Wall clock time and date at job start Tue Mar 31 2020 10:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 N 1.46497 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.46494 * 120.00357 * 267.00235 * 4 3 2 6 6 C 1.53002 * 109.47174 * 269.99801 * 5 4 3 7 7 C 1.52994 * 109.47447 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47257 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00101 * 169.99773 * 8 7 6 10 10 C 1.46895 * 110.99986 * 293.95209 * 8 7 6 11 11 C 1.34781 * 119.99668 * 86.99586 * 4 3 2 12 12 O 1.21581 * 119.99865 * 185.17028 * 11 4 3 13 13 N 1.34775 * 119.99972 * 5.17697 * 11 4 3 14 14 C 1.46498 * 119.99990 * 175.48924 * 13 11 4 15 15 C 1.53009 * 109.47068 * 183.76048 * 14 13 11 16 16 C 1.50697 * 115.54732 * 307.15004 * 15 14 13 17 17 H 1.08001 * 119.99902 * 143.79247 * 16 15 14 18 18 C 1.37875 * 120.00140 * 323.78666 * 16 15 14 19 19 N 1.31516 * 120.00300 * 350.96239 * 18 16 15 20 20 Si 1.86800 * 120.00017 * 170.95428 * 18 16 15 21 21 H 1.48501 * 109.47298 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47243 * 120.00540 * 20 18 16 23 23 H 1.48505 * 109.47297 * 240.00557 * 20 18 16 24 24 C 1.52993 * 117.49766 * 161.47922 * 15 14 13 25 25 C 1.53000 * 117.49633 * 92.82054 * 15 14 13 26 26 H 1.08993 * 109.47268 * 59.99672 * 1 2 3 27 27 H 1.09001 * 109.47493 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47043 * 299.99126 * 1 2 3 29 29 H 1.08998 * 109.46815 * 240.00078 * 2 1 3 30 30 H 1.08998 * 109.47139 * 120.00795 * 2 1 3 31 31 H 1.09011 * 109.46812 * 60.00307 * 3 2 1 32 32 H 1.08993 * 109.47220 * 300.00357 * 3 2 1 33 33 H 1.08997 * 109.47411 * 29.99899 * 5 4 3 34 34 H 1.09000 * 109.47214 * 149.99784 * 5 4 3 35 35 H 1.09004 * 109.46905 * 299.99955 * 6 5 4 36 36 H 1.09000 * 109.47065 * 59.99891 * 6 5 4 37 37 H 1.09004 * 109.46784 * 299.99726 * 7 6 5 38 38 H 1.09000 * 109.47325 * 59.99747 * 7 6 5 39 39 H 1.09003 * 109.47026 * 59.99650 * 9 8 7 40 40 H 1.09003 * 109.47329 * 179.97438 * 9 8 7 41 41 H 1.09000 * 109.46980 * 299.99959 * 9 8 7 42 42 H 1.09001 * 109.47558 * 59.99663 * 10 8 7 43 43 H 1.09001 * 109.47688 * 179.97438 * 10 8 7 44 44 H 1.09001 * 109.47126 * 299.99700 * 10 8 7 45 45 H 0.96998 * 119.99983 * 355.21001 * 13 11 4 46 46 H 1.09002 * 109.47212 * 303.75582 * 14 13 11 47 47 H 1.09001 * 109.47513 * 63.76063 * 14 13 11 48 48 H 0.96996 * 120.00443 * 185.02298 * 19 18 16 49 49 H 1.09000 * 117.50036 * 0.02562 * 24 15 14 50 50 H 1.09002 * 117.50247 * 145.01917 * 24 15 14 51 51 H 1.09004 * 117.49437 * 214.97919 * 25 15 14 52 52 H 1.08993 * 117.50395 * 359.97421 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.5090 1.2678 6 6 4.4919 2.9727 1.6333 7 6 5.2570 3.0422 2.9564 8 7 5.5012 4.4476 3.3076 9 6 6.0194 4.5656 4.6771 10 6 6.4115 5.0805 2.3439 11 6 4.1793 1.3811 -1.1648 12 8 5.3914 1.2862 -1.1614 13 7 3.5100 1.4251 -2.3337 14 6 4.2473 1.4581 -3.5992 15 6 3.2612 1.5997 -4.7605 16 6 2.1448 0.5879 -4.7921 17 1 1.1596 0.8810 -5.1238 18 6 2.3810 -0.7119 -4.3976 19 7 3.6109 -1.1152 -4.1645 20 14 0.9541 -1.9001 -4.1940 21 1 -0.3184 -1.2052 -4.5150 22 1 1.1342 -3.0522 -5.1135 23 1 0.9121 -2.3878 -2.7919 24 6 3.8148 2.0829 -6.1024 25 6 2.9470 3.0141 -5.2521 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.6477 1.0358 2.0532 34 1 5.1894 0.9890 1.1650 35 1 5.0813 3.4459 0.8479 36 1 3.5395 3.4927 1.7361 37 1 4.6679 2.5689 3.7420 38 1 6.2094 2.5223 2.8532 39 1 6.9575 4.0167 4.7591 40 1 6.1918 5.6162 4.9110 41 1 5.2937 4.1515 5.3770 42 1 5.9710 5.0407 1.3477 43 1 6.5749 6.1203 2.6272 44 1 7.3638 4.5503 2.3415 45 1 2.5400 1.4307 -2.3373 46 1 4.9321 2.3062 -3.5987 47 1 4.8137 0.5339 -3.7141 48 1 3.7849 -2.0469 -3.9581 49 1 4.8816 2.2997 -6.1581 50 1 3.3713 1.6694 -7.0082 51 1 1.9328 3.2127 -5.5987 52 1 3.4424 3.8438 -4.7480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431191703.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:29 Heat of formation + Delta-G solvation = -6.993752 kcal Electronic energy + Delta-G solvation = -27601.414861 eV Core-core repulsion = 24022.776325 eV Total energy + Delta-G solvation = -3578.638536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.60023 -37.80131 -36.82511 -35.70859 -33.72315 -32.67210 -32.15440 -31.11306 -27.74088 -26.87935 -26.15418 -25.52190 -24.59109 -22.52988 -21.55939 -21.18685 -20.81506 -19.26306 -18.84324 -17.58390 -16.36114 -15.90942 -15.65416 -15.34112 -15.05085 -14.77088 -14.45702 -14.36908 -14.14368 -13.82767 -13.65177 -13.36312 -12.88358 -12.57158 -12.54157 -12.43599 -12.06066 -11.91802 -11.84917 -11.75158 -11.66083 -11.57083 -11.36954 -11.13805 -11.11123 -11.01752 -10.74898 -10.52609 -10.48144 -10.44676 -10.24794 -9.61918 -9.20747 -9.06896 -8.80251 -8.51964 -8.31534 -8.18182 -7.63132 -6.04165 -4.16094 3.18689 3.28254 3.29728 3.31685 3.82764 4.06828 4.29528 4.69130 4.89390 4.99087 5.02450 5.07595 5.12976 5.20934 5.24020 5.38755 5.44679 5.45650 5.50196 5.51582 5.52838 5.59893 5.63440 5.68576 5.81162 5.84096 5.89570 5.98425 6.05716 6.16983 6.20463 6.33863 6.35313 6.38755 6.53437 6.60320 6.65012 6.75768 6.85341 6.88196 6.91175 7.01060 7.14820 7.30383 7.57917 7.66765 7.78544 7.96697 8.34926 8.78295 8.96228 9.45015 9.50669 10.91634 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.003923 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.351034 B = 7135.478114 C = 8283.388154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.116 3.884 4 N -0.636 5.636 5 C 0.139 3.861 6 C -0.131 4.131 7 C 0.058 3.942 8 N -0.549 5.549 9 C 0.024 3.976 10 C 0.021 3.979 11 C 0.701 3.299 12 O -0.606 6.606 13 N -0.705 5.705 14 C 0.180 3.820 15 C 0.040 3.960 16 C -0.500 4.500 17 H 0.061 0.939 18 C 0.078 3.922 19 N -0.862 5.862 20 Si 0.883 3.117 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.280 1.280 24 C -0.195 4.195 25 C -0.212 4.212 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.026 0.974 45 H 0.396 0.604 46 H 0.021 0.979 47 H 0.105 0.895 48 H 0.262 0.738 49 H 0.066 0.934 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 6.867 14.538 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C -0.008 4.008 4 N -0.374 5.374 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.071 4.071 8 N -0.272 5.272 9 C -0.124 4.124 10 C -0.127 4.127 11 C 0.402 3.598 12 O -0.487 6.487 13 N -0.358 5.358 14 C 0.057 3.943 15 C 0.039 3.961 16 C -0.538 4.538 17 H 0.079 0.921 18 C -0.127 4.127 19 N -0.498 5.498 20 Si 0.710 3.290 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.205 1.205 24 C -0.234 4.234 25 C -0.250 4.250 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.232 0.768 46 H 0.039 0.961 47 H 0.122 0.878 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.642 6.903 14.591 16.154 hybrid contribution -0.454 -1.135 -0.014 1.222 sum -1.095 5.768 14.577 15.715 Atomic orbital electron populations 1.21694 0.95459 1.01773 1.01743 1.21997 0.95904 0.97581 1.03092 1.21480 0.80152 0.96608 1.02577 1.47064 1.05565 1.79600 1.05145 1.21079 0.97610 0.95576 0.84327 1.21996 1.00931 0.97811 0.96305 1.22075 0.99198 0.88013 0.97788 1.61991 1.46479 1.16249 1.02513 1.22372 0.98296 1.01694 0.90029 1.22442 0.94304 0.98897 0.97097 1.15942 0.85238 0.78086 0.80517 1.90819 1.12372 1.59032 1.86430 1.45088 1.10068 1.76392 1.04221 1.20823 0.92602 1.01100 0.79814 1.19189 0.96077 0.90433 0.90408 1.20499 0.94793 0.93467 1.44994 0.92080 1.24949 0.95358 0.98041 0.94329 1.69876 1.18378 1.15981 1.45529 0.86675 0.82945 0.81240 0.78095 1.19603 1.21039 1.20545 1.22905 0.96669 1.05994 0.97841 1.22952 0.99395 0.95190 1.07416 0.92170 0.92817 0.92949 0.90819 0.92133 0.90790 0.90698 0.91404 0.90150 0.91333 0.91297 0.90874 0.94568 0.95777 0.91530 0.91453 0.90761 0.91661 0.95562 0.76764 0.96091 0.87772 0.92751 0.91553 0.90250 0.90705 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.15 -2.13 6.24 -26.73 -0.17 -2.29 16 3 C 0.12 1.62 5.18 -4.04 -0.02 1.60 16 4 N -0.64 -10.60 2.48 -179.43 -0.44 -11.04 16 5 C 0.14 1.95 5.43 -4.04 -0.02 1.93 16 6 C -0.13 -1.68 5.46 -26.73 -0.15 -1.82 16 7 C 0.06 0.64 4.96 -3.82 -0.02 0.62 16 8 N -0.55 -6.01 5.02 -251.26 -1.26 -7.27 16 9 C 0.02 0.21 9.57 60.06 0.57 0.79 16 10 C 0.02 0.22 9.32 60.06 0.56 0.78 16 11 C 0.70 15.00 8.25 -86.92 -0.72 14.28 16 12 O -0.61 -15.06 15.90 5.29 0.08 -14.98 16 13 N -0.71 -15.43 5.16 -65.22 -0.34 -15.77 16 14 C 0.18 4.35 4.75 -4.04 -0.02 4.33 16 15 C 0.04 0.94 2.00 -155.66 -0.31 0.63 16 16 C -0.50 -12.64 8.22 -34.44 -0.28 -12.92 16 17 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 18 C 0.08 1.99 5.16 -17.82 -0.09 1.90 16 19 N -0.86 -23.11 10.76 55.43 0.60 -22.51 16 20 Si 0.88 19.78 29.55 -169.99 -5.02 14.76 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.20 -4.34 9.96 -26.70 -0.27 -4.60 16 25 C -0.21 -4.46 9.92 -26.69 -0.26 -4.73 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.84 8.05 -51.92 -0.42 0.42 16 32 H 0.07 1.09 6.39 -51.93 -0.33 0.76 16 33 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.08 1.29 7.36 -51.93 -0.38 0.91 16 35 H 0.07 1.04 6.55 -51.93 -0.34 0.70 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 38 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 41 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.07 0.87 6.47 -51.93 -0.34 0.54 16 43 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 44 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.40 8.32 5.64 -40.82 -0.23 8.09 16 46 H 0.02 0.50 8.08 -51.93 -0.42 0.08 16 47 H 0.10 2.87 6.08 -51.93 -0.32 2.56 16 48 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 49 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 51 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 52 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 411.62 15.07 6.20 6.20 Total: -1.00 -28.99 411.62 -10.92 -39.91 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -9.92 Total: 11.70 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.83 Total: -1.00 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -1.45 Total: -56.59 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.08 Total: -14.98 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -28.99 -10.92 -39.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431191703.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.917 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds