Wall clock time and date at job start Tue Mar 31 2020 10:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46968 * 2 1 4 4 H 1.09003 * 109.46646 * 55.90592 * 3 2 1 5 5 C 1.52999 * 109.47284 * 295.91065 * 3 2 1 6 6 N 1.46898 * 109.47250 * 175.90748 * 3 2 1 7 7 C 1.46951 * 110.99892 * 303.01583 * 6 3 2 8 8 C 1.53055 * 109.36269 * 176.81034 * 7 6 3 9 9 N 1.46952 * 109.36140 * 58.40392 * 8 7 6 10 10 C 1.46904 * 110.99719 * 176.80722 * 9 8 7 11 11 H 1.09002 * 109.46881 * 178.79483 * 10 9 8 12 12 C 1.53003 * 109.46757 * 58.80194 * 10 9 8 13 13 C 1.50694 * 109.47658 * 298.79851 * 10 9 8 14 14 O 1.21281 * 119.99497 * 5.45132 * 13 10 9 15 15 N 1.34769 * 120.00458 * 185.44499 * 13 10 9 16 16 C 1.46502 * 119.99726 * 6.29285 * 15 13 10 17 17 C 1.46502 * 120.00233 * 186.29465 * 15 13 10 18 18 C 1.50698 * 109.47011 * 90.00401 * 17 15 13 19 19 H 1.08003 * 120.00272 * 359.97438 * 18 17 15 20 20 C 1.37876 * 119.99669 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99950 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00197 * 359.97438 * 20 18 17 23 23 H 1.48492 * 109.47213 * 90.00709 * 22 20 18 24 24 H 1.48507 * 109.47224 * 210.00454 * 22 20 18 25 25 H 1.48499 * 109.47256 * 329.99948 * 22 20 18 26 26 C 1.46951 * 110.88070 * 300.67538 * 9 8 7 27 27 C 1.46952 * 110.99770 * 179.21835 * 6 3 2 28 28 H 1.09007 * 109.46731 * 178.17610 * 1 2 3 29 29 H 1.08997 * 109.47352 * 58.18230 * 1 2 3 30 30 H 1.08994 * 109.47197 * 298.17700 * 1 2 3 31 31 H 1.08996 * 109.47473 * 120.00286 * 2 1 3 32 32 H 1.09006 * 109.47420 * 240.00801 * 2 1 3 33 33 H 1.09004 * 109.47493 * 59.99498 * 5 3 2 34 34 H 1.09000 * 109.47574 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.47038 * 300.00329 * 5 3 2 36 36 H 1.08999 * 109.49317 * 296.78196 * 7 6 3 37 37 H 1.09007 * 109.48945 * 56.84804 * 7 6 3 38 38 H 1.08999 * 109.48775 * 298.43318 * 8 7 6 39 39 H 1.09007 * 109.48501 * 178.36978 * 8 7 6 40 40 H 1.09002 * 109.47142 * 306.77802 * 12 10 9 41 41 H 1.09000 * 109.47534 * 66.78212 * 12 10 9 42 42 H 1.09003 * 109.46778 * 186.78347 * 12 10 9 43 43 H 1.09010 * 109.46799 * 88.78454 * 16 15 13 44 44 H 1.08998 * 109.47052 * 208.77950 * 16 15 13 45 45 H 1.08998 * 109.47233 * 328.78540 * 16 15 13 46 46 H 1.09005 * 109.47098 * 210.00224 * 17 15 13 47 47 H 1.09000 * 109.47237 * 329.99767 * 17 15 13 48 48 H 0.96999 * 120.00039 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.49317 * 299.35376 * 26 9 8 50 50 H 1.09007 * 109.48945 * 179.28768 * 26 9 8 51 51 H 1.09007 * 109.49133 * 303.15157 * 27 6 3 52 52 H 1.08999 * 109.49395 * 63.22265 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6179 1.9771 0.8511 5 6 1.6157 2.1335 -1.2975 6 7 3.5056 1.4438 0.0988 7 6 3.9531 0.7243 1.2995 8 6 5.4828 0.6798 1.3238 9 7 6.0105 2.0512 1.3079 10 6 7.4762 2.0524 1.4069 11 1 7.8418 3.0787 1.3713 12 6 8.0667 1.2599 0.2389 13 6 7.8925 1.4155 2.7076 14 8 7.0587 0.9129 3.4308 15 7 9.1913 1.4044 3.0672 16 6 10.1797 2.1295 2.2650 17 6 9.6148 0.6671 4.2602 18 6 9.9693 -0.7467 3.8775 19 1 9.8870 -1.0644 2.8486 20 6 10.3978 -1.6348 4.8412 21 7 10.7067 -2.8688 4.5073 22 14 10.5394 -1.0855 6.6209 23 1 9.2526 -1.3330 7.3193 24 1 11.6214 -1.8512 7.2907 25 1 10.8573 0.3643 6.6677 26 6 5.5630 2.7707 0.1073 27 6 4.0333 2.8153 0.0830 28 1 -0.3633 -1.0272 -0.0327 29 1 -0.3634 0.5418 -0.8732 30 1 -0.3633 0.4852 0.9058 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 0.5281 2.1326 -1.3709 34 1 1.9786 3.1614 -1.2973 35 1 2.0376 1.5990 -2.1486 36 1 3.5901 1.2397 2.1887 37 1 3.5599 -0.2922 1.2820 38 1 5.8448 0.1406 0.4484 39 1 5.8174 0.1717 2.2283 40 1 7.6099 0.2709 0.2030 41 1 7.8679 1.7861 -0.6948 42 1 9.1433 1.1581 0.3764 43 1 10.2577 3.1555 2.6250 44 1 11.1491 1.6391 2.3526 45 1 9.8675 2.1337 1.2206 46 1 10.4860 1.1543 4.6982 47 1 8.8023 0.6541 4.9868 48 1 11.0085 -3.4936 5.1852 49 1 5.9260 2.2554 -0.7820 50 1 5.9562 3.7872 0.1248 51 1 3.6987 3.3233 -0.8216 52 1 3.6713 3.3544 0.9584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451824257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:32 Heat of formation + Delta-G solvation = -4.053371 kcal Electronic energy + Delta-G solvation = -27761.191198 eV Core-core repulsion = 24182.680166 eV Total energy + Delta-G solvation = -3578.511031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.20351 -38.87504 -36.70995 -34.94875 -33.76942 -32.53663 -31.10454 -30.65264 -28.96760 -28.10231 -26.40262 -25.82925 -24.55630 -23.49158 -22.85579 -21.69215 -20.16828 -19.43528 -18.42092 -16.96139 -16.63775 -16.37352 -15.71383 -15.28484 -14.97385 -14.75440 -14.62376 -14.37899 -14.23603 -14.07747 -13.79278 -13.46869 -13.13689 -12.87375 -12.68443 -12.63158 -12.36707 -12.27321 -12.09129 -11.86555 -11.76488 -11.59912 -11.56709 -11.45410 -11.26716 -11.14532 -10.86027 -10.78902 -10.71614 -10.50608 -10.42395 -10.29074 -10.12044 -9.53839 -8.79364 -8.59126 -8.35343 -8.01114 -7.65468 -6.09432 -4.08294 3.29583 3.34415 3.35798 3.37953 3.64926 3.79482 4.22949 4.39699 4.64061 4.74303 4.88738 4.93115 5.10351 5.14728 5.20820 5.24020 5.26056 5.27811 5.32909 5.34863 5.37461 5.46574 5.51596 5.56641 5.58587 5.68568 5.73892 5.77486 5.81750 5.83856 5.85819 5.88178 5.94523 5.99172 6.09401 6.13367 6.15173 6.22397 6.40135 6.48804 6.70259 6.94536 7.02776 7.03418 7.23057 7.32405 7.38505 7.61005 8.28067 8.46957 8.92403 9.02261 9.51284 11.03814 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.003240 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.398906 B = 8640.348180 C = 9508.170674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.080 3.920 4 H 0.038 0.962 5 C -0.146 4.146 6 N -0.537 5.537 7 C 0.059 3.941 8 C 0.039 3.961 9 N -0.516 5.516 10 C 0.066 3.934 11 H 0.098 0.902 12 C -0.190 4.190 13 C 0.518 3.482 14 O -0.527 6.527 15 N -0.597 5.597 16 C 0.070 3.930 17 C 0.215 3.785 18 C -0.529 4.529 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.055 3.945 27 C 0.058 3.942 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.029 0.971 47 H 0.038 0.962 48 H 0.264 0.736 49 H 0.044 0.956 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 12.558 -12.396 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.028 4.028 4 H 0.056 0.944 5 C -0.204 4.204 6 N -0.262 5.262 7 C -0.069 4.069 8 C -0.088 4.088 9 N -0.240 5.240 10 C -0.046 4.046 11 H 0.116 0.884 12 C -0.249 4.249 13 C 0.304 3.696 14 O -0.404 6.404 15 N -0.329 5.329 16 C -0.074 4.074 17 C 0.095 3.905 18 C -0.568 4.568 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.073 4.073 27 C -0.070 4.070 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.093 0.907 51 H 0.097 0.903 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.133 12.118 -11.906 22.098 hybrid contribution 0.309 0.167 0.867 0.935 sum -13.824 12.285 -11.039 21.537 Atomic orbital electron populations 1.21811 0.95735 1.01684 1.01711 1.21651 0.95397 0.95954 1.02925 1.21620 0.87454 0.96381 0.97317 0.94420 1.21931 1.00784 1.00206 0.97460 1.62247 1.08863 1.15293 1.39827 1.22219 0.95557 0.98709 0.90411 1.22661 0.93297 0.89244 1.03621 1.62113 1.07226 1.16932 1.37748 1.21602 0.88755 1.00374 0.93865 0.88386 1.22585 1.02990 1.01583 0.97725 1.20076 0.82479 0.80057 0.86987 1.90540 1.50141 1.46333 1.53373 1.47762 1.06059 1.50456 1.28659 1.21970 0.94159 0.95664 0.95617 1.19663 0.95289 0.92095 0.83476 1.21332 1.44741 0.93635 0.97049 0.90799 1.24854 0.94679 0.94665 0.98791 1.69898 1.45259 1.04361 1.34097 0.86844 0.78271 0.79130 0.85412 1.19892 1.21117 1.19062 1.22178 0.94717 0.98583 0.91835 1.22158 0.94455 0.89668 1.00741 0.92633 0.92508 0.92948 0.91490 0.91183 0.92183 0.92710 0.91859 0.94121 0.90132 0.94393 0.86309 0.91300 0.91934 0.90173 0.93715 0.90578 0.91071 0.95317 0.94412 0.92567 0.93805 0.90719 0.90311 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.69 37.16 0.36 -0.82 16 2 C -0.12 -1.16 5.22 -26.73 -0.14 -1.30 16 3 C 0.08 0.81 2.15 -67.71 -0.15 0.67 16 4 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 5 C -0.15 -1.22 8.68 37.16 0.32 -0.89 16 6 N -0.54 -6.44 4.58 -226.48 -1.04 -7.48 16 7 C 0.06 0.82 5.26 -3.77 -0.02 0.80 16 8 C 0.04 0.64 4.72 -3.77 -0.02 0.62 16 9 N -0.52 -7.84 4.52 -227.87 -1.03 -8.87 16 10 C 0.07 1.01 1.95 -68.86 -0.13 0.88 16 11 H 0.10 1.29 7.76 -51.93 -0.40 0.89 16 12 C -0.19 -2.63 8.07 37.16 0.30 -2.34 16 13 C 0.52 10.54 6.77 -10.99 -0.07 10.46 16 14 O -0.53 -12.73 13.24 5.56 0.07 -12.66 16 15 N -0.60 -12.25 2.86 -182.95 -0.52 -12.77 16 16 C 0.07 1.06 9.81 59.85 0.59 1.65 16 17 C 0.22 5.28 4.27 -5.19 -0.02 5.25 16 18 C -0.53 -15.07 9.94 -34.44 -0.34 -15.42 16 19 H 0.07 2.30 8.06 -52.48 -0.42 1.87 16 20 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 21 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 22 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 26 C 0.06 0.66 5.25 -3.77 -0.02 0.64 16 27 C 0.06 0.65 5.30 -3.77 -0.02 0.63 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 6.45 -51.93 -0.33 0.06 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.69 6.06 -51.93 -0.31 0.38 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.43 6.50 -51.93 -0.34 0.09 16 34 H 0.05 0.43 6.32 -51.93 -0.33 0.11 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.07 5.99 -51.93 -0.31 0.76 16 38 H 0.04 0.62 6.32 -51.93 -0.33 0.29 16 39 H 0.12 2.39 5.21 -51.92 -0.27 2.12 16 40 H 0.07 1.09 6.10 -51.93 -0.32 0.77 16 41 H 0.06 0.71 6.94 -51.93 -0.36 0.35 16 42 H 0.08 1.11 5.29 -51.93 -0.27 0.84 16 43 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 44 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 45 H 0.07 0.91 4.13 -51.93 -0.21 0.69 16 46 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 47 H 0.04 0.99 6.77 -51.93 -0.35 0.64 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.04 0.53 6.75 -51.93 -0.35 0.18 16 50 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 51 H 0.08 0.74 6.12 -51.92 -0.32 0.42 16 52 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -32.73 377.46 -9.18 -41.92 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -9.00 Total: 1.16 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 0.54 Total: 2.84 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -1.82 Total: -55.91 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.66 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.73 -9.18 -41.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451824257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.865 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds