Wall clock time and date at job start Tue Mar 31 2020 10:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47288 * 2 1 4 4 H 1.08994 * 109.46639 * 304.26709 * 3 2 1 5 5 C 1.53040 * 109.46177 * 64.24071 * 3 2 1 6 6 C 1.53120 * 109.27946 * 179.19305 * 5 3 2 7 7 C 1.53120 * 109.16207 * 302.34896 * 6 5 3 8 8 C 1.53038 * 109.27819 * 57.65162 * 7 6 5 9 9 N 1.46846 * 109.52451 * 300.81994 * 8 7 6 10 10 C 1.46894 * 110.99939 * 185.84304 * 9 8 7 11 11 C 1.53001 * 109.47416 * 51.61045 * 10 9 8 12 12 N 1.46498 * 109.47194 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00371 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00354 * 179.97438 * 13 12 11 16 16 H 1.08999 * 109.47165 * 40.01013 * 15 13 12 17 17 N 1.46905 * 109.47232 * 160.00434 * 15 13 12 18 18 C 1.53001 * 109.47666 * 280.00418 * 15 13 12 19 19 C 1.52998 * 109.47280 * 175.00046 * 18 15 13 20 20 C 1.50702 * 109.46982 * 180.02562 * 19 18 15 21 21 H 1.08005 * 119.99724 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99974 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00433 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 120.00080 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47068 * 89.99957 * 24 22 20 26 26 H 1.48496 * 109.47015 * 210.00211 * 24 22 20 27 27 H 1.48500 * 109.46953 * 330.00035 * 24 22 20 28 28 H 1.08993 * 109.47231 * 54.81846 * 1 2 3 29 29 H 1.09000 * 109.46565 * 294.82445 * 1 2 3 30 30 H 1.09000 * 109.47258 * 174.82510 * 1 2 3 31 31 H 1.09002 * 109.47386 * 120.00435 * 2 1 3 32 32 H 1.08998 * 109.46881 * 240.00036 * 2 1 3 33 33 H 1.08992 * 109.50294 * 299.13740 * 5 3 2 34 34 H 1.09002 * 109.50168 * 59.25583 * 5 3 2 35 35 H 1.08998 * 109.52014 * 62.25242 * 6 5 3 36 36 H 1.08997 * 109.52564 * 182.37643 * 6 5 3 37 37 H 1.09000 * 109.50320 * 177.59714 * 7 6 5 38 38 H 1.09001 * 109.49930 * 297.70906 * 7 6 5 39 39 H 1.08995 * 109.46315 * 60.84376 * 8 7 6 40 40 H 1.09005 * 109.46157 * 180.80632 * 8 7 6 41 41 H 1.09002 * 109.47124 * 171.61595 * 10 9 8 42 42 H 1.09003 * 109.47265 * 291.60949 * 10 9 8 43 43 H 1.08992 * 109.47027 * 299.99968 * 11 10 9 44 44 H 1.09000 * 109.47005 * 60.00274 * 11 10 9 45 45 H 0.97003 * 119.99801 * 0.02562 * 12 11 10 46 46 H 1.00907 * 110.99861 * 296.05048 * 17 15 13 47 47 H 1.00900 * 111.00092 * 59.99895 * 17 15 13 48 48 H 1.09001 * 109.46908 * 294.99898 * 18 15 13 49 49 H 1.09000 * 109.46708 * 55.00086 * 18 15 13 50 50 H 1.09001 * 109.47029 * 299.99778 * 19 18 15 51 51 H 1.08991 * 109.47238 * 60.00110 * 19 18 15 52 52 H 0.96998 * 120.00862 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6156 1.9778 -0.8493 5 6 1.6188 2.1322 1.2996 6 6 2.1485 3.5689 1.3041 7 6 3.6713 3.5436 1.1463 8 6 4.0330 2.8129 -0.1489 9 7 3.5049 1.4435 -0.1037 10 6 3.9507 0.6686 -1.2692 11 6 5.4708 0.7787 -1.4038 12 7 5.9155 0.0054 -2.5659 13 6 7.2246 -0.0430 -2.8823 14 8 8.0347 0.5533 -2.2047 15 6 7.6821 -0.8390 -4.0773 16 1 6.9746 -0.7049 -4.8956 17 7 9.0103 -0.3724 -4.4972 18 6 7.7565 -2.3211 -3.7050 19 6 8.0997 -3.1429 -4.9491 20 6 8.1724 -4.6028 -4.5824 21 1 7.9922 -4.9133 -3.5637 22 6 8.4688 -5.5420 -5.5472 23 7 8.5328 -6.8160 -5.2272 24 14 8.7798 -5.0049 -7.3092 25 1 10.2262 -4.7230 -7.4928 26 1 8.3647 -6.0874 -8.2371 27 1 7.9956 -3.7774 -7.5982 28 1 -0.3633 0.5921 -0.8399 29 1 -0.3632 0.4315 0.9327 30 1 -0.3634 -1.0235 -0.0927 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 0.5311 2.1451 1.3687 34 1 2.0317 1.5895 2.1500 35 1 1.7056 4.1229 0.4764 36 1 1.8869 4.0506 2.2461 37 1 4.0499 4.5649 1.1059 38 1 4.1164 3.0232 1.9943 39 1 3.5992 3.3417 -0.9975 40 1 5.1172 2.7807 -0.2570 41 1 3.6723 -0.3771 -1.1385 42 1 3.4770 1.0608 -2.1692 43 1 5.7492 1.8243 -1.5346 44 1 5.9446 0.3864 -0.5039 45 1 5.2675 -0.4712 -3.1081 46 1 8.9746 0.5865 -4.8096 47 1 9.6847 -0.4860 -3.7554 48 1 8.5277 -2.4674 -2.9487 49 1 6.7938 -2.6451 -3.3097 50 1 7.3285 -2.9966 -5.7053 51 1 9.0624 -2.8189 -5.3443 52 1 8.7417 -7.4768 -5.9059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424141679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:16 Heat of formation + Delta-G solvation = -60.420387 kcal Electronic energy + Delta-G solvation = -26287.733623 eV Core-core repulsion = 22706.778335 eV Total energy + Delta-G solvation = -3580.955289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17964 -39.56808 -35.87315 -35.18144 -34.40419 -33.46065 -32.74850 -30.48797 -29.60935 -29.03249 -26.63557 -24.94953 -24.59235 -23.27885 -21.59437 -21.22594 -20.49520 -20.07442 -19.77840 -17.25069 -16.86304 -16.54484 -15.91632 -15.82168 -15.45474 -15.23160 -15.11629 -14.55532 -14.45707 -14.14587 -14.02248 -13.77628 -13.51249 -13.34445 -13.17141 -13.01552 -12.60337 -12.35698 -12.16779 -11.98712 -11.89863 -11.87127 -11.67432 -11.45416 -11.12270 -11.03298 -10.98398 -10.87028 -10.57636 -10.44842 -10.34780 -9.99931 -9.70778 -9.58779 -9.11232 -9.08878 -8.67436 -8.50815 -8.39012 -5.98572 -3.96157 2.71516 3.00715 3.38036 3.44438 3.49736 3.67146 4.33279 4.35452 4.47372 4.51893 4.58761 4.72697 4.78964 4.79482 4.85657 4.95462 4.97980 5.05215 5.08007 5.16399 5.25358 5.31382 5.32879 5.35670 5.40428 5.47828 5.54203 5.57579 5.65183 5.68897 5.69310 5.73105 5.77271 5.79242 5.88640 5.91535 6.04539 6.29598 6.36798 6.49158 6.71678 6.75926 6.88665 7.25059 7.39174 7.50295 7.58790 7.66940 7.87233 8.25502 8.59010 9.06262 9.64405 11.14910 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.002444 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.313629 B =11451.545249 C =12585.054255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.088 3.912 4 H 0.040 0.960 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.117 4.117 8 C 0.047 3.953 9 N -0.529 5.529 10 C 0.042 3.958 11 C 0.116 3.884 12 N -0.730 5.730 13 C 0.485 3.515 14 O -0.552 6.552 15 C 0.075 3.925 16 H 0.097 0.903 17 N -0.811 5.811 18 C -0.087 4.087 19 C -0.004 4.004 20 C -0.521 4.521 21 H 0.069 0.931 22 C 0.065 3.935 23 N -0.907 5.907 24 Si 0.883 3.117 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.265 1.265 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.402 0.598 46 H 0.335 0.665 47 H 0.350 0.650 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.012 0.988 51 H 0.029 0.971 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.742 21.945 10.863 29.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.020 4.020 4 H 0.058 0.942 5 C -0.150 4.150 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.081 4.081 9 N -0.254 5.254 10 C -0.086 4.086 11 C -0.008 4.008 12 N -0.383 5.383 13 C 0.270 3.730 14 O -0.429 6.429 15 C -0.041 4.041 16 H 0.115 0.885 17 N -0.339 5.339 18 C -0.125 4.125 19 C -0.042 4.042 20 C -0.559 4.559 21 H 0.087 0.913 22 C -0.136 4.136 23 N -0.546 5.546 24 Si 0.711 3.289 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.189 1.189 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.237 0.763 46 H 0.146 0.854 47 H 0.164 0.836 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.031 0.969 51 H 0.048 0.952 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.957 21.404 11.141 28.929 hybrid contribution -0.621 1.019 -1.090 1.616 sum -16.579 22.424 10.052 29.643 Atomic orbital electron populations 1.21793 0.95463 1.01923 1.01758 1.21683 0.95759 0.95642 1.03080 1.21683 0.86575 0.96355 0.97418 0.94230 1.21670 1.00268 0.95474 0.97569 1.21598 0.95913 0.96845 1.01667 1.21587 0.95983 0.99843 0.98068 1.22244 1.00648 0.88066 0.97123 1.61887 1.09876 1.13437 1.40213 1.22318 0.94468 0.99989 0.91820 1.21378 0.93547 0.96255 0.89605 1.46076 1.08795 1.52711 1.30755 1.22609 0.81750 0.80905 0.87710 1.90657 1.53110 1.46027 1.53132 1.21860 0.92442 0.96950 0.92816 0.88469 1.59041 1.05954 1.26441 1.42478 1.21467 1.01432 0.88569 1.01069 1.19484 0.97129 0.94892 0.92670 1.21184 1.47715 0.89671 0.97304 0.91294 1.25021 0.94816 0.94773 0.98959 1.69923 1.49835 1.00725 1.34106 0.86728 0.79075 0.78324 0.84823 1.20291 1.21741 1.18912 0.92921 0.92484 0.92385 0.90880 0.91533 0.91330 0.90935 0.92443 0.91773 0.91560 0.90909 0.94967 0.89902 0.89277 0.94334 0.91658 0.90684 0.76348 0.85368 0.83580 0.92206 0.92162 0.96934 0.95242 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.52 37.16 0.35 -0.57 16 2 C -0.12 -0.89 5.13 -26.73 -0.14 -1.03 16 3 C 0.09 0.66 1.92 -67.72 -0.13 0.53 16 4 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 5 C -0.11 -0.75 5.09 -26.65 -0.14 -0.88 16 6 C -0.12 -0.78 6.00 -26.61 -0.16 -0.94 16 7 C -0.12 -0.83 6.09 -26.65 -0.16 -0.99 16 8 C 0.05 0.38 5.03 -3.83 -0.02 0.36 16 9 N -0.53 -4.57 4.60 -226.69 -1.04 -5.61 16 10 C 0.04 0.37 4.56 -3.83 -0.02 0.35 16 11 C 0.12 1.27 5.17 -4.04 -0.02 1.25 16 12 N -0.73 -8.65 5.56 -60.30 -0.33 -8.98 16 13 C 0.48 7.31 7.07 -10.99 -0.08 7.23 16 14 O -0.55 -9.95 16.25 5.55 0.09 -9.86 16 15 C 0.08 1.18 3.15 -68.86 -0.22 0.96 16 16 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 17 N -0.81 -12.73 8.44 -5.65 -0.05 -12.77 16 18 C -0.09 -1.68 4.78 -26.73 -0.13 -1.80 16 19 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 20 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 21 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 22 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 23 N -0.91 -28.22 13.96 55.43 0.77 -27.45 16 24 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 6.82 -51.93 -0.35 -0.04 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.50 6.17 -51.93 -0.32 0.18 16 33 H 0.07 0.39 6.70 -51.93 -0.35 0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 0.73 5.84 -51.93 -0.30 0.43 16 41 H 0.09 0.77 6.38 -51.93 -0.33 0.44 16 42 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.74 6.19 -51.93 -0.32 0.42 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16 46 H 0.33 4.51 9.06 -39.29 -0.36 4.15 16 47 H 0.35 5.65 8.58 -39.29 -0.34 5.32 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 51 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 52 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -32.86 396.60 -10.34 -43.20 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -9.69 Total: 7.25 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.39 Total: -9.13 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.65 Total: -54.82 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.86 -10.34 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424141679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.222 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds