Wall clock time and date at job start Tue Mar 31 2020 10:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.53002 * 109.46982 * 239.99858 * 2 1 3 5 5 C 1.52996 * 109.46969 * 60.00261 * 4 2 1 6 6 N 1.46905 * 109.46987 * 179.97438 * 5 4 2 7 7 C 1.48006 * 110.99759 * 298.72259 * 6 5 4 8 8 C 1.50446 * 112.82263 * 191.34447 * 7 6 5 9 9 C 1.54310 * 108.50129 * 93.72628 * 8 7 6 10 10 C 1.45879 * 112.18646 * 281.46361 * 9 8 7 11 11 C 1.54313 * 112.18424 * 61.11903 * 10 9 8 12 12 C 1.47995 * 111.00085 * 170.00132 * 6 5 4 13 13 N 1.46506 * 109.46831 * 120.00228 * 2 1 3 14 14 C 1.34777 * 119.99873 * 299.99477 * 13 2 1 15 15 O 1.21592 * 119.99797 * 0.02562 * 14 13 2 16 16 N 1.34774 * 119.99902 * 180.02562 * 14 13 2 17 17 C 1.46507 * 119.99769 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46707 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00408 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99553 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00388 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99824 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47589 * 59.99940 * 22 20 18 24 24 H 1.48504 * 109.47356 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47017 * 299.99924 * 22 20 18 26 26 H 1.09001 * 109.46812 * 300.00216 * 1 2 3 27 27 H 1.09002 * 109.46935 * 59.99874 * 1 2 3 28 28 H 1.08992 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46952 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 32 32 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47059 * 299.99867 * 4 2 1 34 34 H 1.08992 * 109.47534 * 299.99582 * 5 4 2 35 35 H 1.08996 * 109.47134 * 60.00388 * 5 4 2 36 36 H 1.08994 * 108.80916 * 312.20579 * 7 6 5 37 37 H 1.08997 * 108.81253 * 70.48697 * 7 6 5 38 38 H 1.09006 * 109.63494 * 334.02629 * 8 7 6 39 39 H 1.08998 * 109.63632 * 213.42744 * 8 7 6 40 40 H 1.09001 * 108.93847 * 160.76446 * 9 8 7 41 41 H 1.08994 * 108.86744 * 42.11045 * 9 8 7 42 42 H 1.09003 * 108.93753 * 300.42597 * 10 9 8 43 43 H 1.08994 * 108.94199 * 181.81701 * 10 9 8 44 44 H 1.08997 * 109.63232 * 161.76103 * 11 10 9 45 45 H 1.08999 * 109.63348 * 41.16656 * 11 10 9 46 46 H 1.08994 * 108.81090 * 205.70368 * 12 6 5 47 47 H 1.09006 * 108.80978 * 324.08473 * 12 6 5 48 48 H 0.96999 * 120.00080 * 120.00080 * 13 2 1 49 49 H 0.96999 * 120.00050 * 359.97438 * 16 14 13 50 50 H 1.08999 * 109.46398 * 299.99705 * 17 16 14 51 51 H 1.08992 * 109.47350 * 59.99653 * 17 16 14 52 52 H 0.97005 * 120.00521 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 0.0000 -2.4984 6 7 2.0202 -0.6922 -3.6979 7 6 3.4994 -0.6848 -3.7472 8 6 4.0412 -1.1355 -5.0764 9 6 4.2835 0.1102 -5.9543 10 6 3.0485 0.6198 -6.5402 11 6 2.0305 1.0560 -5.4657 12 6 1.3598 -0.1737 -4.9166 13 7 2.0183 -0.6907 1.1962 14 6 1.6928 -0.2302 2.4203 15 8 0.9934 0.7582 2.5318 16 7 2.1424 -0.8653 3.5207 17 6 1.7880 -0.3650 4.8514 18 6 2.4127 -1.2463 5.9021 19 1 3.0133 -2.0944 5.6082 20 6 2.2176 -0.9698 7.2387 21 7 1.4867 0.0633 7.5966 22 14 2.9914 -2.0626 8.5411 23 1 4.4680 -2.0504 8.3842 24 1 2.6333 -1.5548 9.8899 25 1 2.4884 -3.4511 8.3849 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4423 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1301 -0.7217 -1.2490 33 1 1.6767 -1.7490 -1.2492 34 1 0.4401 0.0000 -2.4985 35 1 1.8935 1.0276 -2.4985 36 1 3.8526 0.3270 -3.5485 37 1 3.8803 -1.3469 -2.9697 38 1 3.3192 -1.7915 -5.5629 39 1 4.9811 -1.6670 -4.9277 40 1 4.9741 -0.1510 -6.7562 41 1 4.7329 0.8914 -5.3413 42 1 2.6008 -0.1604 -7.1558 43 1 3.2839 1.4757 -7.1727 44 1 1.2836 1.7115 -5.9135 45 1 2.5479 1.5805 -4.6625 46 1 1.3714 -0.9511 -5.6805 47 1 0.3241 0.0693 -4.6788 48 1 2.5760 -1.4794 1.1072 49 1 2.7000 -1.6540 3.4317 50 1 2.1568 0.6542 4.9663 51 1 0.7042 -0.3743 4.9663 52 1 1.3491 0.2576 8.5370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426419514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:35 Heat of formation + Delta-G solvation = -67.771069 kcal Electronic energy + Delta-G solvation = -26705.806377 eV Core-core repulsion = 23124.532339 eV Total energy + Delta-G solvation = -3581.274038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28135 -40.28178 -38.22963 -36.05548 -35.38501 -34.41973 -33.04996 -32.75085 -29.94255 -28.90432 -28.23465 -27.08964 -25.73382 -25.04151 -23.93590 -21.82530 -21.36254 -20.68185 -20.04836 -19.64959 -18.12988 -17.53997 -16.96040 -16.69913 -16.39944 -16.30437 -15.81017 -15.76557 -15.15225 -15.00593 -14.87041 -14.55179 -14.43420 -14.08855 -13.97510 -13.92477 -13.87430 -13.31814 -13.14266 -13.04436 -12.90025 -12.75536 -12.67112 -12.54861 -12.24196 -12.18533 -12.14229 -11.82865 -11.76851 -11.62580 -11.47869 -11.44483 -11.31034 -11.05751 -10.76755 -10.74586 -10.13850 -9.54044 -9.04551 -8.26937 -6.43299 1.43488 1.48088 1.56015 1.93581 2.35526 2.40511 2.92074 3.07618 3.54039 3.77491 3.81569 3.90654 3.97771 4.04988 4.15201 4.22599 4.29969 4.36508 4.48116 4.49091 4.59180 4.61985 4.77080 4.78491 4.81186 4.85168 4.90746 4.96452 4.99782 5.07736 5.10288 5.10737 5.15552 5.17643 5.25216 5.29457 5.30272 5.35967 5.39458 5.44516 5.48959 5.49625 5.51734 5.76476 5.78472 5.88746 6.21031 6.29873 6.36028 6.68980 7.26420 7.40785 7.84398 8.85053 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.002173 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.523771 B =12881.608317 C =13340.130758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.194 3.806 3 C -0.159 4.159 4 C -0.102 4.102 5 C 0.065 3.935 6 N -0.554 5.554 7 C 0.060 3.940 8 C -0.118 4.118 9 C -0.121 4.121 10 C -0.116 4.116 11 C -0.147 4.147 12 C 0.059 3.941 13 N -0.729 5.729 14 C 0.693 3.307 15 O -0.636 6.636 16 N -0.728 5.728 17 C 0.289 3.711 18 C -0.555 4.555 19 H 0.082 0.918 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.986 3.014 23 H -0.262 1.262 24 H -0.285 1.285 25 H -0.262 1.262 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.407 0.593 49 H 0.402 0.598 50 H -0.017 1.017 51 H -0.016 1.016 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 -3.495 -30.608 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.107 3.893 3 C -0.217 4.217 4 C -0.140 4.140 5 C -0.063 4.063 6 N -0.279 5.279 7 C -0.067 4.067 8 C -0.156 4.156 9 C -0.158 4.158 10 C -0.153 4.153 11 C -0.186 4.186 12 C -0.068 4.068 13 N -0.386 5.386 14 C 0.393 3.607 15 O -0.518 6.518 16 N -0.382 5.382 17 C 0.165 3.835 18 C -0.593 4.593 19 H 0.100 0.900 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.809 3.191 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.187 1.187 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.242 0.758 49 H 0.237 0.763 50 H 0.001 0.999 51 H 0.001 0.999 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.182 -2.965 -30.329 30.759 hybrid contribution 0.743 0.252 1.067 1.325 sum 4.925 -2.712 -29.261 29.796 Atomic orbital electron populations 1.22236 0.95164 1.02024 1.02381 1.20140 0.93744 0.91918 0.83449 1.22232 1.00709 0.96485 1.02323 1.21674 1.01333 1.00012 0.90971 1.22130 1.00416 0.95149 0.88621 1.61862 1.06893 1.56812 1.02305 1.21839 0.86621 0.99573 0.98649 1.21416 1.01408 0.97786 0.94945 1.20601 0.98099 0.97409 0.99713 1.20536 0.95935 1.01024 0.97820 1.21897 0.99228 0.98641 0.98852 1.21916 0.97529 0.95597 0.91738 1.45164 1.56900 1.33486 1.03059 1.16297 0.80259 0.82768 0.81356 1.90790 1.44754 1.29598 1.86625 1.45361 1.55236 1.32445 1.05191 1.18333 0.93563 0.93395 0.78167 1.21582 1.33073 1.13395 0.91278 0.89959 1.26076 0.95414 0.96874 1.01342 1.70139 1.39561 1.29173 1.18025 0.85195 0.78954 0.78470 0.76500 1.18692 1.21078 1.18671 0.94080 0.89956 0.92450 0.92772 0.90205 0.94005 0.90663 0.89996 0.90021 0.94596 0.95459 0.91030 0.90926 0.90462 0.91405 0.92989 0.91516 0.92080 0.90773 0.92925 0.90474 0.91192 0.75757 0.76303 0.99880 0.99852 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 8.05 71.98 0.58 -3.80 16 2 C 0.19 4.91 0.83 3.60 0.00 4.91 16 3 C -0.16 -4.39 8.05 71.98 0.58 -3.81 16 4 C -0.10 -1.80 4.19 30.59 0.13 -1.67 16 5 C 0.07 1.04 4.15 86.30 0.36 1.40 16 6 N -0.55 -8.15 4.71 -900.28 -4.24 -12.40 16 7 C 0.06 0.83 4.32 85.26 0.37 1.20 16 8 C -0.12 -1.32 5.63 30.21 0.17 -1.15 16 9 C -0.12 -1.26 5.30 28.86 0.15 -1.11 16 10 C -0.12 -1.16 5.30 28.86 0.15 -1.01 16 11 C -0.15 -1.70 5.60 30.21 0.17 -1.53 16 12 C 0.06 0.74 5.16 85.27 0.44 1.18 16 13 N -0.73 -21.57 5.11 -437.99 -2.24 -23.81 16 14 C 0.69 29.16 7.98 179.06 1.43 30.59 16 15 O -0.64 -32.33 12.55 -4.01 -0.05 -32.38 16 16 N -0.73 -32.18 5.55 -482.29 -2.68 -34.86 16 17 C 0.29 16.34 5.43 85.63 0.46 16.81 16 18 C -0.56 -30.83 9.28 25.60 0.24 -30.59 16 19 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 20 C 0.00 0.14 5.46 84.65 0.46 0.60 16 21 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 22 Si 0.99 42.87 29.54 68.60 2.03 44.89 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 26 H 0.04 1.50 6.16 -2.39 -0.01 1.48 16 27 H 0.08 1.78 6.43 -2.39 -0.02 1.77 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.78 6.43 -2.39 -0.02 1.76 16 31 H 0.04 1.53 6.16 -2.39 -0.01 1.52 16 32 H 0.07 1.25 6.67 -2.38 -0.02 1.23 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.30 6.08 -2.39 -0.01 1.28 16 35 H 0.04 0.60 6.10 -2.39 -0.01 0.59 16 36 H 0.03 0.41 6.44 -2.39 -0.02 0.40 16 37 H 0.07 1.00 6.91 -2.39 -0.02 0.99 16 38 H 0.07 0.87 7.08 -2.38 -0.02 0.85 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.05 0.62 7.51 -2.39 -0.02 0.60 16 42 H 0.07 0.62 7.52 -2.39 -0.02 0.60 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 0.75 6.74 -2.39 -0.02 0.73 16 46 H 0.08 0.92 6.59 -2.39 -0.02 0.90 16 47 H 0.07 0.85 7.64 -2.38 -0.02 0.83 16 48 H 0.41 9.31 8.49 -92.71 -0.79 8.53 16 49 H 0.40 14.75 8.34 -92.71 -0.77 13.98 16 50 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 51 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 52 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -71.66 383.24 -1.85 -73.51 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.65 Total: 29.71 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.70 Total: 12.02 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -8.88 Total: -127.74 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.05 Total: -32.38 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -71.66 -1.85 -73.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426419514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.736 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds