Wall clock time and date at job start Tue Mar 31 2020 10:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47177 * 2 1 4 4 N 1.46895 * 109.47675 * 120.00698 * 2 1 3 5 5 C 1.48534 * 111.00186 * 179.97438 * 4 2 1 6 6 C 1.54941 * 103.22549 * 200.27944 * 5 4 2 7 7 C 1.54591 * 102.92354 * 37.40884 * 6 5 4 8 8 H 1.09005 * 110.39343 * 219.08627 * 7 6 5 9 9 N 1.46497 * 110.31035 * 96.95992 * 7 6 5 10 10 C 1.46491 * 120.00326 * 304.28515 * 9 7 6 11 11 C 1.34785 * 119.99583 * 124.28246 * 9 7 6 12 12 O 1.21586 * 120.00184 * 0.02562 * 11 9 7 13 13 N 1.34780 * 119.99371 * 180.02562 * 11 9 7 14 14 C 1.46497 * 119.99458 * 180.02562 * 13 11 9 15 15 C 1.53005 * 109.46906 * 179.97438 * 14 13 11 16 16 C 1.52991 * 109.47176 * 299.99942 * 15 14 13 17 17 C 1.53000 * 109.46935 * 59.99983 * 15 14 13 18 18 C 1.50704 * 109.47161 * 179.97438 * 15 14 13 19 19 H 1.08001 * 119.99836 * 354.79288 * 18 15 14 20 20 C 1.37876 * 119.99988 * 174.78470 * 18 15 14 21 21 N 1.31513 * 119.99768 * 199.26925 * 20 18 15 22 22 Si 1.86797 * 119.99892 * 19.27002 * 20 18 15 23 23 H 1.48500 * 109.47002 * 84.32420 * 22 20 18 24 24 H 1.48499 * 109.47078 * 204.32472 * 22 20 18 25 25 H 1.48503 * 109.47364 * 324.32789 * 22 20 18 26 26 C 1.47897 * 111.00135 * 62.59035 * 4 2 1 27 27 H 1.08995 * 109.47370 * 59.99500 * 1 2 3 28 28 H 1.09003 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46806 * 299.99483 * 1 2 3 30 30 H 1.09003 * 109.47310 * 240.00520 * 2 1 3 31 31 H 1.09000 * 109.47679 * 185.80806 * 3 2 1 32 32 H 1.09003 * 109.47393 * 305.80733 * 3 2 1 33 33 H 1.09008 * 109.46888 * 65.80573 * 3 2 1 34 34 H 1.09003 * 110.66565 * 318.70315 * 5 4 2 35 35 H 1.08996 * 110.67529 * 81.66863 * 5 4 2 36 36 H 1.09006 * 110.71781 * 279.04943 * 6 5 4 37 37 H 1.09000 * 110.72254 * 155.77157 * 6 5 4 38 38 H 1.09001 * 109.47334 * 89.99829 * 10 9 7 39 39 H 1.09005 * 109.47069 * 330.00273 * 10 9 7 40 40 H 1.09001 * 109.47566 * 210.00010 * 10 9 7 41 41 H 0.96992 * 120.00284 * 359.97438 * 13 11 9 42 42 H 1.09002 * 109.47107 * 299.99622 * 14 13 11 43 43 H 1.08995 * 109.47335 * 60.00045 * 14 13 11 44 44 H 1.09001 * 109.47328 * 67.93267 * 16 15 14 45 45 H 1.09007 * 109.47201 * 187.92530 * 16 15 14 46 46 H 1.09000 * 109.47554 * 307.93142 * 16 15 14 47 47 H 1.09013 * 109.46962 * 60.00193 * 17 15 14 48 48 H 1.09004 * 109.47074 * 179.97438 * 17 15 14 49 49 H 1.08996 * 109.47497 * 300.00128 * 17 15 14 50 50 H 0.97005 * 119.99553 * 180.02562 * 21 20 18 51 51 H 1.08993 * 109.91984 * 26.49821 * 26 4 2 52 52 H 1.09000 * 109.91634 * 265.20140 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6926 1.1993 5 6 3.5046 -0.7129 1.2332 6 6 3.8211 -1.8776 2.2048 7 6 2.7282 -2.9172 1.8659 8 1 2.3669 -3.3985 2.7748 9 7 3.2512 -3.9194 0.9342 10 6 3.8354 -3.4992 -0.3417 11 6 3.1948 -5.2283 1.2511 12 8 2.7096 -5.5772 2.3099 13 7 3.6765 -6.1503 0.3941 14 6 3.6147 -7.5730 0.7382 15 6 4.2229 -8.3991 -0.3970 16 6 3.4366 -8.1516 -1.6858 17 6 5.6820 -7.9869 -0.6026 18 6 4.1600 -9.8626 -0.0428 19 1 3.8073 -10.1677 0.9313 20 6 4.5526 -10.8119 -0.9623 21 7 4.1599 -12.0598 -0.8276 22 14 5.6422 -10.3256 -2.3995 23 1 7.0636 -10.3393 -1.9699 24 1 5.4524 -11.2896 -3.5130 25 1 5.2770 -8.9613 -2.8583 26 6 1.5973 -2.1099 1.2025 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1250 1.4443 -0.1040 32 1 1.5943 1.9855 -0.8334 33 1 1.7640 1.9254 0.9375 34 1 3.9093 -0.9181 0.2421 35 1 3.8936 0.2295 1.6185 36 1 3.7340 -1.5500 3.2408 37 1 4.8136 -2.2837 2.0097 38 1 4.9040 -3.3269 -0.2129 39 1 3.3565 -2.5783 -0.6748 40 1 3.6804 -4.2794 -1.0869 41 1 4.0632 -5.8720 -0.4508 42 1 4.1746 -7.7493 1.6566 43 1 2.5753 -7.8667 0.8842 44 1 3.5976 -7.1261 -2.0184 45 1 3.7776 -8.8416 -2.4577 46 1 2.3745 -8.3106 -1.4997 47 1 6.2422 -8.1633 0.3158 48 1 6.1154 -8.5758 -1.4110 49 1 5.7279 -6.9284 -0.8585 50 1 4.4365 -12.7278 -1.4743 51 1 1.4457 -2.4546 0.1797 52 1 0.6765 -2.2216 1.7751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459229758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:18 Heat of formation + Delta-G solvation = -25.512215 kcal Electronic energy + Delta-G solvation = -27589.759920 eV Core-core repulsion = 24010.318363 eV Total energy + Delta-G solvation = -3579.441557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66062 -40.14308 -38.47126 -36.67794 -35.20410 -34.22722 -33.18565 -30.30672 -29.89639 -28.04102 -27.98142 -27.73478 -27.17296 -26.48025 -23.24982 -22.39843 -21.05476 -20.92435 -20.44138 -19.30071 -18.07998 -17.64452 -17.29080 -16.93541 -16.78679 -16.17314 -15.59647 -15.43738 -15.12446 -14.83966 -14.76433 -14.70746 -14.39122 -14.23207 -14.01643 -13.80327 -13.71872 -13.47953 -13.37135 -13.10695 -13.00348 -12.92692 -12.66722 -12.43925 -12.39673 -12.15939 -12.11114 -11.97354 -11.91113 -11.77352 -11.74099 -11.68950 -11.21279 -11.09842 -10.56938 -10.37315 -10.16266 -9.56101 -9.33228 -8.31542 -6.29708 1.36200 1.39579 1.50705 1.61063 2.12572 2.35728 2.91093 3.03693 3.11475 3.58763 3.68035 4.01533 4.08470 4.10452 4.14858 4.18859 4.29731 4.33842 4.38870 4.41054 4.42995 4.52671 4.64736 4.73428 4.79459 4.82926 4.84160 4.84910 4.85482 4.91774 4.94355 4.97657 5.01940 5.05324 5.06587 5.10991 5.12064 5.18596 5.30626 5.40955 5.43406 5.49725 5.56522 5.72648 5.80892 5.90120 5.96517 6.14343 6.31839 6.72840 6.99146 7.33371 7.56789 8.85815 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.002842 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.935546 B = 9849.762157 C =10059.573959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 C -0.140 4.140 4 N -0.516 5.516 5 C 0.039 3.961 6 C -0.126 4.126 7 C 0.143 3.857 8 H 0.082 0.918 9 N -0.620 5.620 10 C 0.072 3.928 11 C 0.698 3.302 12 O -0.639 6.639 13 N -0.725 5.725 14 C 0.176 3.824 15 C 0.031 3.969 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.523 4.523 19 H 0.026 0.974 20 C 0.020 3.980 21 N -0.941 5.941 22 Si 0.934 3.066 23 H -0.281 1.281 24 H -0.312 1.312 25 H -0.197 1.197 26 C 0.037 3.963 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.406 0.594 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.037 0.963 47 H 0.045 0.955 48 H 0.038 0.962 49 H 0.069 0.931 50 H 0.265 0.735 51 H 0.052 0.948 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 30.449 -3.820 30.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.197 4.197 4 N -0.242 5.242 5 C -0.088 4.088 6 C -0.165 4.165 7 C 0.038 3.962 8 H 0.100 0.900 9 N -0.357 5.357 10 C -0.070 4.070 11 C 0.399 3.601 12 O -0.521 6.521 13 N -0.382 5.382 14 C 0.052 3.948 15 C 0.029 3.971 16 C -0.198 4.198 17 C -0.200 4.200 18 C -0.561 4.561 19 H 0.044 0.956 20 C -0.178 4.178 21 N -0.580 5.580 22 Si 0.762 3.238 23 H -0.208 1.208 24 H -0.241 1.241 25 H -0.120 1.120 26 C -0.092 4.092 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.245 0.755 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.088 0.912 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.886 30.319 -2.702 30.452 hybrid contribution 0.658 -1.433 -1.151 1.953 sum -0.228 28.885 -3.854 29.142 Atomic orbital electron populations 1.21836 0.94177 1.01609 1.02525 1.21889 0.96082 0.95967 0.90362 1.21809 1.01192 0.94149 1.02565 1.64914 1.09160 1.11554 1.38557 1.23306 0.87715 0.99181 0.98580 1.22819 0.98169 0.94505 1.00962 1.21760 0.94140 0.88057 0.92248 0.90020 1.47085 1.64407 1.03140 1.21115 1.21959 0.99411 1.01849 0.83817 1.16131 0.78975 0.81639 0.83352 1.90866 1.53848 1.80776 1.26588 1.45259 1.65063 1.05861 1.21997 1.20886 0.98889 0.77663 0.97406 1.18620 0.93116 0.92835 0.92489 1.22258 0.99592 1.00319 0.97655 1.22228 0.97164 1.00045 1.00521 1.20977 1.44327 0.90524 1.00320 0.95601 1.25844 0.96745 0.94457 1.00745 1.70168 1.44580 1.04313 1.38949 0.86553 0.78886 0.80095 0.78256 1.20840 1.24066 1.11998 1.23099 0.97951 0.88186 1.00010 0.91064 0.93633 0.92219 0.93998 0.92178 0.91203 0.92197 0.92545 0.88686 0.89593 0.90143 0.90812 0.89705 0.90755 0.75460 0.94328 0.94690 0.91708 0.93270 0.94354 0.93600 0.94391 0.91213 0.92642 0.92952 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.14 71.98 0.66 -1.18 16 2 C 0.07 0.82 2.36 44.92 0.11 0.93 16 3 C -0.14 -1.35 8.90 71.98 0.64 -0.71 16 4 N -0.52 -7.88 5.11 -857.92 -4.38 -12.27 16 5 C 0.04 0.50 4.97 86.65 0.43 0.93 16 6 C -0.13 -2.05 6.33 31.80 0.20 -1.85 16 7 C 0.14 3.15 3.44 45.86 0.16 3.31 16 8 H 0.08 2.34 6.96 -2.38 -0.02 2.32 16 9 N -0.62 -14.69 2.72 -835.72 -2.28 -16.97 16 10 C 0.07 1.09 8.73 127.77 1.12 2.20 16 11 C 0.70 23.44 8.28 179.05 1.48 24.92 16 12 O -0.64 -27.68 15.70 -3.99 -0.06 -27.75 16 13 N -0.72 -23.28 4.87 -478.53 -2.33 -25.60 16 14 C 0.18 7.28 4.50 86.38 0.39 7.67 16 15 C 0.03 1.31 0.50 -52.93 -0.03 1.28 16 16 C -0.14 -5.36 7.51 71.98 0.54 -4.82 16 17 C -0.14 -5.26 7.67 71.98 0.55 -4.71 16 18 C -0.52 -29.07 8.60 25.60 0.22 -28.85 16 19 H 0.03 1.64 7.99 -2.91 -0.02 1.61 16 20 C 0.02 1.14 5.25 84.65 0.44 1.58 16 21 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 22 Si 0.93 41.74 22.93 68.60 1.57 43.31 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.20 -7.29 4.58 99.48 0.46 -6.84 16 26 C 0.04 0.69 4.70 86.44 0.41 1.10 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.04 0.67 7.21 -2.39 -0.02 0.65 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.52 7.99 -2.39 -0.02 0.50 16 31 H 0.06 0.51 7.25 -2.39 -0.02 0.50 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.06 0.61 6.36 -2.39 -0.02 0.59 16 35 H 0.09 1.02 7.78 -2.39 -0.02 1.00 16 36 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.08 1.30 7.96 -2.39 -0.02 1.28 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.02 5.42 -2.38 -0.01 1.00 16 40 H 0.07 1.07 6.36 -2.39 -0.02 1.05 16 41 H 0.41 10.38 3.97 -92.71 -0.37 10.02 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 1.87 7.09 -2.39 -0.02 1.86 16 45 H 0.05 1.95 3.84 -2.38 -0.01 1.94 16 46 H 0.04 1.51 8.13 -2.39 -0.02 1.49 16 47 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.04 1.44 2.74 -2.38 -0.01 1.43 16 49 H 0.07 1.96 6.86 -2.39 -0.02 1.94 16 50 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 51 H 0.05 0.99 6.47 -2.39 -0.02 0.97 16 52 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.80 375.10 0.42 -71.38 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.28 Total: 24.20 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 7.32 Total: 1.81 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -8.69 Total: -112.95 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.06 Total: -27.75 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.57 Total: 43.31 kcal Total: -71.80 0.42 -71.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459229758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.869 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds