Wall clock time and date at job start Tue Mar 31 2020 09:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47080 * 119.99899 * 9 7 5 12 12 H 1.48502 * 109.47342 * 239.99982 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21583 * 120.00270 * 359.72083 * 15 14 13 17 17 N 1.34775 * 119.99585 * 179.72218 * 15 14 13 18 18 C 1.46507 * 119.99876 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46968 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.50162 * 299.91898 * 19 18 17 21 21 C 1.53120 * 109.50176 * 179.80744 * 19 18 17 22 22 C 1.53116 * 109.16280 * 182.40514 * 21 19 18 23 23 C 1.53032 * 109.27932 * 57.65016 * 22 21 19 24 24 N 1.46856 * 109.52359 * 300.82356 * 23 22 21 25 25 C 1.46842 * 111.19508 * 61.74200 * 24 23 22 26 26 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 27 27 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 28 28 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 31 31 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 32 32 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 34 34 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 35 35 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 36 36 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 37 37 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 38 38 H 0.97000 * 120.00523 * 0.02562 * 17 15 14 39 39 H 1.08998 * 109.47039 * 300.00042 * 18 17 15 40 40 H 1.08994 * 109.46660 * 60.00264 * 18 17 15 41 41 H 1.09001 * 109.47069 * 60.00583 * 20 19 18 42 42 H 1.09003 * 109.47031 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.47390 * 300.00427 * 20 19 18 44 44 H 1.09008 * 109.52122 * 302.30767 * 21 19 18 45 45 H 1.08997 * 109.52515 * 62.49378 * 21 19 18 46 46 H 1.09002 * 109.50063 * 297.71196 * 22 21 19 47 47 H 1.08998 * 109.53568 * 177.61390 * 22 21 19 48 48 H 1.09003 * 109.46400 * 180.81091 * 23 22 21 49 49 H 1.09002 * 109.45420 * 60.83207 * 23 22 21 50 50 H 1.00901 * 110.99896 * 297.64408 * 24 23 22 51 51 H 1.09002 * 109.46201 * 178.24073 * 25 24 23 52 52 H 1.08997 * 109.45941 * 58.27133 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4247 1.5663 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5808 -1.4763 3.7812 17 7 1.4372 0.1510 4.7699 18 6 1.7956 -0.3462 6.1006 19 6 1.1665 0.5523 7.1673 20 6 1.6862 1.9818 7.0022 21 6 1.5368 0.0305 8.5584 22 6 0.8546 0.8990 9.6190 23 6 -0.6587 0.8775 9.3926 24 7 -0.9612 1.3865 8.0487 25 6 -0.3558 0.5409 7.0120 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2494 33 1 1.6766 -1.7490 -1.2492 34 1 2.8594 -1.8841 -4.7335 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 0.9942 0.7584 2.3564 38 1 0.8792 0.9394 4.6809 39 1 1.4258 -1.3646 6.2197 40 1 2.8799 -0.3381 6.2115 41 1 1.4206 2.3529 6.0123 42 1 1.2381 2.6214 7.7626 43 1 2.7704 1.9896 7.1143 44 1 1.2010 -1.0015 8.6616 45 1 2.6178 0.0775 8.6893 46 1 1.2198 1.9230 9.5406 47 1 1.0798 0.5072 10.6108 48 1 -1.1463 1.5066 10.1374 49 1 -1.0251 -0.1449 9.4847 50 1 -0.6658 2.3463 7.9506 51 1 -0.6234 0.9253 6.0278 52 1 -0.7238 -0.4799 7.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418195292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:07 Heat of formation + Delta-G solvation = -82.012187 kcal Electronic energy + Delta-G solvation = -26750.338196 eV Core-core repulsion = 23168.446616 eV Total energy + Delta-G solvation = -3581.891579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44261 -40.43703 -38.73023 -36.13675 -35.22171 -34.02673 -33.15642 -32.14848 -29.12730 -28.26637 -27.93790 -27.76803 -26.44625 -24.79157 -24.59938 -22.57107 -21.79403 -20.21653 -19.81232 -19.01282 -18.35765 -17.25955 -16.95154 -16.77155 -16.49198 -16.07371 -15.76997 -15.61934 -15.38692 -15.22302 -14.90990 -14.59335 -14.33550 -14.16171 -14.06134 -13.92340 -13.72997 -13.38767 -13.19285 -12.87453 -12.68584 -12.57023 -12.52007 -12.41500 -12.32547 -12.21598 -12.20762 -12.04252 -11.93186 -11.51877 -11.47821 -11.32649 -11.28586 -10.95987 -10.82729 -10.51077 -10.36541 -9.72808 -9.23000 -8.12786 -6.20456 1.42663 1.43590 1.55380 1.73774 2.18285 2.45290 3.21729 3.34092 3.35705 3.65417 3.73608 3.80434 3.99911 4.11183 4.11712 4.24991 4.25685 4.30616 4.51765 4.54363 4.63483 4.70030 4.72592 4.75733 4.78605 4.83169 4.89405 4.99141 4.99591 5.02447 5.08850 5.11865 5.13430 5.14725 5.25022 5.27457 5.42275 5.43220 5.49247 5.52209 5.52289 5.56105 5.61114 5.82646 5.91548 6.01573 6.09395 6.32418 6.53280 6.94877 7.13101 7.47184 7.61447 8.99973 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.034344 B = 0.002235 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.076668 B =12522.657387 C =12867.415909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.038 3.962 5 C -0.510 4.510 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.162 3.838 14 N -0.723 5.723 15 C 0.697 3.303 16 O -0.643 6.643 17 N -0.727 5.727 18 C 0.155 3.845 19 C -0.096 4.096 20 C -0.143 4.143 21 C -0.108 4.108 22 C -0.151 4.151 23 C 0.054 3.946 24 N -0.689 5.689 25 C 0.071 3.929 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.070 0.930 32 H -0.014 1.014 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.410 0.590 38 H 0.409 0.591 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.065 0.935 50 H 0.348 0.652 51 H 0.079 0.921 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.006 10.943 28.097 30.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.205 4.205 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.037 3.963 14 N -0.380 5.380 15 C 0.396 3.604 16 O -0.525 6.525 17 N -0.384 5.384 18 C 0.030 3.970 19 C -0.099 4.099 20 C -0.200 4.200 21 C -0.146 4.146 22 C -0.190 4.190 23 C -0.075 4.075 24 N -0.318 5.318 25 C -0.059 4.059 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.247 0.753 38 H 0.247 0.753 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.167 0.833 51 H 0.097 0.903 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.958 9.658 28.056 30.477 hybrid contribution 0.854 0.382 -1.305 1.606 sum -6.103 10.040 26.751 29.217 Atomic orbital electron populations 1.21685 0.93527 1.00928 1.01644 1.20698 0.96734 0.96301 0.92599 1.21686 0.99853 0.94588 1.01646 1.18987 0.94291 0.94237 0.92402 1.21620 1.30242 1.11987 0.90981 0.90815 1.25974 0.95752 0.95921 1.02805 1.70132 1.38922 1.25002 1.23992 0.85475 0.78006 0.78820 0.79195 1.17930 1.21137 1.21131 1.21036 0.97359 0.94923 0.82985 1.44993 1.56101 1.33432 1.03456 1.16181 0.80153 0.82624 0.81398 1.90892 1.44995 1.29890 1.86722 1.44937 1.56457 1.32998 1.04043 1.21149 0.99050 0.97049 0.79742 1.21425 0.97727 0.96165 0.94551 1.21917 1.01353 0.94316 1.02451 1.21552 1.00840 0.99540 0.92685 1.22222 0.97030 1.00598 0.99116 1.22071 0.93823 1.01209 0.90435 1.60663 1.61635 1.06612 1.02883 1.22018 0.89741 0.98335 0.95842 0.91125 0.92536 0.94538 0.94534 0.92536 0.91121 0.99606 0.99607 0.93225 0.94049 0.94043 0.75281 0.75323 0.93039 0.92996 0.91900 0.90973 0.92624 0.92009 0.91591 0.91026 0.90606 0.89757 0.91614 0.83303 0.90286 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 2 C -0.06 -2.36 0.54 -52.18 -0.03 -2.39 16 3 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 4 C 0.04 1.97 4.04 29.85 0.12 2.09 16 5 C -0.51 -27.30 7.65 25.60 0.20 -27.10 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 7 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 8 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 9 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 13 C 0.16 5.90 4.56 86.38 0.39 6.29 16 14 N -0.72 -20.05 4.96 -478.53 -2.37 -22.42 16 15 C 0.70 20.79 8.57 179.05 1.53 22.33 16 16 O -0.64 -25.98 16.34 -3.98 -0.06 -26.05 16 17 N -0.73 -14.28 4.97 -478.53 -2.38 -16.66 16 18 C 0.16 2.87 4.57 86.38 0.39 3.26 16 19 C -0.10 -1.11 0.53 -52.13 -0.03 -1.14 16 20 C -0.14 -1.35 7.70 71.98 0.55 -0.80 16 21 C -0.11 -1.17 4.79 30.67 0.15 -1.03 16 22 C -0.15 -1.20 5.73 30.64 0.18 -1.02 16 23 C 0.05 0.49 6.55 86.32 0.57 1.05 16 24 N -0.69 -7.22 6.80 -514.01 -3.49 -10.72 16 25 C 0.07 0.84 5.15 86.32 0.44 1.28 16 26 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 27 H 0.06 2.01 6.62 -2.38 -0.02 1.99 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 2.00 6.62 -2.38 -0.02 1.98 16 31 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 32 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.41 8.52 6.18 -92.71 -0.57 7.95 16 38 H 0.41 5.43 6.19 -92.71 -0.57 4.85 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 0.55 6.87 -2.39 -0.02 0.54 16 42 H 0.07 0.50 5.13 -2.39 -0.01 0.49 16 43 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.51 6.58 -2.39 -0.02 0.49 16 47 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.35 2.80 7.15 -89.69 -0.64 2.16 16 51 H 0.08 0.87 6.89 -2.39 -0.02 0.86 16 52 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -71.22 387.21 -0.78 -72.00 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.87 Total: 19.31 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 6.09 Total: -4.00 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -7.96 Total: -106.92 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.05 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -71.22 -0.78 -72.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418195292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.008 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds