Wall clock time and date at job start Tue Mar 31 2020 10:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 N 1.46497 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.46494 * 120.00357 * 267.00235 * 4 3 2 6 6 C 1.53002 * 109.47174 * 269.99801 * 5 4 3 7 7 C 1.52994 * 109.47447 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47257 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00101 * 169.99773 * 8 7 6 10 10 C 1.46895 * 110.99986 * 293.95209 * 8 7 6 11 11 C 1.34781 * 119.99668 * 86.99586 * 4 3 2 12 12 O 1.21581 * 119.99865 * 185.17028 * 11 4 3 13 13 N 1.34775 * 119.99972 * 5.17697 * 11 4 3 14 14 C 1.46498 * 119.99990 * 175.48924 * 13 11 4 15 15 C 1.53009 * 109.47068 * 183.76048 * 14 13 11 16 16 C 1.50697 * 115.54732 * 307.15004 * 15 14 13 17 17 H 1.08001 * 119.99902 * 143.79247 * 16 15 14 18 18 C 1.37875 * 120.00140 * 323.78666 * 16 15 14 19 19 N 1.31516 * 120.00300 * 350.96239 * 18 16 15 20 20 Si 1.86800 * 120.00017 * 170.95428 * 18 16 15 21 21 H 1.48501 * 109.47298 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47243 * 120.00540 * 20 18 16 23 23 H 1.48505 * 109.47297 * 240.00557 * 20 18 16 24 24 C 1.52993 * 117.49766 * 161.47922 * 15 14 13 25 25 C 1.53000 * 117.49633 * 92.82054 * 15 14 13 26 26 H 1.08993 * 109.47268 * 59.99672 * 1 2 3 27 27 H 1.09001 * 109.47493 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47043 * 299.99126 * 1 2 3 29 29 H 1.08998 * 109.46815 * 240.00078 * 2 1 3 30 30 H 1.08998 * 109.47139 * 120.00795 * 2 1 3 31 31 H 1.09011 * 109.46812 * 60.00307 * 3 2 1 32 32 H 1.08993 * 109.47220 * 300.00357 * 3 2 1 33 33 H 1.08997 * 109.47411 * 29.99899 * 5 4 3 34 34 H 1.09000 * 109.47214 * 149.99784 * 5 4 3 35 35 H 1.09004 * 109.46905 * 299.99955 * 6 5 4 36 36 H 1.09000 * 109.47065 * 59.99891 * 6 5 4 37 37 H 1.09004 * 109.46784 * 299.99726 * 7 6 5 38 38 H 1.09000 * 109.47325 * 59.99747 * 7 6 5 39 39 H 1.09003 * 109.47026 * 59.99650 * 9 8 7 40 40 H 1.09003 * 109.47329 * 179.97438 * 9 8 7 41 41 H 1.09000 * 109.46980 * 299.99959 * 9 8 7 42 42 H 1.09001 * 109.47558 * 59.99663 * 10 8 7 43 43 H 1.09001 * 109.47688 * 179.97438 * 10 8 7 44 44 H 1.09001 * 109.47126 * 299.99700 * 10 8 7 45 45 H 0.96998 * 119.99983 * 355.21001 * 13 11 4 46 46 H 1.09002 * 109.47212 * 303.75582 * 14 13 11 47 47 H 1.09001 * 109.47513 * 63.76063 * 14 13 11 48 48 H 0.96996 * 120.00443 * 185.02298 * 19 18 16 49 49 H 1.09000 * 117.50036 * 0.02562 * 24 15 14 50 50 H 1.09002 * 117.50247 * 145.01917 * 24 15 14 51 51 H 1.09004 * 117.49437 * 214.97919 * 25 15 14 52 52 H 1.08993 * 117.50395 * 359.97421 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.5090 1.2678 6 6 4.4919 2.9727 1.6333 7 6 5.2570 3.0422 2.9564 8 7 5.5012 4.4476 3.3076 9 6 6.0194 4.5656 4.6771 10 6 6.4115 5.0805 2.3439 11 6 4.1793 1.3811 -1.1648 12 8 5.3914 1.2862 -1.1614 13 7 3.5100 1.4251 -2.3337 14 6 4.2473 1.4581 -3.5992 15 6 3.2612 1.5997 -4.7605 16 6 2.1448 0.5879 -4.7921 17 1 1.1596 0.8810 -5.1238 18 6 2.3810 -0.7119 -4.3976 19 7 3.6109 -1.1152 -4.1645 20 14 0.9541 -1.9001 -4.1940 21 1 -0.3184 -1.2052 -4.5150 22 1 1.1342 -3.0522 -5.1135 23 1 0.9121 -2.3878 -2.7919 24 6 3.8148 2.0829 -6.1024 25 6 2.9470 3.0141 -5.2521 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.6477 1.0358 2.0532 34 1 5.1894 0.9890 1.1650 35 1 5.0813 3.4459 0.8479 36 1 3.5395 3.4927 1.7361 37 1 4.6679 2.5689 3.7420 38 1 6.2094 2.5223 2.8532 39 1 6.9575 4.0167 4.7591 40 1 6.1918 5.6162 4.9110 41 1 5.2937 4.1515 5.3770 42 1 5.9710 5.0407 1.3477 43 1 6.5749 6.1203 2.6272 44 1 7.3638 4.5503 2.3415 45 1 2.5400 1.4307 -2.3373 46 1 4.9321 2.3062 -3.5987 47 1 4.8137 0.5339 -3.7141 48 1 3.7849 -2.0469 -3.9581 49 1 4.8816 2.2997 -6.1581 50 1 3.3713 1.6694 -7.0082 51 1 1.9328 3.2127 -5.5987 52 1 3.4424 3.8438 -4.7480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431191703.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:28 Heat of formation + Delta-G solvation = -23.524791 kcal Electronic energy + Delta-G solvation = -27602.131701 eV Core-core repulsion = 24022.776325 eV Total energy + Delta-G solvation = -3579.355376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16580 -38.85919 -38.43881 -37.17234 -35.08830 -34.22140 -34.04528 -32.27427 -28.51935 -28.21617 -27.61580 -27.26420 -25.94433 -23.62739 -22.95427 -22.71083 -21.76975 -21.13925 -20.41395 -19.13095 -18.01864 -17.39337 -16.78478 -16.58197 -16.41662 -16.19122 -15.79272 -15.62270 -15.51795 -15.17271 -14.96268 -14.84257 -14.41623 -14.16186 -13.63442 -13.52377 -13.34157 -13.27132 -13.09147 -12.92376 -12.85861 -12.78767 -12.63220 -12.56075 -12.44291 -12.27420 -12.17269 -12.11725 -12.03871 -11.67299 -11.51491 -11.43372 -11.03644 -10.94435 -10.63647 -10.12865 -9.84722 -9.35387 -9.27590 -7.99632 -6.17335 1.38920 1.44751 1.53457 1.87632 2.34538 2.41884 2.97260 3.05097 3.30428 3.67634 3.93473 3.99625 4.07727 4.13196 4.22194 4.26944 4.38058 4.41522 4.45586 4.49119 4.54324 4.56542 4.63713 4.66207 4.71339 4.76644 4.77824 4.80625 4.81827 4.94843 4.96838 4.97889 5.01750 5.08844 5.15031 5.16605 5.26626 5.30053 5.31275 5.42677 5.53766 5.61164 5.76004 5.94214 5.95438 6.02763 6.10234 6.15147 6.39949 6.83195 7.28133 7.46397 7.81869 8.94104 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.003923 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.351034 B = 7135.478114 C = 8283.388154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.114 3.886 4 N -0.628 5.628 5 C 0.137 3.863 6 C -0.117 4.117 7 C 0.062 3.938 8 N -0.559 5.559 9 C 0.024 3.976 10 C 0.022 3.978 11 C 0.694 3.306 12 O -0.649 6.649 13 N -0.703 5.703 14 C 0.194 3.806 15 C 0.012 3.988 16 C -0.505 4.505 17 H 0.060 0.940 18 C 0.042 3.958 19 N -0.890 5.890 20 Si 0.937 3.063 21 H -0.261 1.261 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.198 4.198 25 C -0.185 4.185 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.020 0.980 45 H 0.401 0.599 46 H 0.014 0.986 47 H 0.066 0.934 48 H 0.256 0.744 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.086 0.914 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 7.917 16.626 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.009 4.009 4 N -0.364 5.364 5 C 0.013 3.987 6 C -0.157 4.157 7 C -0.066 4.066 8 N -0.283 5.283 9 C -0.124 4.124 10 C -0.126 4.126 11 C 0.395 3.605 12 O -0.532 6.532 13 N -0.356 5.356 14 C 0.070 3.930 15 C 0.012 3.988 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.161 4.161 19 N -0.527 5.527 20 Si 0.763 3.237 21 H -0.184 1.184 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.237 4.237 25 C -0.222 4.222 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.039 0.961 45 H 0.237 0.763 46 H 0.033 0.967 47 H 0.084 0.916 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.104 0.896 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.845 7.972 16.710 18.731 hybrid contribution 0.239 -1.430 -0.646 1.587 sum -2.607 6.542 16.064 17.540 Atomic orbital electron populations 1.21678 0.93516 1.02080 1.03005 1.21933 0.97549 0.97280 1.01329 1.21708 0.78121 0.96781 1.04254 1.47135 1.06888 1.78042 1.04376 1.21284 0.96935 0.96599 0.83881 1.21828 1.01041 0.96422 0.96361 1.22027 0.98803 0.88447 0.97328 1.62009 1.46800 1.15891 1.03577 1.22443 0.98622 1.02567 0.88770 1.22416 0.93897 0.99832 0.96486 1.16192 0.84872 0.77815 0.81572 1.90780 1.14375 1.60855 1.87225 1.44931 1.10051 1.76650 1.03926 1.20445 0.92621 0.98728 0.81246 1.19221 0.96364 0.92274 0.90965 1.20676 0.95017 0.93921 1.44659 0.92209 1.25517 0.97003 0.99409 0.94128 1.70051 1.20099 1.15731 1.46790 0.85828 0.80899 0.79201 0.77761 1.18448 1.21718 1.20340 1.22921 0.97396 1.06307 0.97035 1.22940 0.99785 0.93977 1.05495 0.92770 0.93034 0.89815 0.95421 0.91062 0.86663 0.91365 0.87649 0.92732 0.94494 0.90335 0.88599 0.95607 0.95744 0.90515 0.90164 0.92470 0.90120 0.96100 0.76255 0.96744 0.91635 0.93434 0.90936 0.90466 0.89574 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.14 -3.88 6.24 30.59 0.19 -3.69 16 3 C 0.11 2.95 5.18 86.38 0.45 3.40 16 4 N -0.63 -20.58 2.48 -839.86 -2.08 -22.66 16 5 C 0.14 3.68 5.43 86.38 0.47 4.15 16 6 C -0.12 -2.87 5.46 30.59 0.17 -2.70 16 7 C 0.06 1.27 4.96 86.30 0.43 1.70 16 8 N -0.56 -11.26 5.02 -948.85 -4.76 -16.03 16 9 C 0.02 0.35 9.57 127.69 1.22 1.58 16 10 C 0.02 0.46 9.32 127.69 1.19 1.65 16 11 C 0.69 30.53 8.25 179.05 1.48 32.01 16 12 O -0.65 -33.75 15.90 -3.97 -0.06 -33.81 16 13 N -0.70 -31.54 5.16 -478.53 -2.47 -34.00 16 14 C 0.19 9.69 4.75 86.38 0.41 10.10 16 15 C 0.01 0.59 2.00 -52.93 -0.11 0.49 16 16 C -0.51 -25.57 8.22 25.60 0.21 -25.36 16 17 H 0.06 2.99 7.83 -2.91 -0.02 2.97 16 18 C 0.04 2.14 5.16 84.65 0.44 2.58 16 19 N -0.89 -49.28 10.76 21.45 0.23 -49.05 16 20 Si 0.94 40.88 29.55 68.60 2.03 42.91 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 C -0.20 -8.72 9.96 30.62 0.30 -8.42 16 25 C -0.18 -7.51 9.92 30.62 0.30 -7.21 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.12 2.10 8.05 -2.38 -0.02 2.08 16 32 H 0.07 1.89 6.39 -2.39 -0.02 1.87 16 33 H 0.11 2.07 8.07 -2.39 -0.02 2.05 16 34 H 0.05 1.77 7.36 -2.39 -0.02 1.76 16 35 H 0.04 1.14 6.55 -2.38 -0.02 1.12 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 1.53 8.06 -2.38 -0.02 1.51 16 38 H 0.03 0.58 8.12 -2.39 -0.02 0.56 16 39 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 41 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 42 H 0.06 1.37 6.47 -2.39 -0.02 1.36 16 43 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 44 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.40 17.02 5.64 -92.71 -0.52 16.50 16 46 H 0.01 0.72 8.08 -2.39 -0.02 0.70 16 47 H 0.07 3.80 6.08 -2.39 -0.01 3.79 16 48 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 49 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 50 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 51 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 52 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -65.01 411.62 1.09 -63.92 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: 0.34 Total: 40.96 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 7.87 Total: 7.77 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -9.08 Total: -121.74 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.06 Total: -33.81 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -65.01 1.09 -63.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431191703.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.390 kcal (2) G-P(sol) polarization free energy of solvation -65.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds