Wall clock time and date at job start Tue Mar 31 2020 10:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47091 * 2 1 4 4 C 1.53006 * 109.46955 * 120.00239 * 2 1 3 5 5 H 1.08994 * 109.78794 * 52.88335 * 4 2 1 6 6 C 1.53242 * 109.62558 * 292.39779 * 4 2 1 7 7 N 1.46898 * 109.33763 * 186.46113 * 6 4 2 8 8 C 1.46891 * 111.26911 * 63.10749 * 7 6 4 9 9 C 1.53694 * 109.25617 * 296.75512 * 8 7 6 10 10 N 1.47076 * 109.62811 * 173.37098 * 4 2 1 11 11 C 1.34772 * 120.88319 * 350.89576 * 10 4 2 12 12 O 1.21593 * 119.99842 * 4.53761 * 11 10 4 13 13 N 1.34776 * 120.00474 * 184.53832 * 11 10 4 14 14 C 1.46493 * 120.00486 * 175.18332 * 13 11 10 15 15 C 1.52999 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46723 * 60.00034 * 15 14 13 17 17 C 1.52999 * 109.47066 * 300.00464 * 15 14 13 18 18 C 1.52995 * 109.47473 * 180.02562 * 15 14 13 19 19 C 1.50704 * 109.47042 * 180.02562 * 18 15 14 20 20 H 1.07996 * 120.00200 * 359.97438 * 19 18 15 21 21 C 1.37876 * 119.99774 * 180.02562 * 19 18 15 22 22 N 1.31520 * 120.00235 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47123 * 270.00405 * 23 21 19 25 25 H 1.48504 * 109.46883 * 29.99816 * 23 21 19 26 26 H 1.48498 * 109.47022 * 149.99882 * 23 21 19 27 27 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46866 * 300.00010 * 1 2 3 29 29 H 1.08994 * 109.47078 * 59.99965 * 1 2 3 30 30 H 1.08998 * 109.47295 * 239.99695 * 2 1 3 31 31 H 1.09005 * 109.46796 * 169.77224 * 3 2 1 32 32 H 1.09003 * 109.47143 * 289.76458 * 3 2 1 33 33 H 1.08994 * 109.47412 * 49.77422 * 3 2 1 34 34 H 1.09002 * 109.49324 * 306.42547 * 6 4 2 35 35 H 1.09001 * 109.49189 * 66.47674 * 6 4 2 36 36 H 1.00900 * 111.00108 * 298.95468 * 7 6 4 37 37 H 1.08999 * 109.49397 * 56.85264 * 8 7 6 38 38 H 1.09001 * 109.49448 * 176.90896 * 8 7 6 39 39 H 1.09000 * 109.80044 * 294.41682 * 9 8 7 40 40 H 1.09005 * 109.70249 * 173.69264 * 9 8 7 41 41 H 0.96998 * 119.99826 * 355.18409 * 13 11 10 42 42 H 1.08999 * 109.47036 * 60.00182 * 14 13 11 43 43 H 1.08996 * 109.47472 * 300.00494 * 14 13 11 44 44 H 1.09000 * 109.47229 * 180.02562 * 16 15 14 45 45 H 1.08995 * 109.47380 * 300.00184 * 16 15 14 46 46 H 1.09004 * 109.47005 * 60.00527 * 16 15 14 47 47 H 1.08999 * 109.47046 * 299.99398 * 17 15 14 48 48 H 1.09004 * 109.47072 * 59.99620 * 17 15 14 49 49 H 1.09000 * 109.46962 * 179.97438 * 17 15 14 50 50 H 1.08999 * 109.47181 * 60.00269 * 18 15 14 51 51 H 1.09004 * 109.47379 * 300.00162 * 18 15 14 52 52 H 0.96995 * 119.99790 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5795 -1.7067 1.3202 6 6 1.6930 0.1000 2.4956 7 7 2.3174 -0.5163 3.6737 8 6 3.7826 -0.5006 3.5699 9 6 4.2145 -1.3523 2.3656 10 7 3.5020 -0.8634 1.1755 11 6 4.1705 -0.5589 0.0456 12 8 3.5765 -0.0830 -0.9027 13 7 5.4974 -0.7818 -0.0334 14 6 6.2053 -0.5504 -1.2949 15 6 7.6892 -0.8762 -1.1143 16 6 7.8431 -2.3424 -0.7046 17 6 8.2798 0.0221 -0.0257 18 6 8.4286 -0.6339 -2.4316 19 6 9.8902 -0.9555 -2.2538 20 1 10.2552 -1.2981 -1.2968 21 6 10.7615 -0.8114 -3.3126 22 7 10.3173 -0.3928 -4.4776 23 14 12.5732 -1.2094 -3.0921 24 1 13.2979 0.0099 -2.6520 25 1 12.7252 -2.2726 -2.0665 26 1 13.1368 -1.6817 -4.3822 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 3.1147 1.4478 0.1825 32 1 1.8335 1.9009 -0.9671 33 1 1.5355 2.0062 0.7846 34 1 2.0662 1.1172 2.3763 35 1 0.6112 0.1226 2.6267 36 1 1.9750 -1.4549 3.8151 37 1 4.1267 0.5249 3.4357 38 1 4.2163 -0.9136 4.4806 39 1 3.9591 -2.3972 2.5418 40 1 5.2897 -1.2559 2.2141 41 1 5.9836 -1.0955 0.7451 42 1 6.0960 0.4942 -1.5865 43 1 5.7842 -1.1900 -2.0705 44 1 8.9003 -2.5745 -0.5755 45 1 7.3165 -2.5146 0.2339 46 1 7.4224 -2.9824 -1.4802 47 1 8.1702 1.0666 -0.3175 48 1 7.7531 -0.1502 0.9129 49 1 9.3369 -0.2104 0.1032 50 1 8.3190 0.4107 -2.7230 51 1 8.0080 -1.2736 -3.2075 52 1 10.9302 -0.2918 -5.2225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599924555.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:59 Heat of formation + Delta-G solvation = -12.694406 kcal Electronic energy + Delta-G solvation = -28064.094610 eV Core-core repulsion = 24485.208875 eV Total energy + Delta-G solvation = -3578.885735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06671 -38.37684 -37.08857 -35.64913 -33.80064 -33.11705 -31.89412 -30.11170 -27.23648 -27.08672 -26.64566 -26.53599 -25.48703 -24.25094 -22.91146 -22.08884 -20.41698 -19.74804 -18.33531 -17.47212 -16.40882 -16.15393 -16.00954 -15.63090 -15.38550 -14.83489 -14.53888 -14.41419 -14.17163 -14.08321 -13.54914 -13.31009 -13.13119 -13.05282 -12.81628 -12.65535 -12.33226 -12.11809 -12.08182 -12.05610 -11.54791 -11.30823 -11.21694 -11.03834 -10.86980 -10.84785 -10.75602 -10.72200 -10.63777 -10.40282 -10.26299 -9.88591 -9.49551 -9.25798 -9.02276 -8.93636 -8.55950 -8.36982 -8.14520 -6.01036 -4.02440 2.62562 3.29795 3.32366 3.36934 3.38467 3.86853 4.00693 4.44127 4.54498 4.71550 4.76528 4.80617 4.88074 5.02738 5.14376 5.25368 5.32785 5.34455 5.46745 5.48602 5.59577 5.60635 5.62818 5.73025 5.75718 5.82840 5.96027 6.04422 6.14152 6.14810 6.21302 6.25986 6.32942 6.39591 6.50342 6.59382 6.60678 6.62119 6.73410 6.88690 6.93468 7.01943 7.05249 7.05436 7.13595 7.63027 7.75370 7.97485 8.09650 8.39336 8.78244 9.02358 9.60737 11.10409 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.003029 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.876693 B = 9240.944241 C = 9961.259269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 C -0.120 4.120 4 C 0.134 3.866 5 H 0.064 0.936 6 C 0.042 3.958 7 N -0.684 5.684 8 C 0.044 3.956 9 C 0.073 3.927 10 N -0.632 5.632 11 C 0.701 3.299 12 O -0.573 6.573 13 N -0.738 5.738 14 C 0.147 3.853 15 C -0.072 4.072 16 C -0.125 4.125 17 C -0.125 4.125 18 C 0.037 3.963 19 C -0.511 4.511 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.275 1.275 26 H -0.287 1.287 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.340 0.660 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.391 0.609 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.026 0.974 49 H 0.066 0.934 50 H 0.018 0.982 51 H 0.018 0.982 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.909 -1.719 16.181 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 C -0.177 4.177 4 C 0.029 3.971 5 H 0.082 0.918 6 C -0.089 4.089 7 N -0.312 5.312 8 C -0.087 4.087 9 C -0.053 4.053 10 N -0.371 5.371 11 C 0.403 3.597 12 O -0.452 6.452 13 N -0.396 5.396 14 C 0.024 3.976 15 C -0.073 4.073 16 C -0.182 4.182 17 C -0.182 4.182 18 C 0.000 4.000 19 C -0.550 4.550 20 H 0.077 0.923 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.200 1.200 26 H -0.213 1.213 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.157 0.843 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.228 0.772 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.045 0.955 49 H 0.085 0.915 50 H 0.037 0.963 51 H 0.036 0.964 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.287 -0.751 15.668 23.343 hybrid contribution 1.511 -1.129 -0.271 1.905 sum -15.776 -1.880 15.397 22.124 Atomic orbital electron populations 1.21998 0.96385 1.01058 1.01568 1.21741 0.93334 0.97922 0.98482 1.21848 1.01354 0.94524 1.00000 1.21886 0.78742 0.98775 0.97688 0.91794 1.22654 0.99858 0.99247 0.87095 1.60638 1.05563 1.25566 1.39441 1.22488 0.88596 1.00899 0.96680 1.22475 0.97669 0.98328 0.86795 1.47282 1.06967 1.70897 1.11906 1.15927 0.81930 0.79099 0.82742 1.90907 1.66014 1.49883 1.38381 1.45673 1.06559 1.71799 1.15530 1.21467 0.91767 1.00924 0.83483 1.20913 0.91614 0.94987 0.99782 1.21743 1.02127 0.95954 0.98401 1.21742 1.01413 0.99280 0.95785 1.19078 0.94398 0.97246 0.89323 1.21178 0.92810 1.44314 0.96663 0.92290 1.25013 0.98592 0.95497 0.95380 1.69966 1.34952 1.46851 1.01585 0.86653 0.85700 0.78555 0.77428 1.20768 1.19959 1.21331 0.93259 0.93196 0.92503 0.86554 0.91923 0.93313 0.95116 0.89744 0.89641 0.84298 0.90258 0.89478 0.91489 0.89872 0.77225 0.91997 0.92165 0.91470 0.95534 0.93394 0.93347 0.95534 0.91479 0.96328 0.96357 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.98 37.16 0.33 -1.08 16 2 C -0.10 -1.13 2.16 -90.62 -0.20 -1.33 16 3 C -0.12 -1.55 6.99 37.16 0.26 -1.29 16 4 C 0.13 1.37 2.77 -67.49 -0.19 1.18 16 5 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 6 C 0.04 0.36 5.30 -3.70 -0.02 0.34 16 7 N -0.68 -5.34 6.85 -113.25 -0.78 -6.12 16 8 C 0.04 0.33 6.72 -3.47 -0.02 0.31 16 9 C 0.07 0.62 6.55 -3.37 -0.02 0.59 16 10 N -0.63 -7.16 2.91 -170.33 -0.50 -7.66 16 11 C 0.70 10.37 7.16 -86.92 -0.62 9.75 16 12 O -0.57 -10.01 10.07 5.28 0.05 -9.96 16 13 N -0.74 -10.72 4.87 -65.23 -0.32 -11.04 16 14 C 0.15 2.59 4.57 -4.05 -0.02 2.57 16 15 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 16 C -0.12 -2.17 8.05 37.16 0.30 -1.87 16 17 C -0.12 -2.17 8.05 37.16 0.30 -1.87 16 18 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 19 C -0.51 -13.48 7.65 -34.44 -0.26 -13.74 16 20 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 21 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 23 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.40 6.82 -51.93 -0.35 0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.12 1.76 5.71 -53.00 -0.30 1.46 16 31 H 0.06 0.95 5.48 -51.93 -0.28 0.67 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.34 6.81 -51.93 -0.35 -0.01 16 34 H 0.08 0.87 6.20 -51.93 -0.32 0.55 16 35 H 0.09 0.65 6.98 -51.93 -0.36 0.29 16 36 H 0.34 2.20 8.83 -39.29 -0.35 1.85 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.69 5.72 -51.93 -0.30 0.39 16 41 H 0.39 4.93 3.69 -40.82 -0.15 4.78 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 45 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 49 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -29.69 376.85 -9.70 -39.38 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -9.10 Total: 4.86 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.45 Total: -5.62 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.85 Total: -50.41 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.05 Total: -9.96 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.69 -9.70 -39.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599924555.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.690 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds