Wall clock time and date at job start Tue Mar 31 2020 10:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.53002 * 109.46982 * 239.99858 * 2 1 3 5 5 C 1.52996 * 109.46969 * 60.00261 * 4 2 1 6 6 N 1.46905 * 109.46987 * 179.97438 * 5 4 2 7 7 C 1.48006 * 110.99759 * 298.72259 * 6 5 4 8 8 C 1.50446 * 112.82263 * 191.34447 * 7 6 5 9 9 C 1.54310 * 108.50129 * 93.72628 * 8 7 6 10 10 C 1.45879 * 112.18646 * 281.46361 * 9 8 7 11 11 C 1.54313 * 112.18424 * 61.11903 * 10 9 8 12 12 C 1.47995 * 111.00085 * 170.00132 * 6 5 4 13 13 N 1.46506 * 109.46831 * 120.00228 * 2 1 3 14 14 C 1.34777 * 119.99873 * 299.99477 * 13 2 1 15 15 O 1.21592 * 119.99797 * 0.02562 * 14 13 2 16 16 N 1.34774 * 119.99902 * 180.02562 * 14 13 2 17 17 C 1.46507 * 119.99769 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46707 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00408 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99553 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00388 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99824 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47589 * 59.99940 * 22 20 18 24 24 H 1.48504 * 109.47356 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47017 * 299.99924 * 22 20 18 26 26 H 1.09001 * 109.46812 * 300.00216 * 1 2 3 27 27 H 1.09002 * 109.46935 * 59.99874 * 1 2 3 28 28 H 1.08992 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46952 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 32 32 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47059 * 299.99867 * 4 2 1 34 34 H 1.08992 * 109.47534 * 299.99582 * 5 4 2 35 35 H 1.08996 * 109.47134 * 60.00388 * 5 4 2 36 36 H 1.08994 * 108.80916 * 312.20579 * 7 6 5 37 37 H 1.08997 * 108.81253 * 70.48697 * 7 6 5 38 38 H 1.09006 * 109.63494 * 334.02629 * 8 7 6 39 39 H 1.08998 * 109.63632 * 213.42744 * 8 7 6 40 40 H 1.09001 * 108.93847 * 160.76446 * 9 8 7 41 41 H 1.08994 * 108.86744 * 42.11045 * 9 8 7 42 42 H 1.09003 * 108.93753 * 300.42597 * 10 9 8 43 43 H 1.08994 * 108.94199 * 181.81701 * 10 9 8 44 44 H 1.08997 * 109.63232 * 161.76103 * 11 10 9 45 45 H 1.08999 * 109.63348 * 41.16656 * 11 10 9 46 46 H 1.08994 * 108.81090 * 205.70368 * 12 6 5 47 47 H 1.09006 * 108.80978 * 324.08473 * 12 6 5 48 48 H 0.96999 * 120.00080 * 120.00080 * 13 2 1 49 49 H 0.96999 * 120.00050 * 359.97438 * 16 14 13 50 50 H 1.08999 * 109.46398 * 299.99705 * 17 16 14 51 51 H 1.08992 * 109.47350 * 59.99653 * 17 16 14 52 52 H 0.97005 * 120.00521 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 0.0000 -2.4984 6 7 2.0202 -0.6922 -3.6979 7 6 3.4994 -0.6848 -3.7472 8 6 4.0412 -1.1355 -5.0764 9 6 4.2835 0.1102 -5.9543 10 6 3.0485 0.6198 -6.5402 11 6 2.0305 1.0560 -5.4657 12 6 1.3598 -0.1737 -4.9166 13 7 2.0183 -0.6907 1.1962 14 6 1.6928 -0.2302 2.4203 15 8 0.9934 0.7582 2.5318 16 7 2.1424 -0.8653 3.5207 17 6 1.7880 -0.3650 4.8514 18 6 2.4127 -1.2463 5.9021 19 1 3.0133 -2.0944 5.6082 20 6 2.2176 -0.9698 7.2387 21 7 1.4867 0.0633 7.5966 22 14 2.9914 -2.0626 8.5411 23 1 4.4680 -2.0504 8.3842 24 1 2.6333 -1.5548 9.8899 25 1 2.4884 -3.4511 8.3849 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4423 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1301 -0.7217 -1.2490 33 1 1.6767 -1.7490 -1.2492 34 1 0.4401 0.0000 -2.4985 35 1 1.8935 1.0276 -2.4985 36 1 3.8526 0.3270 -3.5485 37 1 3.8803 -1.3469 -2.9697 38 1 3.3192 -1.7915 -5.5629 39 1 4.9811 -1.6670 -4.9277 40 1 4.9741 -0.1510 -6.7562 41 1 4.7329 0.8914 -5.3413 42 1 2.6008 -0.1604 -7.1558 43 1 3.2839 1.4757 -7.1727 44 1 1.2836 1.7115 -5.9135 45 1 2.5479 1.5805 -4.6625 46 1 1.3714 -0.9511 -5.6805 47 1 0.3241 0.0693 -4.6788 48 1 2.5760 -1.4794 1.1072 49 1 2.7000 -1.6540 3.4317 50 1 2.1568 0.6542 4.9663 51 1 0.7042 -0.3743 4.9663 52 1 1.3491 0.2576 8.5370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426419514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:35 Heat of formation + Delta-G solvation = -45.478592 kcal Electronic energy + Delta-G solvation = -26704.839702 eV Core-core repulsion = 23124.532339 eV Total energy + Delta-G solvation = -3580.307364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.04044 -39.38564 -36.99510 -34.75105 -33.92923 -32.51523 -32.45416 -31.38282 -28.99398 -27.07493 -26.91690 -26.37047 -25.16875 -23.64469 -22.41971 -20.89992 -20.31694 -19.68594 -19.06246 -17.96452 -16.87631 -16.20995 -15.94000 -15.57680 -15.05279 -14.86046 -14.64987 -14.46362 -14.26842 -14.05516 -13.65040 -13.45629 -13.38230 -13.26208 -12.81020 -12.67256 -12.48966 -12.19284 -11.91148 -11.89894 -11.74704 -11.52284 -11.37818 -11.19559 -11.11348 -10.98475 -10.97310 -10.91754 -10.83221 -10.71912 -10.61948 -10.47978 -10.24213 -9.34394 -9.06989 -8.68603 -8.59854 -8.39725 -7.68802 -6.11888 -4.18193 3.27981 3.30153 3.33154 3.37298 3.65315 4.04149 4.28003 4.35402 4.37188 4.53670 4.75354 4.81746 4.86391 4.90430 5.01177 5.04404 5.13144 5.23880 5.25710 5.26730 5.31345 5.34286 5.41662 5.48183 5.51507 5.61032 5.68629 5.72123 5.76505 5.83966 5.86637 5.89079 5.92161 5.98040 5.99802 6.01815 6.13163 6.20315 6.60475 6.66444 6.86642 6.91375 7.09382 7.21100 7.58134 7.62404 7.63446 7.97318 8.11159 8.81616 9.03321 9.40689 9.55601 10.98258 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.002173 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.523771 B =12881.608317 C =13340.130758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.197 3.803 3 C -0.165 4.165 4 C -0.117 4.117 5 C 0.061 3.939 6 N -0.549 5.549 7 C 0.060 3.940 8 C -0.121 4.121 9 C -0.122 4.122 10 C -0.117 4.117 11 C -0.151 4.151 12 C 0.060 3.940 13 N -0.751 5.751 14 C 0.696 3.304 15 O -0.597 6.597 16 N -0.732 5.732 17 C 0.269 3.731 18 C -0.542 4.542 19 H 0.061 0.939 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.389 0.611 49 H 0.385 0.615 50 H 0.023 0.977 51 H 0.024 0.976 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -1.482 -28.874 29.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.110 3.890 3 C -0.223 4.223 4 C -0.155 4.155 5 C -0.067 4.067 6 N -0.274 5.274 7 C -0.067 4.067 8 C -0.159 4.159 9 C -0.160 4.160 10 C -0.154 4.154 11 C -0.190 4.190 12 C -0.068 4.068 13 N -0.408 5.408 14 C 0.396 3.604 15 O -0.477 6.477 16 N -0.384 5.384 17 C 0.147 3.853 18 C -0.580 4.580 19 H 0.079 0.921 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.222 0.778 49 H 0.217 0.783 50 H 0.041 0.959 51 H 0.042 0.958 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.728 -0.907 -28.515 28.660 hybrid contribution 1.225 -0.433 0.638 1.448 sum 3.953 -1.340 -27.877 28.188 Atomic orbital electron populations 1.22298 0.94723 1.01989 1.03225 1.19909 0.94015 0.91941 0.83141 1.22305 1.00492 0.96204 1.03271 1.21817 1.00912 1.00228 0.92574 1.22208 1.00359 0.95401 0.88713 1.61864 1.06513 1.56826 1.02205 1.21809 0.86947 0.99956 0.97940 1.21441 1.01227 0.97648 0.95594 1.20615 0.97876 0.97825 0.99660 1.20541 0.96173 1.00721 0.97977 1.21939 0.99055 0.98936 0.99035 1.21880 0.97500 0.95250 0.92132 1.45318 1.57742 1.33299 1.04414 1.16123 0.80715 0.83315 0.80256 1.90795 1.43184 1.27838 1.85834 1.45748 1.54514 1.31655 1.06497 1.18932 0.96199 0.94920 0.75211 1.21203 1.32919 1.12920 0.90958 0.92063 1.24945 0.95138 0.95426 0.98559 1.69968 1.38001 1.27030 1.17321 0.86480 0.79562 0.80512 0.80354 1.20131 1.21109 1.20107 0.89834 0.92551 0.92977 0.93275 0.92601 0.89773 0.91550 0.90606 0.90188 0.94362 0.94826 0.90874 0.90704 0.91173 0.92192 0.92306 0.92010 0.92455 0.91405 0.91727 0.90899 0.91388 0.77818 0.78318 0.95864 0.95840 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.05 37.16 0.30 -1.98 16 2 C 0.20 2.60 0.83 -131.81 -0.11 2.49 16 3 C -0.16 -2.29 8.05 37.16 0.30 -1.99 16 4 C -0.12 -1.18 4.19 -26.73 -0.11 -1.29 16 5 C 0.06 0.56 4.15 -3.82 -0.02 0.54 16 6 N -0.55 -4.66 4.71 -235.91 -1.11 -5.77 16 7 C 0.06 0.48 4.32 -4.49 -0.02 0.46 16 8 C -0.12 -0.81 5.63 -27.32 -0.15 -0.96 16 9 C -0.12 -0.76 5.30 -29.42 -0.16 -0.91 16 10 C -0.12 -0.70 5.30 -29.41 -0.16 -0.86 16 11 C -0.15 -1.00 5.60 -27.32 -0.15 -1.16 16 12 C 0.06 0.44 5.16 -4.50 -0.02 0.41 16 13 N -0.75 -11.38 5.11 -52.41 -0.27 -11.65 16 14 C 0.70 14.29 7.98 -86.92 -0.69 13.60 16 15 O -0.60 -14.40 12.55 5.28 0.07 -14.34 16 16 N -0.73 -15.87 5.55 -66.41 -0.37 -16.24 16 17 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 18 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H 0.08 1.48 6.16 -51.93 -0.32 1.16 16 27 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.08 1.49 6.16 -51.93 -0.32 1.17 16 32 H 0.07 0.65 6.67 -51.93 -0.35 0.30 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.74 6.08 -51.93 -0.32 0.42 16 35 H 0.04 0.36 6.10 -51.93 -0.32 0.05 16 36 H 0.03 0.29 6.44 -51.93 -0.33 -0.05 16 37 H 0.07 0.60 6.91 -51.93 -0.36 0.24 16 38 H 0.07 0.53 7.08 -51.93 -0.37 0.16 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 42 H 0.06 0.35 7.52 -51.93 -0.39 -0.04 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.51 6.74 -51.93 -0.35 0.16 16 46 H 0.07 0.52 6.59 -51.93 -0.34 0.17 16 47 H 0.07 0.49 7.64 -51.93 -0.40 0.09 16 48 H 0.39 4.85 8.49 -40.82 -0.35 4.50 16 49 H 0.38 7.20 8.34 -40.82 -0.34 6.86 16 50 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -31.60 383.24 -10.87 -42.48 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -9.24 Total: 7.32 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.44 Total: 2.02 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -1.01 Total: -59.32 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.07 Total: -14.34 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.60 -10.87 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426419514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.002 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds