Wall clock time and date at job start Tue Mar 31 2020 10:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47288 * 2 1 4 4 H 1.08994 * 109.46639 * 304.26709 * 3 2 1 5 5 C 1.53040 * 109.46177 * 64.24071 * 3 2 1 6 6 C 1.53120 * 109.27946 * 179.19305 * 5 3 2 7 7 C 1.53120 * 109.16207 * 302.34896 * 6 5 3 8 8 C 1.53038 * 109.27819 * 57.65162 * 7 6 5 9 9 N 1.46846 * 109.52451 * 300.81994 * 8 7 6 10 10 C 1.46894 * 110.99939 * 185.84304 * 9 8 7 11 11 C 1.53001 * 109.47416 * 51.61045 * 10 9 8 12 12 N 1.46498 * 109.47194 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00371 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00354 * 179.97438 * 13 12 11 16 16 H 1.08999 * 109.47165 * 40.01013 * 15 13 12 17 17 N 1.46905 * 109.47232 * 160.00434 * 15 13 12 18 18 C 1.53001 * 109.47666 * 280.00418 * 15 13 12 19 19 C 1.52998 * 109.47280 * 175.00046 * 18 15 13 20 20 C 1.50702 * 109.46982 * 180.02562 * 19 18 15 21 21 H 1.08005 * 119.99724 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99974 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00433 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 120.00080 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47068 * 89.99957 * 24 22 20 26 26 H 1.48496 * 109.47015 * 210.00211 * 24 22 20 27 27 H 1.48500 * 109.46953 * 330.00035 * 24 22 20 28 28 H 1.08993 * 109.47231 * 54.81846 * 1 2 3 29 29 H 1.09000 * 109.46565 * 294.82445 * 1 2 3 30 30 H 1.09000 * 109.47258 * 174.82510 * 1 2 3 31 31 H 1.09002 * 109.47386 * 120.00435 * 2 1 3 32 32 H 1.08998 * 109.46881 * 240.00036 * 2 1 3 33 33 H 1.08992 * 109.50294 * 299.13740 * 5 3 2 34 34 H 1.09002 * 109.50168 * 59.25583 * 5 3 2 35 35 H 1.08998 * 109.52014 * 62.25242 * 6 5 3 36 36 H 1.08997 * 109.52564 * 182.37643 * 6 5 3 37 37 H 1.09000 * 109.50320 * 177.59714 * 7 6 5 38 38 H 1.09001 * 109.49930 * 297.70906 * 7 6 5 39 39 H 1.08995 * 109.46315 * 60.84376 * 8 7 6 40 40 H 1.09005 * 109.46157 * 180.80632 * 8 7 6 41 41 H 1.09002 * 109.47124 * 171.61595 * 10 9 8 42 42 H 1.09003 * 109.47265 * 291.60949 * 10 9 8 43 43 H 1.08992 * 109.47027 * 299.99968 * 11 10 9 44 44 H 1.09000 * 109.47005 * 60.00274 * 11 10 9 45 45 H 0.97003 * 119.99801 * 0.02562 * 12 11 10 46 46 H 1.00907 * 110.99861 * 296.05048 * 17 15 13 47 47 H 1.00900 * 111.00092 * 59.99895 * 17 15 13 48 48 H 1.09001 * 109.46908 * 294.99898 * 18 15 13 49 49 H 1.09000 * 109.46708 * 55.00086 * 18 15 13 50 50 H 1.09001 * 109.47029 * 299.99778 * 19 18 15 51 51 H 1.08991 * 109.47238 * 60.00110 * 19 18 15 52 52 H 0.96998 * 120.00862 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6156 1.9778 -0.8493 5 6 1.6188 2.1322 1.2996 6 6 2.1485 3.5689 1.3041 7 6 3.6713 3.5436 1.1463 8 6 4.0330 2.8129 -0.1489 9 7 3.5049 1.4435 -0.1037 10 6 3.9507 0.6686 -1.2692 11 6 5.4708 0.7787 -1.4038 12 7 5.9155 0.0054 -2.5659 13 6 7.2246 -0.0430 -2.8823 14 8 8.0347 0.5533 -2.2047 15 6 7.6821 -0.8390 -4.0773 16 1 6.9746 -0.7049 -4.8956 17 7 9.0103 -0.3724 -4.4972 18 6 7.7565 -2.3211 -3.7050 19 6 8.0997 -3.1429 -4.9491 20 6 8.1724 -4.6028 -4.5824 21 1 7.9922 -4.9133 -3.5637 22 6 8.4688 -5.5420 -5.5472 23 7 8.5328 -6.8160 -5.2272 24 14 8.7798 -5.0049 -7.3092 25 1 10.2262 -4.7230 -7.4928 26 1 8.3647 -6.0874 -8.2371 27 1 7.9956 -3.7774 -7.5982 28 1 -0.3633 0.5921 -0.8399 29 1 -0.3632 0.4315 0.9327 30 1 -0.3634 -1.0235 -0.0927 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 0.5311 2.1451 1.3687 34 1 2.0317 1.5895 2.1500 35 1 1.7056 4.1229 0.4764 36 1 1.8869 4.0506 2.2461 37 1 4.0499 4.5649 1.1059 38 1 4.1164 3.0232 1.9943 39 1 3.5992 3.3417 -0.9975 40 1 5.1172 2.7807 -0.2570 41 1 3.6723 -0.3771 -1.1385 42 1 3.4770 1.0608 -2.1692 43 1 5.7492 1.8243 -1.5346 44 1 5.9446 0.3864 -0.5039 45 1 5.2675 -0.4712 -3.1081 46 1 8.9746 0.5865 -4.8096 47 1 9.6847 -0.4860 -3.7554 48 1 8.5277 -2.4674 -2.9487 49 1 6.7938 -2.6451 -3.3097 50 1 7.3285 -2.9966 -5.7053 51 1 9.0624 -2.8189 -5.3443 52 1 8.7417 -7.4768 -5.9059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424141679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:15 Heat of formation + Delta-G solvation = -84.959537 kcal Electronic energy + Delta-G solvation = -26288.797721 eV Core-core repulsion = 22706.778335 eV Total energy + Delta-G solvation = -3582.019386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16055 -40.43149 -37.03498 -36.45365 -34.95977 -34.77750 -34.25564 -32.27844 -30.16034 -29.97038 -28.17293 -25.86986 -25.27497 -24.57281 -22.44569 -22.16889 -21.74845 -21.17089 -20.59023 -18.97291 -18.22089 -17.65757 -17.06524 -16.75461 -16.32521 -16.23713 -16.03912 -15.73061 -15.52266 -15.13947 -15.08232 -14.83322 -14.68085 -14.44527 -14.10372 -13.96614 -13.79476 -13.60254 -13.52032 -12.83417 -12.76051 -12.74553 -12.53571 -12.50295 -12.45066 -12.02016 -11.94844 -11.79042 -11.69256 -11.60365 -11.59230 -11.28159 -11.17284 -11.14319 -10.97593 -10.70388 -10.15907 -9.68082 -9.32570 -8.23998 -6.27287 1.42296 1.43611 1.49399 1.56309 2.04590 2.42197 2.93308 3.12595 3.56259 3.67470 3.75802 3.83815 3.89288 3.93416 4.06370 4.10623 4.15886 4.27731 4.30794 4.34111 4.41759 4.45106 4.53818 4.64814 4.71691 4.72739 4.76580 4.83108 4.87795 4.89477 4.95163 5.01936 5.06137 5.15300 5.16157 5.17972 5.25789 5.32827 5.37012 5.40474 5.48854 5.51846 5.66674 5.73873 6.04971 6.06433 6.13592 6.33579 6.42940 6.53021 6.81483 7.12886 7.37198 8.92901 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.002444 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.313629 B =11451.545249 C =12585.054255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.089 3.911 4 H 0.040 0.960 5 C -0.110 4.110 6 C -0.120 4.120 7 C -0.116 4.116 8 C 0.047 3.953 9 N -0.540 5.540 10 C 0.051 3.949 11 C 0.122 3.878 12 N -0.715 5.715 13 C 0.487 3.513 14 O -0.584 6.584 15 C 0.085 3.915 16 H 0.122 0.878 17 N -0.819 5.819 18 C -0.079 4.079 19 C 0.003 3.997 20 C -0.531 4.531 21 H 0.028 0.972 22 C 0.001 3.999 23 N -0.956 5.956 24 Si 0.955 3.045 25 H -0.273 1.273 26 H -0.287 1.287 27 H -0.240 1.240 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.415 0.585 46 H 0.349 0.651 47 H 0.346 0.654 48 H 0.038 0.962 49 H 0.067 0.933 50 H 0.025 0.975 51 H 0.027 0.973 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.235 24.024 9.509 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.019 4.019 4 H 0.058 0.942 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.081 4.081 9 N -0.265 5.265 10 C -0.077 4.077 11 C -0.002 4.002 12 N -0.368 5.368 13 C 0.272 3.728 14 O -0.464 6.464 15 C -0.031 4.031 16 H 0.140 0.860 17 N -0.348 5.348 18 C -0.118 4.118 19 C -0.035 4.035 20 C -0.569 4.569 21 H 0.046 0.954 22 C -0.195 4.195 23 N -0.597 5.597 24 Si 0.778 3.222 25 H -0.198 1.198 26 H -0.213 1.213 27 H -0.163 1.163 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.252 0.748 46 H 0.162 0.838 47 H 0.159 0.841 48 H 0.057 0.943 49 H 0.085 0.915 50 H 0.044 0.956 51 H 0.045 0.955 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.498 23.505 9.790 30.895 hybrid contribution -0.174 0.331 -0.552 0.666 sum -17.671 23.836 9.238 31.077 Atomic orbital electron populations 1.21767 0.94466 1.02108 1.02275 1.21664 0.96619 0.95335 1.02405 1.21717 0.85724 0.96584 0.97868 0.94194 1.21665 1.00988 0.95472 0.96665 1.21590 0.95155 0.96703 1.02332 1.21582 0.96685 1.00065 0.97041 1.22239 1.00004 0.88007 0.97831 1.61903 1.10765 1.13724 1.40152 1.22210 0.92715 1.00282 0.92486 1.21347 0.94915 0.95726 0.88216 1.45964 1.08092 1.52008 1.30751 1.22426 0.82425 0.80680 0.87226 1.90651 1.54188 1.47556 1.53983 1.21677 0.93236 0.94323 0.93814 0.85996 1.59033 1.05786 1.27632 1.42302 1.21262 1.01019 0.90819 0.98671 1.19371 0.97350 0.92106 0.94663 1.21571 1.47032 0.92682 0.95593 0.95399 1.26030 0.94627 0.94642 1.04211 1.70083 1.51437 1.02250 1.35907 0.85592 0.79316 0.78793 0.78476 1.19832 1.21345 1.16312 0.92536 0.91836 0.92371 0.91858 0.91893 0.90096 0.91860 0.92051 0.90835 0.90616 0.91888 0.94717 0.90955 0.89154 0.93235 0.91771 0.92728 0.74826 0.83788 0.84096 0.94287 0.91482 0.95647 0.95470 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.52 71.98 0.69 -0.89 16 2 C -0.12 -1.63 5.13 30.59 0.16 -1.47 16 3 C 0.09 1.22 1.92 44.94 0.09 1.30 16 4 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 5 C -0.11 -1.31 5.09 30.65 0.16 -1.15 16 6 C -0.12 -1.33 6.00 30.67 0.18 -1.14 16 7 C -0.12 -1.52 6.09 30.65 0.19 -1.33 16 8 C 0.05 0.72 5.03 86.33 0.43 1.16 16 9 N -0.54 -8.82 4.60 -871.13 -4.01 -12.82 16 10 C 0.05 0.83 4.56 86.30 0.39 1.22 16 11 C 0.12 2.56 5.17 86.38 0.45 3.00 16 12 N -0.72 -15.79 5.56 -463.08 -2.57 -18.36 16 13 C 0.49 14.02 7.07 87.66 0.62 14.64 16 14 O -0.58 -20.70 16.25 -3.05 -0.05 -20.75 16 15 C 0.09 2.49 3.15 44.17 0.14 2.63 16 16 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 17 N -0.82 -24.20 8.44 -171.80 -1.45 -25.65 16 18 C -0.08 -2.98 4.78 30.59 0.15 -2.84 16 19 C 0.00 0.12 3.93 29.85 0.12 0.24 16 20 C -0.53 -30.69 9.66 25.60 0.25 -30.44 16 21 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 22 C 0.00 0.06 5.47 84.65 0.46 0.52 16 23 N -0.96 -60.71 13.96 21.44 0.30 -60.41 16 24 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 27 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.59 6.82 -2.39 -0.02 0.57 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.87 6.17 -2.39 -0.01 0.86 16 33 H 0.08 0.76 6.70 -2.39 -0.02 0.75 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.07 1.26 5.84 -2.38 -0.01 1.24 16 41 H 0.09 1.46 6.38 -2.39 -0.02 1.44 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 1.40 6.19 -2.39 -0.01 1.38 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.42 7.09 8.47 -92.71 -0.79 6.31 16 46 H 0.35 8.63 9.06 -89.69 -0.81 7.82 16 47 H 0.35 10.87 8.58 -89.69 -0.77 10.10 16 48 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.03 1.10 7.20 -2.39 -0.02 1.09 16 51 H 0.03 1.26 7.18 -2.39 -0.02 1.24 16 52 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -71.38 396.60 -2.95 -74.33 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -1.51 Total: 31.55 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.46 Total: -14.55 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -7.73 Total: -117.24 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.75 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -71.38 -2.95 -74.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424141679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.631 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds