Wall clock time and date at job start Tue Mar 31 2020 10:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47177 * 2 1 4 4 N 1.46895 * 109.47675 * 120.00698 * 2 1 3 5 5 C 1.48534 * 111.00186 * 179.97438 * 4 2 1 6 6 C 1.54941 * 103.22549 * 200.27944 * 5 4 2 7 7 C 1.54591 * 102.92354 * 37.40884 * 6 5 4 8 8 H 1.09005 * 110.39343 * 219.08627 * 7 6 5 9 9 N 1.46497 * 110.31035 * 96.95992 * 7 6 5 10 10 C 1.46491 * 120.00326 * 304.28515 * 9 7 6 11 11 C 1.34785 * 119.99583 * 124.28246 * 9 7 6 12 12 O 1.21586 * 120.00184 * 0.02562 * 11 9 7 13 13 N 1.34780 * 119.99371 * 180.02562 * 11 9 7 14 14 C 1.46497 * 119.99458 * 180.02562 * 13 11 9 15 15 C 1.53005 * 109.46906 * 179.97438 * 14 13 11 16 16 C 1.52991 * 109.47176 * 299.99942 * 15 14 13 17 17 C 1.53000 * 109.46935 * 59.99983 * 15 14 13 18 18 C 1.50704 * 109.47161 * 179.97438 * 15 14 13 19 19 H 1.08001 * 119.99836 * 354.79288 * 18 15 14 20 20 C 1.37876 * 119.99988 * 174.78470 * 18 15 14 21 21 N 1.31513 * 119.99768 * 199.26925 * 20 18 15 22 22 Si 1.86797 * 119.99892 * 19.27002 * 20 18 15 23 23 H 1.48500 * 109.47002 * 84.32420 * 22 20 18 24 24 H 1.48499 * 109.47078 * 204.32472 * 22 20 18 25 25 H 1.48503 * 109.47364 * 324.32789 * 22 20 18 26 26 C 1.47897 * 111.00135 * 62.59035 * 4 2 1 27 27 H 1.08995 * 109.47370 * 59.99500 * 1 2 3 28 28 H 1.09003 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46806 * 299.99483 * 1 2 3 30 30 H 1.09003 * 109.47310 * 240.00520 * 2 1 3 31 31 H 1.09000 * 109.47679 * 185.80806 * 3 2 1 32 32 H 1.09003 * 109.47393 * 305.80733 * 3 2 1 33 33 H 1.09008 * 109.46888 * 65.80573 * 3 2 1 34 34 H 1.09003 * 110.66565 * 318.70315 * 5 4 2 35 35 H 1.08996 * 110.67529 * 81.66863 * 5 4 2 36 36 H 1.09006 * 110.71781 * 279.04943 * 6 5 4 37 37 H 1.09000 * 110.72254 * 155.77157 * 6 5 4 38 38 H 1.09001 * 109.47334 * 89.99829 * 10 9 7 39 39 H 1.09005 * 109.47069 * 330.00273 * 10 9 7 40 40 H 1.09001 * 109.47566 * 210.00010 * 10 9 7 41 41 H 0.96992 * 120.00284 * 359.97438 * 13 11 9 42 42 H 1.09002 * 109.47107 * 299.99622 * 14 13 11 43 43 H 1.08995 * 109.47335 * 60.00045 * 14 13 11 44 44 H 1.09001 * 109.47328 * 67.93267 * 16 15 14 45 45 H 1.09007 * 109.47201 * 187.92530 * 16 15 14 46 46 H 1.09000 * 109.47554 * 307.93142 * 16 15 14 47 47 H 1.09013 * 109.46962 * 60.00193 * 17 15 14 48 48 H 1.09004 * 109.47074 * 179.97438 * 17 15 14 49 49 H 1.08996 * 109.47497 * 300.00128 * 17 15 14 50 50 H 0.97005 * 119.99553 * 180.02562 * 21 20 18 51 51 H 1.08993 * 109.91984 * 26.49821 * 26 4 2 52 52 H 1.09000 * 109.91634 * 265.20140 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6926 1.1993 5 6 3.5046 -0.7129 1.2332 6 6 3.8211 -1.8776 2.2048 7 6 2.7282 -2.9172 1.8659 8 1 2.3669 -3.3985 2.7748 9 7 3.2512 -3.9194 0.9342 10 6 3.8354 -3.4992 -0.3417 11 6 3.1948 -5.2283 1.2511 12 8 2.7096 -5.5772 2.3099 13 7 3.6765 -6.1503 0.3941 14 6 3.6147 -7.5730 0.7382 15 6 4.2229 -8.3991 -0.3970 16 6 3.4366 -8.1516 -1.6858 17 6 5.6820 -7.9869 -0.6026 18 6 4.1600 -9.8626 -0.0428 19 1 3.8073 -10.1677 0.9313 20 6 4.5526 -10.8119 -0.9623 21 7 4.1599 -12.0598 -0.8276 22 14 5.6422 -10.3256 -2.3995 23 1 7.0636 -10.3393 -1.9699 24 1 5.4524 -11.2896 -3.5130 25 1 5.2770 -8.9613 -2.8583 26 6 1.5973 -2.1099 1.2025 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1250 1.4443 -0.1040 32 1 1.5943 1.9855 -0.8334 33 1 1.7640 1.9254 0.9375 34 1 3.9093 -0.9181 0.2421 35 1 3.8936 0.2295 1.6185 36 1 3.7340 -1.5500 3.2408 37 1 4.8136 -2.2837 2.0097 38 1 4.9040 -3.3269 -0.2129 39 1 3.3565 -2.5783 -0.6748 40 1 3.6804 -4.2794 -1.0869 41 1 4.0632 -5.8720 -0.4508 42 1 4.1746 -7.7493 1.6566 43 1 2.5753 -7.8667 0.8842 44 1 3.5976 -7.1261 -2.0184 45 1 3.7776 -8.8416 -2.4577 46 1 2.3745 -8.3106 -1.4997 47 1 6.2422 -8.1633 0.3158 48 1 6.1154 -8.5758 -1.4110 49 1 5.7279 -6.9284 -0.8585 50 1 4.4365 -12.7278 -1.4743 51 1 1.4457 -2.4546 0.1797 52 1 0.6765 -2.2216 1.7751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459229758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:18 Heat of formation + Delta-G solvation = -3.654152 kcal Electronic energy + Delta-G solvation = -27588.812083 eV Core-core repulsion = 24010.318363 eV Total energy + Delta-G solvation = -3578.493720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56995 -39.09573 -36.88217 -35.65169 -33.87105 -32.90457 -31.41414 -29.61853 -29.08610 -27.30323 -26.67206 -26.35757 -25.61009 -24.73088 -22.52169 -21.33288 -20.33862 -19.37477 -19.19703 -18.01121 -16.74282 -16.43851 -16.06047 -15.58372 -15.24272 -15.02808 -14.76789 -14.29834 -13.84971 -13.76862 -13.67730 -13.25620 -12.95931 -12.94401 -12.79538 -12.74848 -12.48175 -12.46378 -12.39371 -12.20697 -12.03557 -11.90385 -11.71580 -11.44914 -11.29614 -11.23892 -11.11998 -10.99334 -10.43214 -10.33627 -10.19774 -10.03149 -9.76737 -9.20938 -8.83914 -8.70210 -8.67479 -8.41005 -8.28626 -6.17542 -4.11055 2.77735 3.22305 3.30533 3.36758 3.46954 3.66817 4.21041 4.35171 4.40551 4.41819 4.62328 4.77725 4.86246 4.91085 5.00678 5.06366 5.12840 5.13331 5.24450 5.32430 5.34534 5.45025 5.47985 5.52136 5.58886 5.61865 5.70958 5.78065 5.83649 5.86372 5.92948 5.98457 6.05659 6.08847 6.32136 6.36642 6.48206 6.54196 6.62287 6.70957 6.71962 6.78295 6.82655 6.99090 7.13307 7.25509 7.43581 7.73699 8.23753 8.45608 8.88892 8.92201 9.48662 10.95535 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.002842 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.935546 B = 9849.762157 C =10059.573959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 C -0.144 4.144 4 N -0.510 5.510 5 C 0.033 3.967 6 C -0.133 4.133 7 C 0.149 3.851 8 H 0.113 0.887 9 N -0.631 5.631 10 C 0.079 3.921 11 C 0.702 3.298 12 O -0.592 6.592 13 N -0.737 5.737 14 C 0.159 3.841 15 C 0.030 3.970 16 C -0.142 4.142 17 C -0.144 4.144 18 C -0.516 4.516 19 H 0.076 0.924 20 C 0.079 3.921 21 N -0.885 5.885 22 Si 0.873 3.127 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.245 1.245 26 C 0.026 3.974 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.392 0.608 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.052 0.948 48 H 0.042 0.958 49 H 0.025 0.975 50 H 0.264 0.736 51 H 0.053 0.947 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 26.421 -1.142 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.041 4.041 3 C -0.202 4.202 4 N -0.236 5.236 5 C -0.094 4.094 6 C -0.172 4.172 7 C 0.044 3.956 8 H 0.131 0.869 9 N -0.370 5.370 10 C -0.065 4.065 11 C 0.403 3.597 12 O -0.470 6.470 13 N -0.392 5.392 14 C 0.036 3.964 15 C 0.029 3.971 16 C -0.200 4.200 17 C -0.201 4.201 18 C -0.554 4.554 19 H 0.094 0.906 20 C -0.124 4.124 21 N -0.522 5.522 22 Si 0.705 3.295 23 H -0.212 1.212 24 H -0.231 1.231 25 H -0.171 1.171 26 C -0.103 4.103 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.228 0.772 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.044 0.956 50 H 0.074 0.926 51 H 0.071 0.929 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.446 26.197 0.004 26.311 hybrid contribution 1.241 -0.205 -2.127 2.471 sum -1.205 25.992 -2.123 26.106 Atomic orbital electron populations 1.21845 0.94119 1.02184 1.02136 1.21810 0.96060 0.95301 0.90950 1.21844 1.00770 0.95175 1.02386 1.64899 1.08417 1.12698 1.37570 1.23296 0.88390 0.99303 0.98444 1.22877 0.99116 0.94868 1.00359 1.21688 0.92582 0.88020 0.93351 0.86903 1.47094 1.65300 1.04783 1.19825 1.21676 0.98272 1.00851 0.85654 1.15966 0.79343 0.80314 0.84068 1.90890 1.51939 1.79644 1.24533 1.45657 1.64710 1.07529 1.21344 1.21390 1.00973 0.75528 0.98504 1.18700 0.90948 0.96094 0.91356 1.22334 1.00575 0.97871 0.99197 1.22314 0.99597 0.97404 1.00830 1.20675 1.45240 0.87095 1.02357 0.90553 1.24937 0.95536 0.94802 0.97167 1.70013 1.42463 1.02632 1.37050 0.87540 0.81360 0.78210 0.82407 1.21208 1.23103 1.17070 1.23287 0.99001 0.87421 1.00563 0.92327 0.92585 0.91703 0.94262 0.92816 0.92263 0.91637 0.93678 0.89969 0.89693 0.90375 0.92744 0.91561 0.91390 0.77226 0.92232 0.92058 0.96195 0.92431 0.93315 0.92908 0.94005 0.95600 0.92576 0.92887 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.14 37.16 0.34 -0.72 16 2 C 0.07 0.52 2.36 -67.72 -0.16 0.36 16 3 C -0.14 -0.93 8.90 37.16 0.33 -0.59 16 4 N -0.51 -4.49 5.11 -222.52 -1.14 -5.63 16 5 C 0.03 0.26 4.97 -1.89 -0.01 0.26 16 6 C -0.13 -1.23 6.33 -24.87 -0.16 -1.39 16 7 C 0.15 1.71 3.44 -66.59 -0.23 1.48 16 8 H 0.11 1.56 6.96 -51.93 -0.36 1.20 16 9 N -0.63 -8.10 2.72 -178.12 -0.49 -8.59 16 10 C 0.08 0.77 8.73 59.84 0.52 1.29 16 11 C 0.70 12.06 8.28 -86.91 -0.72 11.34 16 12 O -0.59 -12.47 15.70 5.29 0.08 -12.38 16 13 N -0.74 -12.52 4.87 -65.22 -0.32 -12.84 16 14 C 0.16 3.26 4.50 -4.04 -0.02 3.24 16 15 C 0.03 0.66 0.50 -155.66 -0.08 0.58 16 16 C -0.14 -2.92 7.51 37.15 0.28 -2.64 16 17 C -0.14 -2.91 7.67 37.16 0.29 -2.62 16 18 C -0.52 -13.86 8.60 -34.44 -0.30 -14.16 16 19 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.08 2.18 5.25 -17.82 -0.09 2.09 16 21 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 22 Si 0.87 20.69 22.93 -169.99 -3.90 16.79 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.24 -5.25 4.58 56.52 0.26 -4.99 16 26 C 0.03 0.26 4.70 -2.77 -0.01 0.25 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.45 7.21 -51.93 -0.37 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.32 7.99 -51.93 -0.42 -0.10 16 31 H 0.05 0.33 7.25 -51.93 -0.38 -0.05 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 34 H 0.05 0.35 6.36 -51.93 -0.33 0.02 16 35 H 0.08 0.59 7.78 -51.93 -0.40 0.19 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.74 7.96 -51.93 -0.41 0.33 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.55 5.42 -51.93 -0.28 0.27 16 40 H 0.07 0.66 6.36 -51.93 -0.33 0.33 16 41 H 0.39 5.82 3.97 -40.82 -0.16 5.66 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.02 0.33 7.09 -51.93 -0.37 -0.03 16 45 H 0.06 1.25 3.84 -51.93 -0.20 1.05 16 46 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 47 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 48 H 0.04 0.88 2.74 -51.93 -0.14 0.74 16 49 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 50 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.05 0.56 6.47 -51.93 -0.34 0.22 16 52 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -30.86 375.10 -8.54 -39.41 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -9.20 Total: 4.42 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.02 Total: -1.23 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -1.17 Total: -52.66 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -3.90 Total: 16.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.86 -8.54 -39.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459229758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.755 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds