Wall clock time and date at job start Tue Mar 31 2020 09:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47142 * 60.00295 * 4 3 2 6 6 N 1.46501 * 109.46870 * 299.99596 * 5 4 3 7 7 C 1.34776 * 120.00317 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99789 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00227 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.46780 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46706 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47108 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47353 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99874 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00278 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00380 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99825 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47048 * 89.99947 * 17 15 13 19 19 H 1.48502 * 109.47259 * 209.99515 * 17 15 13 20 20 H 1.48501 * 109.47475 * 329.99864 * 17 15 13 21 21 C 1.53001 * 109.47329 * 299.99846 * 4 3 2 22 22 C 1.53000 * 109.46896 * 300.00108 * 21 4 3 23 23 C 1.53002 * 109.47108 * 299.99767 * 22 21 4 24 24 C 1.53001 * 109.47052 * 60.00328 * 23 22 21 25 25 C 1.53000 * 109.46896 * 299.99802 * 24 23 22 26 26 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 30 30 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 31 31 H 1.08997 * 109.47258 * 59.99704 * 5 4 3 32 32 H 1.08999 * 109.47269 * 179.97438 * 5 4 3 33 33 H 0.97002 * 120.00071 * 359.97438 * 6 5 4 34 34 H 1.08997 * 109.46972 * 299.99372 * 9 7 6 35 35 H 1.08999 * 109.47332 * 59.99407 * 9 7 6 36 36 H 1.08997 * 109.47258 * 299.99690 * 10 9 7 37 37 H 1.08999 * 109.46812 * 60.00137 * 10 9 7 38 38 H 1.09005 * 109.47059 * 300.00250 * 11 10 9 39 39 H 1.08999 * 109.47165 * 60.00048 * 11 10 9 40 40 H 1.09005 * 109.47086 * 299.99892 * 12 11 10 41 41 H 1.08999 * 109.47347 * 59.99818 * 12 11 10 42 42 H 0.97001 * 120.00059 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.47124 * 60.00243 * 21 4 3 44 44 H 1.08999 * 109.47164 * 179.97438 * 21 4 3 45 45 H 1.09000 * 109.46565 * 180.02562 * 22 21 4 46 46 H 1.08999 * 109.47347 * 59.99949 * 22 21 4 47 47 H 1.08999 * 109.47165 * 300.00293 * 23 22 21 48 48 H 1.08997 * 109.47161 * 180.02562 * 23 22 21 49 49 H 1.09001 * 109.46883 * 180.02562 * 24 23 22 50 50 H 1.08999 * 109.47164 * 59.99965 * 24 23 22 51 51 H 1.08999 * 109.47347 * 300.00051 * 25 24 23 52 52 H 1.09005 * 109.47086 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4252 -1.2483 6 7 3.3916 -0.9132 -1.2483 7 6 3.6514 -1.7666 -2.2586 8 8 4.3782 -1.4263 -3.1680 9 6 3.0380 -3.1431 -2.2588 10 6 3.4901 -3.9026 -3.5077 11 6 2.8679 -5.3004 -3.5076 12 6 3.3204 -6.0602 -4.7562 13 6 2.7081 -7.4371 -4.7558 14 1 2.0605 -7.7399 -3.9463 15 6 2.9736 -8.3100 -5.7895 16 7 2.4388 -9.5115 -5.7894 17 14 4.0931 -7.7860 -7.1900 18 1 5.4972 -8.1401 -6.8604 19 1 3.6863 -8.4836 -8.4364 20 1 3.9859 -6.3180 -7.3868 21 6 3.9864 0.4257 1.2502 22 6 3.5345 1.1852 2.4991 23 6 4.1568 2.5829 2.4990 24 6 3.7058 3.3419 1.2495 25 6 4.1578 2.5824 0.0006 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 3.6661 0.9660 -2.1385 32 1 5.0740 0.3395 -1.2481 33 1 2.8106 -1.1854 -0.5208 34 1 3.3587 -3.6839 -1.3684 35 1 1.9515 -3.0567 -2.2599 36 1 3.1692 -3.3617 -4.3979 37 1 4.5767 -3.9890 -3.5069 38 1 3.1891 -5.8410 -2.6173 39 1 1.7813 -5.2144 -3.5081 40 1 2.9994 -5.5196 -5.6467 41 1 4.4070 -6.1462 -4.7553 42 1 2.6260 -10.1257 -6.5165 43 1 3.5432 -0.5701 1.2502 44 1 5.0730 0.3392 1.2504 45 1 3.8562 0.6447 3.3893 46 1 2.4479 1.2713 2.4987 47 1 5.2434 2.4969 2.4995 48 1 3.8351 3.1239 3.3890 49 1 4.1495 4.3375 1.2492 50 1 2.6192 3.4280 1.2490 51 1 5.2443 2.4963 0.0010 52 1 3.8368 3.1234 -0.8897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589484963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:22 Heat of formation + Delta-G solvation = -125.183664 kcal Electronic energy + Delta-G solvation = -26634.170516 eV Core-core repulsion = 23018.114130 eV Total energy + Delta-G solvation = -3616.056386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71615 -39.10444 -37.46905 -35.15429 -34.63097 -32.55132 -32.03900 -31.19034 -30.01866 -27.81357 -26.70085 -25.66687 -25.06492 -23.14340 -22.06199 -21.29885 -20.06635 -19.93334 -19.07160 -17.22306 -16.70810 -16.58702 -16.10565 -15.89529 -15.70217 -15.51944 -15.04852 -14.56572 -14.38862 -14.29907 -14.13145 -13.72010 -13.49309 -13.12644 -12.77848 -12.66866 -12.58353 -12.52658 -12.09227 -11.99688 -11.92218 -11.77163 -11.66746 -11.55946 -11.42880 -11.02856 -10.67503 -10.64694 -10.53935 -10.48310 -10.45000 -9.96651 -9.83874 -9.69934 -9.57608 -9.29771 -9.06035 -8.89433 -8.44964 -5.96298 -3.93306 2.89977 3.09098 3.39004 3.45638 3.52290 3.52577 4.16334 4.22604 4.30480 4.54307 4.55352 4.73746 4.76665 4.82286 4.91065 4.98779 4.99859 5.05857 5.06703 5.16080 5.20105 5.20466 5.36595 5.37898 5.39317 5.40505 5.45862 5.50938 5.55089 5.62414 5.67277 5.70748 5.75663 5.85574 5.92974 5.97152 6.01818 6.14269 6.27314 6.50099 6.62400 6.72895 6.78050 6.92435 7.07022 7.45098 7.57776 7.77440 7.89837 8.49056 8.63312 9.09005 9.67363 11.17214 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.027440 B = 0.002220 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.164844 B =12606.954082 C =13005.811503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.069 3.931 4 C -0.066 4.066 5 C 0.133 3.867 6 N -0.723 5.723 7 C 0.508 3.492 8 O -0.548 6.548 9 C -0.137 4.137 10 C -0.105 4.105 11 C -0.102 4.102 12 C -0.016 4.016 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.063 3.937 16 N -0.907 5.907 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.264 1.264 21 C -0.106 4.106 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.106 4.106 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.409 0.591 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 29.729 19.729 35.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.007 4.007 4 C -0.067 4.067 5 C 0.009 3.991 6 N -0.381 5.381 7 C 0.296 3.704 8 O -0.426 6.426 9 C -0.177 4.177 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.555 4.555 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.144 4.144 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.159 4.159 25 C -0.144 4.144 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.251 0.749 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.092 0.908 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.198 29.642 18.987 35.202 hybrid contribution 0.015 0.280 -0.444 0.525 sum -0.183 29.922 18.543 35.202 Atomic orbital electron populations 1.22762 0.80534 1.03180 0.99895 1.87566 1.19972 1.27941 1.95355 1.22715 0.92697 0.84842 1.00483 1.20875 0.93634 0.96274 0.95871 1.21219 0.97972 0.83573 0.96371 1.46317 1.51287 1.14110 1.26417 1.21027 0.80818 0.87265 0.81323 1.90676 1.37732 1.78117 1.36053 1.21725 1.01765 0.92245 1.01970 1.21463 1.01119 0.96218 0.95507 1.21475 0.99493 0.92976 1.00049 1.19582 0.96153 0.95936 0.93658 1.21195 1.29410 0.96595 1.08349 0.91118 1.25046 0.95794 0.94785 0.98074 1.69923 1.44984 1.06697 1.33025 0.86771 0.81220 0.79403 0.81887 1.20332 1.21504 1.18885 1.21537 1.01059 0.99065 0.92716 1.21571 1.00685 0.95676 0.97864 1.21562 1.00821 0.95931 0.97555 1.21584 1.01106 0.98718 0.94481 1.21498 1.01072 0.93458 0.98409 0.94016 0.89248 0.94136 0.93239 0.92345 0.92006 0.91715 0.74919 0.89291 0.89247 0.91933 0.91913 0.92918 0.92918 0.96646 0.97067 0.92872 0.90955 0.91622 0.91871 0.91842 0.91856 0.92125 0.91704 0.91877 0.90761 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -2.99 6.75 -35.23 -0.24 -3.23 16 3 C 0.07 0.46 4.11 37.16 0.15 0.61 16 4 C -0.07 -0.45 0.51 -154.51 -0.08 -0.53 16 5 C 0.13 1.32 4.57 -4.04 -0.02 1.30 16 6 N -0.72 -8.16 4.62 -60.29 -0.28 -8.44 16 7 C 0.51 7.54 7.83 -10.98 -0.09 7.46 16 8 O -0.55 -10.34 15.98 5.55 0.09 -10.25 16 9 C -0.14 -1.93 5.70 -27.88 -0.16 -2.09 16 10 C -0.11 -1.89 4.50 -26.73 -0.12 -2.01 16 11 C -0.10 -2.10 5.15 -26.73 -0.14 -2.24 16 12 C -0.02 -0.40 4.04 -27.88 -0.11 -0.52 16 13 C -0.52 -15.35 9.66 -34.44 -0.33 -15.68 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.91 -28.79 13.96 55.43 0.77 -28.01 16 17 Si 0.88 22.78 27.47 -169.99 -4.67 18.11 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 21 C -0.11 -0.72 4.42 -26.73 -0.12 -0.84 16 22 C -0.12 -0.67 5.65 -26.73 -0.15 -0.82 16 23 C -0.12 -0.59 5.92 -26.73 -0.16 -0.75 16 24 C -0.12 -0.56 5.65 -26.73 -0.15 -0.72 16 25 C -0.11 -0.59 4.73 -26.73 -0.13 -0.72 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 4.81 -51.93 -0.25 0.08 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.41 4.04 4.70 -40.82 -0.19 3.85 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 41 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.07 0.56 6.49 -51.93 -0.34 0.22 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.06 0.28 6.43 -51.93 -0.33 -0.05 16 51 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -34.37 392.99 -8.81 -43.18 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -9.83 Total: -2.87 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.58 Total: -14.40 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.50 Total: -36.46 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.15 Total: -13.48 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.37 -8.81 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589484963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.006 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds