Wall clock time and date at job start Tue Mar 31 2020 10:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46968 * 2 1 4 4 H 1.09003 * 109.46646 * 55.90592 * 3 2 1 5 5 C 1.52999 * 109.47284 * 295.91065 * 3 2 1 6 6 N 1.46898 * 109.47250 * 175.90748 * 3 2 1 7 7 C 1.46951 * 110.99892 * 303.01583 * 6 3 2 8 8 C 1.53055 * 109.36269 * 176.81034 * 7 6 3 9 9 N 1.46952 * 109.36140 * 58.40392 * 8 7 6 10 10 C 1.46904 * 110.99719 * 176.80722 * 9 8 7 11 11 H 1.09002 * 109.46881 * 178.79483 * 10 9 8 12 12 C 1.53003 * 109.46757 * 58.80194 * 10 9 8 13 13 C 1.50694 * 109.47658 * 298.79851 * 10 9 8 14 14 O 1.21281 * 119.99497 * 5.45132 * 13 10 9 15 15 N 1.34769 * 120.00458 * 185.44499 * 13 10 9 16 16 C 1.46502 * 119.99726 * 6.29285 * 15 13 10 17 17 C 1.46502 * 120.00233 * 186.29465 * 15 13 10 18 18 C 1.50698 * 109.47011 * 90.00401 * 17 15 13 19 19 H 1.08003 * 120.00272 * 359.97438 * 18 17 15 20 20 C 1.37876 * 119.99669 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99950 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00197 * 359.97438 * 20 18 17 23 23 H 1.48492 * 109.47213 * 90.00709 * 22 20 18 24 24 H 1.48507 * 109.47224 * 210.00454 * 22 20 18 25 25 H 1.48499 * 109.47256 * 329.99948 * 22 20 18 26 26 C 1.46951 * 110.88070 * 300.67538 * 9 8 7 27 27 C 1.46952 * 110.99770 * 179.21835 * 6 3 2 28 28 H 1.09007 * 109.46731 * 178.17610 * 1 2 3 29 29 H 1.08997 * 109.47352 * 58.18230 * 1 2 3 30 30 H 1.08994 * 109.47197 * 298.17700 * 1 2 3 31 31 H 1.08996 * 109.47473 * 120.00286 * 2 1 3 32 32 H 1.09006 * 109.47420 * 240.00801 * 2 1 3 33 33 H 1.09004 * 109.47493 * 59.99498 * 5 3 2 34 34 H 1.09000 * 109.47574 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.47038 * 300.00329 * 5 3 2 36 36 H 1.08999 * 109.49317 * 296.78196 * 7 6 3 37 37 H 1.09007 * 109.48945 * 56.84804 * 7 6 3 38 38 H 1.08999 * 109.48775 * 298.43318 * 8 7 6 39 39 H 1.09007 * 109.48501 * 178.36978 * 8 7 6 40 40 H 1.09002 * 109.47142 * 306.77802 * 12 10 9 41 41 H 1.09000 * 109.47534 * 66.78212 * 12 10 9 42 42 H 1.09003 * 109.46778 * 186.78347 * 12 10 9 43 43 H 1.09010 * 109.46799 * 88.78454 * 16 15 13 44 44 H 1.08998 * 109.47052 * 208.77950 * 16 15 13 45 45 H 1.08998 * 109.47233 * 328.78540 * 16 15 13 46 46 H 1.09005 * 109.47098 * 210.00224 * 17 15 13 47 47 H 1.09000 * 109.47237 * 329.99767 * 17 15 13 48 48 H 0.96999 * 120.00039 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.49317 * 299.35376 * 26 9 8 50 50 H 1.09007 * 109.48945 * 179.28768 * 26 9 8 51 51 H 1.09007 * 109.49133 * 303.15157 * 27 6 3 52 52 H 1.08999 * 109.49395 * 63.22265 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6179 1.9771 0.8511 5 6 1.6157 2.1335 -1.2975 6 7 3.5056 1.4438 0.0988 7 6 3.9531 0.7243 1.2995 8 6 5.4828 0.6798 1.3238 9 7 6.0105 2.0512 1.3079 10 6 7.4762 2.0524 1.4069 11 1 7.8418 3.0787 1.3713 12 6 8.0667 1.2599 0.2389 13 6 7.8925 1.4155 2.7076 14 8 7.0587 0.9129 3.4308 15 7 9.1913 1.4044 3.0672 16 6 10.1797 2.1295 2.2650 17 6 9.6148 0.6671 4.2602 18 6 9.9693 -0.7467 3.8775 19 1 9.8870 -1.0644 2.8486 20 6 10.3978 -1.6348 4.8412 21 7 10.7067 -2.8688 4.5073 22 14 10.5394 -1.0855 6.6209 23 1 9.2526 -1.3330 7.3193 24 1 11.6214 -1.8512 7.2907 25 1 10.8573 0.3643 6.6677 26 6 5.5630 2.7707 0.1073 27 6 4.0333 2.8153 0.0830 28 1 -0.3633 -1.0272 -0.0327 29 1 -0.3634 0.5418 -0.8732 30 1 -0.3633 0.4852 0.9058 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 0.5281 2.1326 -1.3709 34 1 1.9786 3.1614 -1.2973 35 1 2.0376 1.5990 -2.1486 36 1 3.5901 1.2397 2.1887 37 1 3.5599 -0.2922 1.2820 38 1 5.8448 0.1406 0.4484 39 1 5.8174 0.1717 2.2283 40 1 7.6099 0.2709 0.2030 41 1 7.8679 1.7861 -0.6948 42 1 9.1433 1.1581 0.3764 43 1 10.2577 3.1555 2.6250 44 1 11.1491 1.6391 2.3526 45 1 9.8675 2.1337 1.2206 46 1 10.4860 1.1543 4.6982 47 1 8.8023 0.6541 4.9868 48 1 11.0085 -3.4936 5.1852 49 1 5.9260 2.2554 -0.7820 50 1 5.9562 3.7872 0.1248 51 1 3.6987 3.3233 -0.8216 52 1 3.6713 3.3544 0.9584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451824257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:31 Heat of formation + Delta-G solvation = -28.168172 kcal Electronic energy + Delta-G solvation = -27762.236894 eV Core-core repulsion = 24182.680166 eV Total energy + Delta-G solvation = -3579.556728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50709 -40.08736 -37.83828 -36.62741 -34.96148 -34.45365 -32.17889 -31.85155 -30.22592 -29.48213 -27.69532 -26.97580 -25.69593 -24.91488 -23.88610 -23.23014 -21.04425 -20.54208 -19.90935 -19.14180 -17.93087 -17.63279 -17.06938 -16.46146 -16.21271 -16.06926 -15.95329 -15.75953 -15.34478 -15.26448 -15.03951 -14.69359 -14.36712 -14.27487 -13.89039 -13.74902 -13.64464 -13.48694 -13.38232 -13.26806 -12.98979 -12.85968 -12.54904 -12.52687 -12.46074 -12.34872 -12.20441 -12.13472 -11.93980 -11.90727 -11.73973 -11.57084 -11.54719 -11.17458 -10.84021 -10.32303 -9.39211 -9.33427 -9.16132 -8.34958 -6.39726 1.31704 1.35784 1.44096 1.79289 2.23384 2.30088 2.86684 2.98515 2.99744 3.62142 3.84212 3.86452 3.97737 4.04846 4.10619 4.20156 4.27739 4.32589 4.36150 4.40197 4.47440 4.53146 4.58668 4.63129 4.67359 4.67953 4.72862 4.75302 4.83135 4.83833 4.89770 4.94660 4.97097 5.00305 5.02892 5.11526 5.14662 5.15189 5.22564 5.26644 5.40821 5.45348 5.46393 5.64748 5.90907 6.00450 6.21121 6.22041 6.25665 6.61599 6.73752 7.21498 7.45998 8.81788 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.003240 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.398906 B = 8640.348180 C = 9508.170674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.079 3.921 4 H 0.031 0.969 5 C -0.140 4.140 6 N -0.538 5.538 7 C 0.069 3.931 8 C 0.048 3.952 9 N -0.529 5.529 10 C 0.077 3.923 11 H 0.134 0.866 12 C -0.182 4.182 13 C 0.504 3.496 14 O -0.577 6.577 15 N -0.606 5.606 16 C 0.063 3.937 17 C 0.224 3.776 18 C -0.534 4.534 19 H 0.030 0.970 20 C 0.012 3.988 21 N -0.945 5.945 22 Si 0.946 3.054 23 H -0.278 1.278 24 H -0.275 1.275 25 H -0.239 1.239 26 C 0.055 3.945 27 C 0.058 3.942 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.022 0.978 37 H 0.080 0.920 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.049 0.951 47 H 0.017 0.983 48 H 0.268 0.732 49 H 0.049 0.951 50 H 0.101 0.899 51 H 0.106 0.894 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.118 15.699 -13.668 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.029 4.029 4 H 0.049 0.951 5 C -0.197 4.197 6 N -0.264 5.264 7 C -0.059 4.059 8 C -0.080 4.080 9 N -0.254 5.254 10 C -0.035 4.035 11 H 0.151 0.849 12 C -0.240 4.240 13 C 0.293 3.707 14 O -0.457 6.457 15 N -0.338 5.338 16 C -0.078 4.078 17 C 0.101 3.899 18 C -0.572 4.572 19 H 0.049 0.951 20 C -0.186 4.186 21 N -0.585 5.585 22 Si 0.769 3.231 23 H -0.204 1.204 24 H -0.200 1.200 25 H -0.162 1.162 26 C -0.072 4.072 27 C -0.070 4.070 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.066 0.934 47 H 0.035 0.965 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.120 0.880 51 H 0.124 0.876 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.464 15.305 -13.225 24.867 hybrid contribution 0.384 -0.854 1.175 1.502 sum -14.081 14.451 -12.050 23.501 Atomic orbital electron populations 1.21778 0.94186 1.02226 1.02281 1.21637 0.96751 0.95558 1.01932 1.21719 0.86110 0.96795 0.98288 0.95113 1.21889 1.01772 1.00185 0.95854 1.62285 1.10243 1.15849 1.38020 1.22013 0.94067 0.99003 0.90842 1.22360 0.94708 0.89956 1.00999 1.62091 1.07125 1.16116 1.40037 1.21595 0.89172 1.01662 0.91026 0.84855 1.22527 1.02467 1.00373 0.98658 1.21118 0.81895 0.79428 0.88295 1.90530 1.51536 1.48369 1.55214 1.47878 1.07398 1.50336 1.28189 1.22276 0.92432 0.96496 0.96625 1.19313 0.95013 0.90494 0.85049 1.21548 1.44432 0.96084 0.95180 0.95142 1.25819 0.94234 0.94577 1.03961 1.70046 1.46645 1.05848 1.35933 0.85734 0.78150 0.80287 0.78889 1.20384 1.19965 1.16228 1.22329 0.95171 0.99393 0.90290 1.22255 0.94102 0.89080 1.01584 0.92227 0.91195 0.92998 0.93122 0.91537 0.90697 0.91938 0.92033 0.95931 0.90190 0.94902 0.90862 0.94094 0.88350 0.90185 0.90343 0.91433 0.88361 0.93352 0.96511 0.92283 0.93256 0.88049 0.87602 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.69 71.98 0.70 -1.41 16 2 C -0.12 -2.25 5.22 30.60 0.16 -2.09 16 3 C 0.08 1.50 2.15 44.92 0.10 1.59 16 4 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 5 C -0.14 -1.95 8.68 71.98 0.62 -1.33 16 6 N -0.54 -12.44 4.58 -870.45 -3.98 -16.42 16 7 C 0.07 2.01 5.26 86.31 0.45 2.46 16 8 C 0.05 1.62 4.72 86.31 0.41 2.03 16 9 N -0.53 -15.64 4.52 -874.85 -3.96 -19.60 16 10 C 0.08 2.25 1.95 44.17 0.09 2.33 16 11 H 0.13 2.97 7.76 -2.39 -0.02 2.95 16 12 C -0.18 -4.74 8.07 71.98 0.58 -4.16 16 13 C 0.50 20.76 6.77 87.66 0.59 21.35 16 14 O -0.58 -29.26 13.24 -3.03 -0.04 -29.30 16 15 N -0.61 -24.74 2.86 -851.13 -2.43 -27.17 16 16 C 0.06 1.79 9.81 127.77 1.25 3.04 16 17 C 0.22 11.05 4.27 85.63 0.37 11.42 16 18 C -0.53 -31.54 9.94 25.60 0.25 -31.29 16 19 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 20 C 0.01 0.72 5.47 84.65 0.46 1.18 16 21 N -0.94 -60.01 13.96 21.45 0.30 -59.72 16 22 Si 0.95 45.06 27.47 68.60 1.88 46.94 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 26 C 0.06 1.16 5.25 86.31 0.45 1.62 16 27 C 0.06 1.16 5.30 86.31 0.46 1.62 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.07 0.82 6.45 -2.39 -0.02 0.80 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 1.09 6.06 -2.39 -0.01 1.08 16 32 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.07 0.84 6.50 -2.38 -0.02 0.82 16 34 H 0.06 0.78 6.32 -2.39 -0.02 0.77 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 2.28 5.99 -2.38 -0.01 2.26 16 38 H 0.03 1.12 6.32 -2.39 -0.02 1.11 16 39 H 0.07 3.20 5.21 -2.38 -0.01 3.19 16 40 H 0.04 1.30 6.10 -2.39 -0.01 1.29 16 41 H 0.10 1.88 6.94 -2.39 -0.02 1.86 16 42 H 0.08 2.08 5.29 -2.39 -0.01 2.07 16 43 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 45 H 0.10 2.22 4.13 -2.39 -0.01 2.21 16 46 H 0.05 2.20 7.13 -2.38 -0.02 2.18 16 47 H 0.02 0.90 6.77 -2.39 -0.02 0.88 16 48 H 0.27 15.85 8.31 -92.71 -0.77 15.07 16 49 H 0.05 1.01 6.75 -2.39 -0.02 0.99 16 50 H 0.10 1.63 8.12 -2.38 -0.02 1.61 16 51 H 0.11 1.59 6.12 -2.38 -0.01 1.58 16 52 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -76.49 377.46 -0.45 -76.94 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.84 Total: 19.95 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 6.95 Total: 8.38 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -10.07 Total: -122.90 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.04 Total: -29.30 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -76.49 -0.45 -76.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451824257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.769 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds