Wall clock time and date at job start Tue Mar 31 2020 09:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99630 * 2 1 4 4 H 1.48503 * 109.47504 * 269.99946 * 3 2 1 5 5 H 1.48499 * 109.47414 * 30.00029 * 3 2 1 6 6 H 1.48499 * 109.47368 * 149.99979 * 3 2 1 7 7 C 1.37876 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99494 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99993 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47491 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47327 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00006 * 179.97438 * 12 11 10 14 14 O 1.21585 * 119.99518 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99568 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00646 * 359.97438 * 15 13 12 17 17 C 1.52997 * 109.47377 * 270.00434 * 16 15 13 18 18 C 1.52998 * 109.47222 * 180.02562 * 17 16 15 19 19 N 1.46902 * 109.47472 * 179.97438 * 18 17 16 20 20 C 1.46505 * 119.99455 * 180.02562 * 15 13 12 21 21 C 1.52997 * 109.47212 * 90.00023 * 20 15 13 22 22 C 1.54267 * 110.03373 * 292.90986 * 21 20 15 23 23 C 1.54968 * 104.16137 * 217.13581 * 22 21 20 24 24 C 1.54884 * 102.77441 * 37.88396 * 23 22 21 25 25 C 1.53874 * 110.03593 * 175.68906 * 21 20 15 26 26 H 0.96999 * 120.00295 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47404 * 60.00066 * 9 7 2 28 28 H 1.08998 * 109.47548 * 299.99840 * 9 7 2 29 29 H 1.09003 * 109.47256 * 59.99826 * 10 9 7 30 30 H 1.09001 * 109.47421 * 300.00014 * 10 9 7 31 31 H 1.09003 * 109.47100 * 59.99624 * 11 10 9 32 32 H 1.09001 * 109.46712 * 300.00341 * 11 10 9 33 33 H 0.97002 * 120.00168 * 0.02562 * 12 11 10 34 34 H 1.09006 * 109.46911 * 30.00087 * 16 15 13 35 35 H 1.08996 * 109.47170 * 149.99599 * 16 15 13 36 36 H 1.09006 * 109.46817 * 299.99710 * 17 16 15 37 37 H 1.08996 * 109.47652 * 59.99460 * 17 16 15 38 38 H 1.09006 * 109.46906 * 299.99555 * 18 17 16 39 39 H 1.08994 * 109.47772 * 59.99447 * 18 17 16 40 40 H 1.00889 * 111.00449 * 179.97438 * 19 18 17 41 41 H 1.00906 * 110.99300 * 303.95655 * 19 18 17 42 42 H 1.09002 * 109.47068 * 210.00083 * 20 15 13 43 43 H 1.09001 * 109.47372 * 330.00170 * 20 15 13 44 44 H 1.09004 * 110.01939 * 54.29375 * 21 20 15 45 45 H 1.09001 * 110.48609 * 335.77840 * 22 21 20 46 46 H 1.08999 * 110.49311 * 98.42344 * 22 21 20 47 47 H 1.08997 * 110.72048 * 279.57487 * 23 22 21 48 48 H 1.08993 * 110.92252 * 156.29196 * 23 22 21 49 49 H 1.09009 * 110.48779 * 203.40596 * 24 23 22 50 50 H 1.09001 * 110.59973 * 80.82109 * 24 23 22 51 51 H 1.09003 * 110.03243 * 238.56963 * 25 21 20 52 52 H 1.08996 * 110.02723 * 359.95243 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 7 6.0401 -4.0175 -0.0002 13 6 7.3652 -4.2637 -0.0006 14 8 8.1552 -3.3395 -0.0010 15 7 7.8144 -5.5344 -0.0004 16 6 6.8626 -6.6479 0.0007 17 6 6.5321 -7.0350 1.4436 18 6 5.5385 -8.1984 1.4447 19 7 5.2216 -8.5706 2.8300 20 6 9.2548 -5.8020 -0.0002 21 6 9.7561 -5.8950 1.4423 22 6 9.6501 -4.5175 2.1285 23 6 10.9108 -4.4432 3.0266 24 6 11.9933 -5.1261 2.1543 25 6 11.2452 -6.2822 1.4590 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8746 -0.6799 -0.8911 29 1 3.6580 -3.1505 -0.8907 30 1 3.6587 -3.1501 0.8892 31 1 5.9150 -2.1224 0.8890 32 1 5.9150 -2.1225 -0.8909 33 1 5.4098 -4.7549 -0.0002 34 1 5.9496 -6.3460 -0.5126 35 1 7.3026 -7.5025 -0.5131 36 1 7.4451 -7.3370 1.9569 37 1 6.0921 -6.1804 1.9574 38 1 4.6254 -7.8969 0.9312 39 1 5.9788 -9.0530 0.9310 40 1 4.5663 -9.3372 2.8577 41 1 6.0602 -8.7923 3.3456 42 1 9.4495 -6.7434 -0.5140 43 1 9.7747 -4.9934 -0.5140 44 1 9.1723 -6.6324 1.9934 45 1 9.6633 -3.7195 1.3862 46 1 8.7455 -4.4614 2.7341 47 1 10.7570 -4.9953 3.9537 48 1 11.1795 -3.4078 3.2354 49 1 12.7982 -5.5136 2.7791 50 1 12.3874 -4.4279 1.4158 51 1 11.3843 -7.2071 2.0188 52 1 11.6105 -6.4047 0.4394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417515275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:06 Heat of formation + Delta-G solvation = -81.638294 kcal Electronic energy + Delta-G solvation = -26857.096018 eV Core-core repulsion = 23275.220651 eV Total energy + Delta-G solvation = -3581.875366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48452 -39.08348 -37.51197 -36.98136 -35.56616 -35.12106 -33.28398 -31.74028 -30.50091 -29.49768 -28.76881 -25.88415 -25.57592 -24.11077 -22.48751 -22.19899 -21.56541 -20.81615 -20.35266 -19.25667 -18.75151 -17.65480 -17.08835 -16.66986 -16.56016 -16.23758 -16.16381 -15.87996 -15.53504 -15.19633 -15.08120 -14.79448 -14.67765 -14.38686 -14.11476 -13.81983 -13.67140 -13.40411 -13.24049 -12.93188 -12.70058 -12.66637 -12.48974 -12.19535 -11.96390 -11.90432 -11.88544 -11.79823 -11.75681 -11.68833 -11.60121 -11.51922 -11.32905 -11.18154 -10.91169 -10.75989 -10.11117 -9.55855 -9.46029 -8.29264 -6.32969 1.36643 1.38438 1.50507 1.68698 2.18956 2.36537 2.95334 3.06437 3.64216 3.72372 3.78930 3.86074 3.92037 4.07890 4.20111 4.21267 4.32994 4.36909 4.40901 4.49468 4.50815 4.57735 4.62100 4.67872 4.72581 4.81129 4.82494 4.88373 4.90093 4.93563 4.94542 5.03221 5.07688 5.08379 5.16195 5.25592 5.31334 5.37450 5.42597 5.48425 5.53248 5.55663 5.62345 5.66227 5.68646 5.97457 6.27834 6.28851 6.61990 6.74644 7.00258 7.31762 7.62173 8.87216 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.003029 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.490827 B = 9241.857709 C =10650.109570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.010 4.010 10 C -0.098 4.098 11 C 0.148 3.852 12 N -0.736 5.736 13 C 0.699 3.301 14 O -0.625 6.625 15 N -0.621 5.621 16 C 0.109 3.891 17 C -0.131 4.131 18 C 0.065 3.935 19 N -0.868 5.868 20 C 0.138 3.862 21 C -0.102 4.102 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.111 4.111 26 H 0.266 0.734 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.405 0.595 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.350 0.650 41 H 0.345 0.655 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.030 0.970 47 H 0.067 0.933 48 H 0.053 0.947 49 H 0.076 0.924 50 H 0.058 0.942 51 H 0.078 0.922 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.489 -21.927 2.443 32.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.048 4.048 10 C -0.136 4.136 11 C 0.023 3.977 12 N -0.393 5.393 13 C 0.401 3.599 14 O -0.506 6.506 15 N -0.356 5.356 16 C -0.014 4.014 17 C -0.170 4.170 18 C -0.066 4.066 19 N -0.399 5.399 20 C 0.015 3.985 21 C -0.121 4.121 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.159 4.159 25 C -0.149 4.149 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.077 0.923 51 H 0.097 0.903 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 23.612 -20.420 2.473 31.315 hybrid contribution -0.435 -0.053 -0.034 0.440 sum 23.177 -20.473 2.440 31.020 Atomic orbital electron populations 1.70055 1.08182 1.28128 1.52725 1.25966 0.95587 1.03374 0.94210 0.85708 0.79481 0.78563 0.79234 1.19122 1.20959 1.17310 1.21450 0.91827 0.93275 1.50221 0.94417 1.19446 0.94120 0.94526 0.96753 1.21458 0.92079 0.98149 1.01907 1.21096 0.93936 0.81726 1.00909 1.45254 1.05426 1.09240 1.79389 1.16089 0.82489 0.83765 0.77603 1.90835 1.55660 1.44441 1.59654 1.47142 1.07653 1.03408 1.77445 1.21695 0.93087 0.89802 0.96805 1.22007 0.99503 0.98484 0.96981 1.21698 0.98630 0.96531 0.89763 1.58620 1.19327 1.47651 1.14289 1.21657 0.78140 1.02216 0.96444 1.22228 0.97261 0.96636 0.96015 1.22501 0.96646 0.98328 0.98547 1.22516 0.95375 1.00179 0.98344 1.22334 0.97510 0.97525 0.98579 1.22118 0.92776 0.98472 1.01577 0.92491 0.96270 0.96126 0.91732 0.92163 0.93179 0.92639 0.75754 0.90453 0.87086 0.91039 0.93576 0.91252 0.93435 0.83624 0.84202 0.87560 0.91929 0.90443 0.91860 0.95084 0.91400 0.92792 0.90531 0.92312 0.90303 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 2 C 0.01 0.32 5.47 84.65 0.46 0.79 16 3 Si 0.95 45.17 27.47 68.60 1.88 47.06 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 7 C -0.53 -30.62 9.66 25.60 0.25 -30.37 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 11 C 0.15 5.04 5.67 86.38 0.49 5.53 16 12 N -0.74 -20.92 5.42 -478.53 -2.59 -23.51 16 13 C 0.70 20.42 7.69 179.05 1.38 21.80 16 14 O -0.62 -23.11 13.38 -3.98 -0.05 -23.16 16 15 N -0.62 -12.46 2.42 -839.85 -2.03 -14.50 16 16 C 0.11 1.45 5.22 86.38 0.45 1.90 16 17 C -0.13 -1.85 5.77 30.59 0.18 -1.68 16 18 C 0.07 0.78 6.79 86.30 0.59 1.36 16 19 N -0.87 -11.64 9.62 -186.72 -1.80 -13.44 16 20 C 0.14 2.35 4.75 86.38 0.41 2.76 16 21 C -0.10 -1.68 3.15 -10.07 -0.03 -1.71 16 22 C -0.12 -2.91 5.36 31.70 0.17 -2.74 16 23 C -0.13 -2.44 6.91 31.91 0.22 -2.22 16 24 C -0.12 -1.82 6.83 31.67 0.22 -1.61 16 25 C -0.11 -1.38 6.46 31.32 0.20 -1.18 16 26 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 27 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 28 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.41 9.58 6.20 -92.71 -0.58 9.00 16 34 H 0.08 1.04 6.36 -2.38 -0.02 1.02 16 35 H 0.11 0.84 7.89 -2.39 -0.02 0.82 16 36 H 0.07 0.96 6.14 -2.38 -0.01 0.94 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.05 0.38 8.14 -2.39 -0.02 0.37 16 40 H 0.35 3.67 9.08 -89.70 -0.81 2.86 16 41 H 0.35 3.77 8.99 -89.69 -0.81 2.96 16 42 H 0.11 1.08 7.89 -2.39 -0.02 1.06 16 43 H 0.06 1.39 7.30 -2.39 -0.02 1.37 16 44 H 0.08 1.18 6.11 -2.38 -0.01 1.17 16 45 H 0.06 1.94 5.47 -2.39 -0.01 1.92 16 46 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.08 0.79 7.67 -2.39 -0.02 0.77 16 Total: -1.00 -73.64 398.10 -0.38 -74.02 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -1.34 Total: 24.54 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 5.26 Total: -11.29 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -6.13 Total: -111.16 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -73.64 -0.38 -74.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417515275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.617 kcal (2) G-P(sol) polarization free energy of solvation -73.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds