 -16.81774 -16.60223 -16.30410 -15.77716 -15.60823 -15.22076 -15.02831 -14.53153 -14.37179 -14.19274 -13.95738 -13.82731 -13.52596 -13.25654 -12.78717 -12.65330 -12.59597 -12.20743 -11.90586 -11.87011 -11.78051 -11.51171 -11.28196 -11.09022 -11.06498 -10.98301 -10.94556 -10.85970 -10.73687 -10.46915 -10.10540 -9.90593 -9.76141 -9.61300 -9.19522 -9.03242 -8.89776 -8.52971 -8.50081 -6.03609 -4.02028 2.67392 3.32333 3.33742 3.41193 3.46141 3.93830 4.22825 4.45205 4.47216 4.52065 4.55094 4.57865 4.81242 4.96252 4.99099 5.04075 5.15174 5.23495 5.30680 5.33530 5.35917 5.42642 5.47934 5.52263 5.59850 5.63628 5.69896 5.74056 5.75627 5.78348 5.87447 5.97106 6.01673 6.08788 6.13928 6.24010 6.38852 6.43189 6.51505 6.58168 6.75285 6.77605 6.88388 7.00008 7.07805 7.27260 7.40626 7.78763 8.07034 8.53269 8.74786 9.00495 9.58858 11.09686 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.003029 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.490827 B = 9241.857709 C =10650.109570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.741 5.741 13 C 0.705 3.295 14 O -0.587 6.587 15 N -0.630 5.630 16 C 0.113 3.887 17 C -0.141 4.141 18 C 0.063 3.937 19 N -0.851 5.851 20 C 0.141 3.859 21 C -0.109 4.109 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.117 4.117 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.394 0.606 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.343 0.657 41 H 0.339 0.661 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.060 0.940 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.259 -20.092 2.749 29.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.151 4.151 11 C 0.009 3.991 12 N -0.397 5.397 13 C 0.406 3.594 14 O -0.465 6.465 15 N -0.367 5.367 16 C -0.012 4.012 17 C -0.180 4.180 18 C -0.069 4.069 19 N -0.380 5.380 20 C 0.018 3.982 21 C -0.129 4.129 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.155 4.155 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.079 0.921 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.373 -18.516 2.778 28.414 hybrid contribution 0.310 -0.542 -0.161 0.644 sum 21.683 -19.057 2.618 28.986 Atomic orbital electron populations 1.69913 1.06317 1.26920 1.51142 1.25024 0.94740 0.99223 0.94499 0.86779 0.80443 0.83535 0.78570 1.20269 1.21405 1.18850 1.21102 0.89342 0.94487 1.50933 0.91024 1.19492 0.97205 0.91488 0.96646 1.21698 0.90795 1.00951 1.01617 1.21496 0.95630 0.80237 1.01720 1.45498 1.04963 1.10016 1.79194 1.15901 0.82987 0.82739 0.77752 1.90851 1.54852 1.42758 1.58030 1.47099 1.06511 1.04185 1.78881 1.21462 0.93322 0.89899 0.96508 1.22141 0.99289 0.99278 0.97329 1.21736 0.99099 0.96327 0.89728 1.58629 1.18598 1.46953 1.13833 1.21494 0.79296 1.01401 0.96053 1.22281 0.95712 0.98330 0.96564 1.22609 0.96801 0.97467 0.99105 1.22511 0.95622 1.00230 0.98004 1.22330 0.97580 0.97407 0.98750 1.22127 0.94500 0.98278 1.00601 0.92731 0.96300 0.96759 0.92284 0.92153 0.92023 0.92067 0.77073 0.90598 0.90363 0.91472 0.90440 0.90612 0.95615 0.84481 0.84889 0.91163 0.89733 0.91235 0.88704 0.92678 0.92208 0.91856 0.92154 0.91646 0.92072 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.11 -2.14 5.27 -26.73 -0.14 -2.29 16 11 C 0.13 2.27 5.67 -4.04 -0.02 2.24 16 12 N -0.74 -10.64 5.42 -65.22 -0.35 -10.99 16 13 C 0.70 10.34 7.69 -86.92 -0.67 9.67 16 14 O -0.59 -10.60 13.38 5.29 0.07 -10.53 16 15 N -0.63 -6.77 2.42 -179.43 -0.43 -7.20 16 16 C 0.11 0.89 5.22 -4.05 -0.02 0.87 16 17 C -0.14 -1.13 5.77 -26.73 -0.15 -1.28 16 18 C 0.06 0.44 6.79 -3.82 -0.03 0.42 16 19 N -0.85 -6.35 9.62 -10.37 -0.10 -6.45 16 20 C 0.14 1.34 4.75 -4.04 -0.02 1.32 16 21 C -0.11 -1.00 3.15 -89.50 -0.28 -1.28 16 22 C -0.12 -1.43 5.36 -25.03 -0.13 -1.56 16 23 C -0.13 -1.24 6.91 -24.70 -0.17 -1.41 16 24 C -0.12 -1.03 6.83 -25.08 -0.17 -1.20 16 25 C -0.12 -0.89 6.46 -25.61 -0.17 -1.06 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 28 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.39 4.81 6.20 -40.82 -0.25 4.55 16 34 H 0.08 0.59 6.36 -51.93 -0.33 0.26 16 35 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 36 H 0.07 0.53 6.14 -51.93 -0.32 0.21 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.34 2.05 9.08 -39.30 -0.36 1.69 16 41 H 0.34 2.14 8.99 -39.29 -0.35 1.78 16 42 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 43 H 0.08 0.97 7.30 -51.93 -0.38 0.59 16 44 H 0.07 0.62 6.11 -51.93 -0.32 0.30 16 45 H 0.09 1.38 5.47 -51.93 -0.28 1.10 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -32.97 398.10 -10.89 -43.86 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -9.66 Total: 4.43 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.52 Total: -9.21 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.11 Total: -51.86 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.97 -10.89 -43.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417515275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.834 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds