Wall clock time and date at job start Tue Mar 31 2020 10:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08991 * 109.45229 * 2 1 4 4 C 1.53042 * 109.45990 * 240.02664 * 2 1 3 5 5 C 1.53123 * 109.27933 * 299.16418 * 4 2 1 6 6 C 1.53113 * 109.15950 * 302.34804 * 5 4 2 7 7 C 1.53031 * 109.28100 * 57.65565 * 6 5 4 8 8 H 1.08996 * 109.46874 * 60.83424 * 7 6 5 9 9 C 1.53007 * 109.46329 * 180.80377 * 7 6 5 10 10 N 1.46842 * 109.45908 * 119.97638 * 2 1 3 11 11 C 1.46894 * 111.00156 * 294.17092 * 10 2 1 12 12 C 1.52995 * 109.47304 * 292.68939 * 11 10 2 13 13 N 1.46502 * 109.47184 * 179.97438 * 12 11 10 14 14 C 1.34784 * 119.99997 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99865 * 0.02562 * 14 13 12 16 16 C 1.50693 * 119.99797 * 180.02562 * 14 13 12 17 17 H 1.08995 * 109.47686 * 39.99826 * 16 14 13 18 18 N 1.46904 * 109.46999 * 160.00224 * 16 14 13 19 19 C 1.53007 * 109.46989 * 279.99801 * 16 14 13 20 20 C 1.53005 * 109.46734 * 175.00100 * 19 16 14 21 21 C 1.50703 * 109.46927 * 180.02562 * 20 19 16 22 22 H 1.08001 * 119.99634 * 359.97438 * 21 20 19 23 23 C 1.37870 * 120.00201 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00165 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99985 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47342 * 269.99881 * 25 23 21 27 27 H 1.48505 * 109.46928 * 149.99730 * 25 23 21 28 28 H 1.48495 * 109.47182 * 30.00072 * 25 23 21 29 29 H 1.08995 * 109.46681 * 300.02464 * 1 2 3 30 30 H 1.08999 * 109.46598 * 60.02474 * 1 2 3 31 31 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.50150 * 179.22527 * 4 2 1 33 33 H 1.08999 * 109.50268 * 59.10602 * 4 2 1 34 34 H 1.08999 * 109.52471 * 182.43903 * 5 4 2 35 35 H 1.08999 * 109.52007 * 62.25393 * 5 4 2 36 36 H 1.09004 * 109.50571 * 297.70789 * 6 5 4 37 37 H 1.08999 * 109.50372 * 177.59516 * 6 5 4 38 38 H 1.09004 * 109.46857 * 187.00794 * 9 7 6 39 39 H 1.08994 * 109.46798 * 307.01215 * 9 7 6 40 40 H 1.08995 * 109.46995 * 67.01380 * 9 7 6 41 41 H 1.09007 * 109.47429 * 172.69152 * 11 10 2 42 42 H 1.09003 * 109.47143 * 52.69140 * 11 10 2 43 43 H 1.09005 * 109.46920 * 60.00272 * 12 11 10 44 44 H 1.08998 * 109.47470 * 299.99799 * 12 11 10 45 45 H 0.97000 * 120.00250 * 0.02562 * 13 12 11 46 46 H 1.00897 * 111.00152 * 59.99662 * 18 16 14 47 47 H 1.00907 * 111.00057 * 183.95225 * 18 16 14 48 48 H 1.09000 * 109.46591 * 55.00765 * 19 16 14 49 49 H 1.08990 * 109.47214 * 295.00235 * 19 16 14 50 50 H 1.08994 * 109.47256 * 60.00572 * 20 19 16 51 51 H 1.09000 * 109.47306 * 299.99864 * 20 19 16 52 52 H 0.97003 * 120.00070 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0400 -0.7209 -1.2500 5 6 1.5443 -2.1696 -1.2357 6 6 2.0269 -2.8532 0.0466 7 6 1.5174 -2.0706 1.2589 8 1 0.4275 -2.0608 1.2531 9 6 2.0141 -2.7388 2.5426 10 7 2.0193 -0.6918 1.1993 11 6 1.6652 0.0505 2.4165 12 6 2.4370 1.3711 2.4512 13 7 2.0834 2.1116 3.6648 14 6 2.6446 3.3125 3.9090 15 8 3.4419 3.7802 3.1238 16 6 2.2813 4.0740 5.1576 17 1 2.1989 3.3810 5.9949 18 7 3.3237 5.0682 5.4456 19 6 0.9422 4.7846 4.9501 20 6 0.5126 5.4546 6.2569 21 6 -0.8066 6.1540 6.0527 22 1 -1.2899 6.1240 5.0874 23 6 -1.3958 6.8331 7.0979 24 7 -2.5468 7.4439 6.9196 25 14 -0.5587 6.8868 8.7670 26 1 -1.0130 5.7345 9.5860 27 1 -0.9109 8.1539 9.4568 28 1 0.9133 6.8150 8.5850 29 1 -0.3632 0.5142 0.8897 30 1 -0.3632 0.5135 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 3.1298 -0.7093 -1.2577 33 1 1.6638 -0.2164 -2.1400 34 1 1.9408 -2.6989 -2.1021 35 1 0.4548 -2.1821 -1.2673 36 1 3.1166 -2.8752 0.0593 37 1 1.6414 -3.8721 0.0831 38 1 1.5517 -2.2581 3.4048 39 1 1.7469 -3.7954 2.5290 40 1 3.0974 -2.6388 2.6085 41 1 1.9232 -0.5442 3.2928 42 1 0.5946 0.2552 2.4187 43 1 2.1790 1.9658 1.5749 44 1 3.5076 1.1664 2.4490 45 1 1.4455 1.7377 4.2926 46 1 3.4195 5.7227 4.6838 47 1 3.1360 5.5480 6.3132 48 1 0.1878 4.0575 4.6496 49 1 1.0487 5.5404 4.1722 50 1 1.2670 6.1817 6.5575 51 1 0.4061 4.6987 7.0349 52 1 -2.9612 7.9220 7.6549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424150995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:57 Heat of formation + Delta-G solvation = -78.077901 kcal Electronic energy + Delta-G solvation = -26652.758784 eV Core-core repulsion = 23071.037809 eV Total energy + Delta-G solvation = -3581.720976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.20022 -40.65014 -37.26046 -36.39102 -34.81111 -34.43232 -34.05032 -32.07776 -30.45641 -28.91129 -27.94141 -27.47649 -25.65374 -24.46382 -22.61334 -22.19831 -22.12253 -21.11783 -19.48401 -19.09153 -18.30676 -17.47465 -16.97710 -16.64260 -16.36543 -16.23602 -15.97771 -15.78934 -15.51133 -15.21290 -14.88797 -14.77543 -14.61626 -14.39870 -14.10704 -13.85806 -13.65247 -13.49167 -13.30298 -13.08478 -12.98368 -12.84347 -12.69462 -12.53393 -12.42711 -12.32638 -12.11095 -11.85667 -11.75591 -11.68896 -11.41099 -11.40916 -11.08998 -11.05482 -10.78485 -10.77353 -10.09499 -9.65590 -9.22534 -8.30128 -6.35747 1.38140 1.40700 1.51723 1.61483 2.03033 2.36269 2.98225 3.05587 3.70791 3.73235 3.80069 3.83490 3.89934 3.98216 4.08803 4.13477 4.19181 4.20854 4.29279 4.41910 4.45383 4.51584 4.55525 4.58395 4.62674 4.71005 4.74621 4.84385 4.85896 4.94747 4.97654 4.99918 5.06893 5.08961 5.13065 5.17556 5.26584 5.33238 5.34645 5.36270 5.43960 5.47356 5.57922 5.62553 6.06363 6.12830 6.20733 6.24845 6.48627 6.53944 6.72885 7.23846 7.29174 8.86679 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.019684 B = 0.002467 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.144284 B =11348.538263 C =11706.100552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.073 3.927 3 H 0.071 0.929 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.108 4.108 7 C 0.077 3.923 8 H 0.045 0.955 9 C -0.148 4.148 10 N -0.528 5.528 11 C 0.044 3.956 12 C 0.131 3.869 13 N -0.718 5.718 14 C 0.524 3.476 15 O -0.574 6.574 16 C 0.082 3.918 17 H 0.122 0.878 18 N -0.831 5.831 19 C -0.118 4.118 20 C -0.006 4.006 21 C -0.534 4.534 22 H 0.025 0.975 23 C 0.001 3.999 24 N -0.954 5.954 25 Si 0.955 3.045 26 H -0.264 1.264 27 H -0.290 1.290 28 H -0.238 1.238 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.414 0.586 46 H 0.344 0.656 47 H 0.355 0.645 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.025 0.975 51 H 0.032 0.968 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -24.369 -11.246 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.035 4.035 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.146 4.146 7 C -0.031 4.031 8 H 0.063 0.937 9 C -0.206 4.206 10 N -0.253 5.253 11 C -0.084 4.084 12 C 0.007 3.993 13 N -0.371 5.371 14 C 0.311 3.689 15 O -0.452 6.452 16 C -0.034 4.034 17 H 0.140 0.860 18 N -0.363 5.363 19 C -0.158 4.158 20 C -0.044 4.044 21 C -0.572 4.572 22 H 0.044 0.956 23 C -0.195 4.195 24 N -0.594 5.594 25 Si 0.777 3.223 26 H -0.189 1.189 27 H -0.216 1.216 28 H -0.161 1.161 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.250 0.750 46 H 0.157 0.843 47 H 0.170 0.830 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.043 0.957 51 H 0.050 0.950 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.892 -24.612 -11.747 29.366 hybrid contribution -2.278 1.338 0.691 2.731 sum 8.614 -23.273 -11.056 27.168 Atomic orbital electron populations 1.22459 0.97193 1.02546 1.02174 1.21763 0.93096 0.97873 0.90811 0.91127 1.21566 1.01008 0.96027 0.96054 1.21613 1.00824 0.95287 0.98124 1.21611 1.01365 0.98547 0.93048 1.21705 0.97266 0.87431 0.96679 0.93726 1.21938 1.01883 1.00785 0.95955 1.62056 1.59867 1.02203 1.01184 1.22277 0.97818 0.93509 0.94811 1.21162 0.99764 0.91986 0.86379 1.45785 1.46510 1.19497 1.25345 1.20781 0.79496 0.81254 0.87379 1.90634 1.35839 1.69200 1.49549 1.21446 0.90347 0.95608 0.95969 0.86002 1.58752 1.46782 1.21779 1.08950 1.22017 0.95714 0.99227 0.98817 1.19509 0.94526 0.95789 0.94562 1.21443 1.05854 1.32708 0.97240 0.95617 1.26095 0.95297 0.94304 1.03844 1.70085 1.19193 1.36008 1.34126 0.85595 0.80737 0.77728 0.78199 1.18902 1.21644 1.16082 0.93326 0.91707 0.91295 0.91814 0.91025 0.90999 0.91828 0.91699 0.90338 0.92338 0.90899 0.92215 0.88289 0.93464 0.93220 0.92028 0.74963 0.84255 0.83008 0.91691 0.94152 0.95655 0.94992 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 8.19 71.99 0.59 -2.31 16 2 C 0.07 1.21 2.78 44.94 0.13 1.34 16 3 H 0.07 1.40 6.28 -2.39 -0.02 1.39 16 4 C -0.11 -1.53 5.61 30.65 0.17 -1.35 16 5 C -0.12 -1.38 5.70 30.67 0.17 -1.21 16 6 C -0.11 -1.24 5.37 30.64 0.16 -1.08 16 7 C 0.08 1.01 2.15 44.94 0.10 1.11 16 8 H 0.04 0.61 6.19 -2.39 -0.01 0.60 16 9 C -0.15 -1.70 8.55 71.98 0.62 -1.08 16 10 N -0.53 -8.58 4.43 -846.02 -3.75 -12.32 16 11 C 0.04 0.73 4.67 86.30 0.40 1.13 16 12 C 0.13 2.92 5.64 86.38 0.49 3.41 16 13 N -0.72 -16.87 5.56 -463.06 -2.57 -19.44 16 14 C 0.52 16.30 7.08 87.65 0.62 16.92 16 15 O -0.57 -22.16 16.25 -3.03 -0.05 -22.20 16 16 C 0.08 2.45 3.21 44.17 0.14 2.59 16 17 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 18 N -0.83 -25.58 8.94 -171.80 -1.54 -27.11 16 19 C -0.12 -4.29 4.78 30.60 0.15 -4.15 16 20 C -0.01 -0.27 3.81 29.85 0.11 -0.16 16 21 C -0.53 -29.88 9.66 25.60 0.25 -29.63 16 22 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 23 C 0.00 0.07 5.47 84.65 0.46 0.53 16 24 N -0.95 -59.23 13.96 21.44 0.30 -58.93 16 25 Si 0.95 42.34 27.47 68.60 1.88 44.22 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 28 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 29 H 0.05 0.85 6.40 -2.39 -0.02 0.84 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.97 4.80 -2.39 -0.01 0.96 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.71 6.56 -2.39 -0.02 0.70 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.65 6.50 -2.38 -0.02 0.64 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 1.41 5.74 -2.38 -0.01 1.40 16 42 H 0.05 0.79 6.16 -2.39 -0.01 0.77 16 43 H 0.05 1.27 6.48 -2.38 -0.02 1.26 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.41 7.47 8.47 -92.71 -0.79 6.68 16 46 H 0.34 11.21 8.58 -89.70 -0.77 10.44 16 47 H 0.35 10.26 7.55 -89.69 -0.68 9.58 16 48 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.03 1.05 5.92 -2.39 -0.01 1.03 16 51 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 52 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -70.03 387.22 -2.52 -72.55 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -1.36 Total: 37.17 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 4.56 Total: -13.94 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -7.55 Total: -117.80 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Total: -70.03 -2.52 -72.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424150995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.531 kcal (2) G-P(sol) polarization free energy of solvation -70.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds