Wall clock time and date at job start Tue Mar 31 2020 10:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47091 * 2 1 4 4 C 1.53006 * 109.46955 * 120.00239 * 2 1 3 5 5 H 1.08994 * 109.78794 * 52.88335 * 4 2 1 6 6 C 1.53242 * 109.62558 * 292.39779 * 4 2 1 7 7 N 1.46898 * 109.33763 * 186.46113 * 6 4 2 8 8 C 1.46891 * 111.26911 * 63.10749 * 7 6 4 9 9 C 1.53694 * 109.25617 * 296.75512 * 8 7 6 10 10 N 1.47076 * 109.62811 * 173.37098 * 4 2 1 11 11 C 1.34772 * 120.88319 * 350.89576 * 10 4 2 12 12 O 1.21593 * 119.99842 * 4.53761 * 11 10 4 13 13 N 1.34776 * 120.00474 * 184.53832 * 11 10 4 14 14 C 1.46493 * 120.00486 * 175.18332 * 13 11 10 15 15 C 1.52999 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46723 * 60.00034 * 15 14 13 17 17 C 1.52999 * 109.47066 * 300.00464 * 15 14 13 18 18 C 1.52995 * 109.47473 * 180.02562 * 15 14 13 19 19 C 1.50704 * 109.47042 * 180.02562 * 18 15 14 20 20 H 1.07996 * 120.00200 * 359.97438 * 19 18 15 21 21 C 1.37876 * 119.99774 * 180.02562 * 19 18 15 22 22 N 1.31520 * 120.00235 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47123 * 270.00405 * 23 21 19 25 25 H 1.48504 * 109.46883 * 29.99816 * 23 21 19 26 26 H 1.48498 * 109.47022 * 149.99882 * 23 21 19 27 27 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46866 * 300.00010 * 1 2 3 29 29 H 1.08994 * 109.47078 * 59.99965 * 1 2 3 30 30 H 1.08998 * 109.47295 * 239.99695 * 2 1 3 31 31 H 1.09005 * 109.46796 * 169.77224 * 3 2 1 32 32 H 1.09003 * 109.47143 * 289.76458 * 3 2 1 33 33 H 1.08994 * 109.47412 * 49.77422 * 3 2 1 34 34 H 1.09002 * 109.49324 * 306.42547 * 6 4 2 35 35 H 1.09001 * 109.49189 * 66.47674 * 6 4 2 36 36 H 1.00900 * 111.00108 * 298.95468 * 7 6 4 37 37 H 1.08999 * 109.49397 * 56.85264 * 8 7 6 38 38 H 1.09001 * 109.49448 * 176.90896 * 8 7 6 39 39 H 1.09000 * 109.80044 * 294.41682 * 9 8 7 40 40 H 1.09005 * 109.70249 * 173.69264 * 9 8 7 41 41 H 0.96998 * 119.99826 * 355.18409 * 13 11 10 42 42 H 1.08999 * 109.47036 * 60.00182 * 14 13 11 43 43 H 1.08996 * 109.47472 * 300.00494 * 14 13 11 44 44 H 1.09000 * 109.47229 * 180.02562 * 16 15 14 45 45 H 1.08995 * 109.47380 * 300.00184 * 16 15 14 46 46 H 1.09004 * 109.47005 * 60.00527 * 16 15 14 47 47 H 1.08999 * 109.47046 * 299.99398 * 17 15 14 48 48 H 1.09004 * 109.47072 * 59.99620 * 17 15 14 49 49 H 1.09000 * 109.46962 * 179.97438 * 17 15 14 50 50 H 1.08999 * 109.47181 * 60.00269 * 18 15 14 51 51 H 1.09004 * 109.47379 * 300.00162 * 18 15 14 52 52 H 0.96995 * 119.99790 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5795 -1.7067 1.3202 6 6 1.6930 0.1000 2.4956 7 7 2.3174 -0.5163 3.6737 8 6 3.7826 -0.5006 3.5699 9 6 4.2145 -1.3523 2.3656 10 7 3.5020 -0.8634 1.1755 11 6 4.1705 -0.5589 0.0456 12 8 3.5765 -0.0830 -0.9027 13 7 5.4974 -0.7818 -0.0334 14 6 6.2053 -0.5504 -1.2949 15 6 7.6892 -0.8762 -1.1143 16 6 7.8431 -2.3424 -0.7046 17 6 8.2798 0.0221 -0.0257 18 6 8.4286 -0.6339 -2.4316 19 6 9.8902 -0.9555 -2.2538 20 1 10.2552 -1.2981 -1.2968 21 6 10.7615 -0.8114 -3.3126 22 7 10.3173 -0.3928 -4.4776 23 14 12.5732 -1.2094 -3.0921 24 1 13.2979 0.0099 -2.6520 25 1 12.7252 -2.2726 -2.0665 26 1 13.1368 -1.6817 -4.3822 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 3.1147 1.4478 0.1825 32 1 1.8335 1.9009 -0.9671 33 1 1.5355 2.0062 0.7846 34 1 2.0662 1.1172 2.3763 35 1 0.6112 0.1226 2.6267 36 1 1.9750 -1.4549 3.8151 37 1 4.1267 0.5249 3.4357 38 1 4.2163 -0.9136 4.4806 39 1 3.9591 -2.3972 2.5418 40 1 5.2897 -1.2559 2.2141 41 1 5.9836 -1.0955 0.7451 42 1 6.0960 0.4942 -1.5865 43 1 5.7842 -1.1900 -2.0705 44 1 8.9003 -2.5745 -0.5755 45 1 7.3165 -2.5146 0.2339 46 1 7.4224 -2.9824 -1.4802 47 1 8.1702 1.0666 -0.3175 48 1 7.7531 -0.1502 0.9129 49 1 9.3369 -0.2104 0.1032 50 1 8.3190 0.4107 -2.7230 51 1 8.0080 -1.2736 -3.2075 52 1 10.9302 -0.2918 -5.2225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599924555.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:59 Heat of formation + Delta-G solvation = -32.422255 kcal Electronic energy + Delta-G solvation = -28064.950073 eV Core-core repulsion = 24485.208875 eV Total energy + Delta-G solvation = -3579.741199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.07132 -39.56490 -38.34523 -36.65977 -34.99205 -34.56065 -33.46807 -30.84521 -29.13051 -28.03008 -27.98232 -27.90774 -26.55501 -25.17351 -24.59006 -22.96405 -21.40722 -20.87468 -19.68866 -18.62303 -18.36038 -17.25014 -17.04315 -16.56492 -16.42881 -16.22601 -15.68522 -15.62107 -15.42419 -15.03063 -14.78242 -14.56536 -14.43277 -14.13313 -13.95637 -13.86747 -13.77643 -13.54035 -12.99093 -12.95622 -12.86069 -12.72287 -12.61255 -12.35602 -12.23521 -12.20268 -12.03617 -11.97479 -11.83624 -11.67368 -11.63142 -11.51922 -11.03058 -10.86788 -10.51632 -10.38622 -10.13703 -9.78005 -8.93262 -8.14155 -6.22170 1.42414 1.42849 1.53134 1.61787 2.18015 2.43939 2.92957 3.20341 3.29474 3.82060 3.90260 3.98788 4.03899 4.06512 4.09112 4.18227 4.21217 4.33650 4.38991 4.39774 4.65832 4.67934 4.72196 4.76465 4.78677 4.80661 4.84380 4.94443 5.01199 5.04618 5.08226 5.09513 5.10431 5.16187 5.31477 5.36033 5.41274 5.48597 5.49669 5.51983 5.55138 5.65019 5.79477 5.82423 5.89412 5.92389 5.97551 6.30368 6.48174 6.92610 7.01416 7.45696 7.64895 8.98452 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.003029 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.876693 B = 9240.944241 C = 9961.259269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.111 4.111 4 C 0.134 3.866 5 H 0.078 0.922 6 C 0.052 3.948 7 N -0.684 5.684 8 C 0.049 3.951 9 C 0.068 3.932 10 N -0.626 5.626 11 C 0.694 3.306 12 O -0.606 6.606 13 N -0.729 5.729 14 C 0.165 3.835 15 C -0.064 4.064 16 C -0.118 4.118 17 C -0.118 4.118 18 C 0.042 3.958 19 C -0.513 4.513 20 H 0.073 0.927 21 C -0.005 4.005 22 N -0.939 5.939 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.258 1.258 26 H -0.290 1.290 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.351 0.649 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.403 0.597 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.036 0.964 47 H 0.034 0.966 48 H 0.066 0.934 49 H 0.057 0.943 50 H -0.016 1.016 51 H -0.015 1.015 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.346 -3.090 19.963 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.168 4.168 4 C 0.029 3.971 5 H 0.096 0.904 6 C -0.079 4.079 7 N -0.312 5.312 8 C -0.081 4.081 9 C -0.056 4.056 10 N -0.364 5.364 11 C 0.396 3.604 12 O -0.487 6.487 13 N -0.388 5.388 14 C 0.040 3.960 15 C -0.065 4.065 16 C -0.175 4.175 17 C -0.176 4.176 18 C 0.004 3.996 19 C -0.551 4.551 20 H 0.091 0.909 21 C -0.202 4.202 22 N -0.580 5.580 23 Si 0.784 3.216 24 H -0.202 1.202 25 H -0.182 1.182 26 H -0.216 1.216 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.170 0.830 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.242 0.758 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.003 0.997 51 H 0.004 0.996 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.738 -2.150 19.526 26.467 hybrid contribution 1.561 -0.680 -1.447 2.234 sum -16.177 -2.830 18.079 24.425 Atomic orbital electron populations 1.21921 0.94205 1.02009 1.02154 1.21555 0.95121 0.96701 0.97909 1.21731 0.99843 0.95773 0.99471 1.22019 0.77980 0.99552 0.97549 0.90390 1.22542 1.00838 0.97993 0.86508 1.60622 1.05688 1.26433 1.38489 1.22487 0.88507 1.00004 0.97150 1.22744 0.97679 0.99496 0.85668 1.47345 1.07554 1.69906 1.11625 1.16127 0.81800 0.79059 0.83427 1.90926 1.66614 1.51165 1.40017 1.45344 1.06683 1.72160 1.14626 1.20978 0.91326 0.99079 0.84627 1.20708 0.91540 0.96880 0.97336 1.21657 1.01894 0.94010 0.99960 1.21660 1.01130 0.97995 0.96774 1.18949 0.94753 0.94287 0.91612 1.21590 0.93534 1.43004 0.97000 0.90859 1.25957 1.03549 0.95602 0.95114 1.70127 1.36614 1.48660 1.02622 0.85540 0.79832 0.78761 0.77482 1.20177 1.18226 1.21610 0.92114 0.91314 0.93215 0.90303 0.94529 0.95247 0.93190 0.91435 0.87948 0.82956 0.91789 0.87027 0.89513 0.89473 0.75774 0.94221 0.94097 0.92503 0.91515 0.94521 0.94633 0.91563 0.92437 0.99729 0.99646 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.98 71.98 0.65 -1.83 16 2 C -0.09 -2.18 2.16 -10.79 -0.02 -2.20 16 3 C -0.11 -2.92 6.99 71.98 0.50 -2.42 16 4 C 0.13 2.47 2.77 44.96 0.12 2.60 16 5 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 6 C 0.05 0.76 5.30 86.38 0.46 1.22 16 7 N -0.68 -8.24 6.85 -512.21 -3.51 -11.75 16 8 C 0.05 0.57 6.72 86.54 0.58 1.15 16 9 C 0.07 0.93 6.55 86.50 0.57 1.50 16 10 N -0.63 -13.16 2.91 -811.07 -2.36 -15.52 16 11 C 0.69 20.43 7.16 179.06 1.28 21.72 16 12 O -0.61 -22.13 10.07 -4.01 -0.04 -22.17 16 13 N -0.73 -20.66 4.87 -478.56 -2.33 -22.99 16 14 C 0.16 6.00 4.57 86.38 0.39 6.40 16 15 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 16 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 17 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 18 C 0.04 2.13 4.04 29.85 0.12 2.25 16 19 C -0.51 -27.46 7.65 25.60 0.20 -27.27 16 20 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 21 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 22 N -0.94 -57.33 13.29 21.45 0.28 -57.05 16 23 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.92 6.82 -2.39 -0.02 0.91 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 2.48 5.71 -19.34 -0.11 2.37 16 31 H 0.04 1.14 5.48 -2.38 -0.01 1.13 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.08 6.81 -2.39 -0.02 1.07 16 34 H 0.07 1.25 6.20 -2.39 -0.01 1.24 16 35 H 0.10 1.19 6.98 -2.39 -0.02 1.17 16 36 H 0.35 3.05 8.83 -89.69 -0.79 2.26 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 1.12 5.72 -2.38 -0.01 1.11 16 41 H 0.40 9.13 3.69 -92.71 -0.34 8.78 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 44 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 45 H 0.07 1.68 6.86 -2.39 -0.02 1.66 16 46 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16 49 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 50 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 51 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 52 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -68.61 376.85 0.20 -68.42 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.32 Total: 21.52 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 6.44 Total: -5.96 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -7.91 Total: -107.31 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.04 Total: -22.17 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.61 0.20 -68.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599924555.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.994 kcal (2) G-P(sol) polarization free energy of solvation -68.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds