Wall clock time and date at job start Tue Mar 31 2020 09:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47080 * 119.99899 * 9 7 5 12 12 H 1.48502 * 109.47342 * 239.99982 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21583 * 120.00270 * 359.72083 * 15 14 13 17 17 N 1.34775 * 119.99585 * 179.72218 * 15 14 13 18 18 C 1.46507 * 119.99876 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46968 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.50162 * 299.91898 * 19 18 17 21 21 C 1.53120 * 109.50176 * 179.80744 * 19 18 17 22 22 C 1.53116 * 109.16280 * 182.40514 * 21 19 18 23 23 C 1.53032 * 109.27932 * 57.65016 * 22 21 19 24 24 N 1.46856 * 109.52359 * 300.82356 * 23 22 21 25 25 C 1.46842 * 111.19508 * 61.74200 * 24 23 22 26 26 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 27 27 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 28 28 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 31 31 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 32 32 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 34 34 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 35 35 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 36 36 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 37 37 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 38 38 H 0.97000 * 120.00523 * 0.02562 * 17 15 14 39 39 H 1.08998 * 109.47039 * 300.00042 * 18 17 15 40 40 H 1.08994 * 109.46660 * 60.00264 * 18 17 15 41 41 H 1.09001 * 109.47069 * 60.00583 * 20 19 18 42 42 H 1.09003 * 109.47031 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.47390 * 300.00427 * 20 19 18 44 44 H 1.09008 * 109.52122 * 302.30767 * 21 19 18 45 45 H 1.08997 * 109.52515 * 62.49378 * 21 19 18 46 46 H 1.09002 * 109.50063 * 297.71196 * 22 21 19 47 47 H 1.08998 * 109.53568 * 177.61390 * 22 21 19 48 48 H 1.09003 * 109.46400 * 180.81091 * 23 22 21 49 49 H 1.09002 * 109.45420 * 60.83207 * 23 22 21 50 50 H 1.00901 * 110.99896 * 297.64408 * 24 23 22 51 51 H 1.09002 * 109.46201 * 178.24073 * 25 24 23 52 52 H 1.08997 * 109.45941 * 58.27133 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4247 1.5663 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5808 -1.4763 3.7812 17 7 1.4372 0.1510 4.7699 18 6 1.7956 -0.3462 6.1006 19 6 1.1665 0.5523 7.1673 20 6 1.6862 1.9818 7.0022 21 6 1.5368 0.0305 8.5584 22 6 0.8546 0.8990 9.6190 23 6 -0.6587 0.8775 9.3926 24 7 -0.9612 1.3865 8.0487 25 6 -0.3558 0.5409 7.0120 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2494 33 1 1.6766 -1.7490 -1.2492 34 1 2.8594 -1.8841 -4.7335 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 0.9942 0.7584 2.3564 38 1 0.8792 0.9394 4.6809 39 1 1.4258 -1.3646 6.2197 40 1 2.8799 -0.3381 6.2115 41 1 1.4206 2.3529 6.0123 42 1 1.2381 2.6214 7.7626 43 1 2.7704 1.9896 7.1143 44 1 1.2010 -1.0015 8.6616 45 1 2.6178 0.0775 8.6893 46 1 1.2198 1.9230 9.5406 47 1 1.0798 0.5072 10.6108 48 1 -1.1463 1.5066 10.1374 49 1 -1.0251 -0.1449 9.4847 50 1 -0.6658 2.3463 7.9506 51 1 -0.6234 0.9253 6.0278 52 1 -0.7238 -0.4799 7.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418195292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:08 Heat of formation + Delta-G solvation = -59.982227 kcal Electronic energy + Delta-G solvation = -26749.382905 eV Core-core repulsion = 23168.446616 eV Total energy + Delta-G solvation = -3580.936289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56731 -39.45457 -37.22154 -35.23884 -33.57318 -32.66838 -32.01366 -31.50832 -27.68761 -27.17479 -26.65373 -26.49318 -25.30755 -24.16675 -22.88294 -21.89708 -20.60686 -19.30213 -18.72914 -17.69091 -16.45840 -16.32914 -16.02606 -15.81353 -15.26813 -15.07151 -14.75456 -14.54006 -14.24429 -13.92383 -13.83366 -13.46765 -13.31984 -13.02121 -12.89862 -12.72637 -12.60486 -12.06175 -12.05503 -12.01927 -11.89694 -11.70280 -11.50463 -11.13066 -11.01282 -10.84870 -10.82806 -10.78758 -10.63097 -10.38156 -10.22284 -10.02219 -9.85908 -9.18809 -9.15748 -8.90158 -8.74505 -8.51225 -8.35187 -5.98939 -4.00099 2.87210 3.30680 3.38779 3.41103 3.44108 3.84771 4.19849 4.25189 4.33867 4.44385 4.50358 4.58832 4.76209 4.81856 5.01477 5.04569 5.21166 5.27739 5.36623 5.42710 5.44489 5.46405 5.52582 5.57206 5.59453 5.65986 5.66761 5.73847 5.77161 5.80496 5.91327 6.19784 6.24113 6.30310 6.43654 6.47784 6.57513 6.62234 6.64735 6.82745 6.95015 7.05869 7.08941 7.09479 7.17493 7.66069 7.78415 7.99970 8.20771 8.41855 8.82064 9.04978 9.62934 11.12537 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.034344 B = 0.002235 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.076668 B =12522.657387 C =12867.415909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.699 3.301 16 O -0.595 6.595 17 N -0.750 5.750 18 C 0.155 3.845 19 C -0.110 4.110 20 C -0.145 4.145 21 C -0.106 4.106 22 C -0.158 4.158 23 C 0.055 3.945 24 N -0.684 5.684 25 C 0.068 3.932 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.393 0.607 38 H 0.392 0.608 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.340 0.660 51 H 0.076 0.924 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 8.018 26.631 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.024 3.976 14 N -0.392 5.392 15 C 0.399 3.601 16 O -0.473 6.473 17 N -0.408 5.408 18 C 0.030 3.970 19 C -0.113 4.113 20 C -0.202 4.202 21 C -0.145 4.145 22 C -0.197 4.197 23 C -0.075 4.075 24 N -0.312 5.312 25 C -0.062 4.062 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.228 0.772 38 H 0.227 0.773 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.159 0.841 51 H 0.094 0.906 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.136 6.659 26.550 27.850 hybrid contribution 0.287 1.336 -0.939 1.658 sum -4.849 7.995 25.611 27.265 Atomic orbital electron populations 1.21750 0.95305 1.01145 1.00124 1.20907 0.95454 0.95825 0.95053 1.21752 1.00515 0.95947 1.00111 1.19098 0.96384 0.95266 0.89471 1.21219 1.31063 1.11999 0.90501 0.92217 1.25023 0.95363 0.95109 0.99108 1.69975 1.37058 1.23022 1.23309 0.86592 0.78580 0.79666 0.83464 1.19820 1.21166 1.21147 1.21479 0.98610 0.95637 0.81907 1.45366 1.56050 1.33222 1.04588 1.16017 0.80504 0.83002 0.80595 1.90915 1.42789 1.27575 1.86026 1.45144 1.57456 1.33230 1.04939 1.21077 0.99548 0.96800 0.79623 1.21539 0.97958 0.96286 0.95468 1.21922 1.01658 0.94933 1.01692 1.21536 1.00747 0.99531 0.92639 1.22279 0.97587 1.00573 0.99280 1.22048 0.93469 1.01393 0.90597 1.60672 1.61585 1.06261 1.02716 1.22092 0.89971 0.98794 0.95389 0.95317 0.91504 0.93366 0.93397 0.91501 0.95343 0.96318 0.96293 0.93109 0.92092 0.92052 0.77248 0.77332 0.91686 0.91752 0.92285 0.92428 0.92038 0.91380 0.91469 0.91666 0.91318 0.90795 0.90849 0.84118 0.90603 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.52 7.65 -34.44 -0.26 -13.79 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.15 2.65 4.56 -4.04 -0.02 2.63 16 14 N -0.74 -10.82 4.96 -65.22 -0.32 -11.14 16 15 C 0.70 10.74 8.57 -86.92 -0.74 10.00 16 16 O -0.59 -11.83 16.34 5.29 0.09 -11.75 16 17 N -0.75 -8.00 4.97 -65.22 -0.32 -8.33 16 18 C 0.15 1.49 4.57 -4.04 -0.02 1.47 16 19 C -0.11 -0.73 0.53 -154.43 -0.08 -0.81 16 20 C -0.14 -0.87 7.70 37.16 0.29 -0.59 16 21 C -0.11 -0.65 4.79 -26.61 -0.13 -0.78 16 22 C -0.16 -0.80 5.73 -26.65 -0.15 -0.96 16 23 C 0.05 0.30 6.55 -3.83 -0.03 0.28 16 24 N -0.68 -4.41 6.80 -113.82 -0.77 -5.18 16 25 C 0.07 0.46 5.15 -3.84 -0.02 0.44 16 26 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 31 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.39 4.80 6.18 -40.82 -0.25 4.55 16 38 H 0.39 3.20 6.19 -40.82 -0.25 2.95 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.36 6.87 -51.93 -0.36 0.00 16 42 H 0.06 0.29 5.13 -51.93 -0.27 0.03 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.33 6.58 -51.93 -0.34 -0.01 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.34 1.89 7.15 -39.29 -0.28 1.61 16 51 H 0.08 0.52 6.89 -51.93 -0.36 0.17 16 52 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -31.55 387.21 -9.93 -41.47 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -9.28 Total: 3.79 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.86 Total: -5.16 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.69 Total: -50.40 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.55 -9.93 -41.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418195292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.508 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds