Wall clock time and date at job start Tue Mar 31 2020 10:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47203 * 2 1 4 4 H 1.08995 * 109.46828 * 60.55069 * 3 2 1 5 5 C 1.50704 * 109.46875 * 180.55294 * 3 2 1 6 6 O 1.21279 * 120.00204 * 102.93652 * 5 3 2 7 7 N 1.34781 * 119.99566 * 282.93106 * 5 3 2 8 8 C 1.47073 * 120.88347 * 355.76388 * 7 5 3 9 9 C 1.53237 * 108.52413 * 129.08502 * 8 7 5 10 10 N 1.46905 * 109.33969 * 53.82569 * 9 8 7 11 11 C 1.46900 * 110.99895 * 172.74401 * 10 9 8 12 12 C 1.50702 * 109.47102 * 59.39114 * 11 10 9 13 13 H 1.08007 * 119.99763 * 5.04748 * 12 11 10 14 14 C 1.37868 * 120.00330 * 185.05479 * 12 11 10 15 15 N 1.31524 * 119.99908 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00285 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47504 * 59.99548 * 16 14 12 18 18 H 1.48507 * 109.47397 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47153 * 299.99441 * 16 14 12 20 20 C 1.46896 * 111.27045 * 296.89986 * 10 9 8 21 21 C 1.47082 * 120.87662 * 176.03981 * 7 5 3 22 22 N 1.46900 * 109.47152 * 300.54935 * 3 2 1 23 23 C 1.46897 * 110.99879 * 180.46166 * 22 3 2 24 24 C 1.53004 * 109.46858 * 290.91286 * 23 22 3 25 25 C 1.46901 * 111.00066 * 304.41305 * 22 3 2 26 26 C 1.52998 * 109.47099 * 163.59056 * 25 22 3 27 27 H 1.08995 * 109.47501 * 185.11089 * 1 2 3 28 28 H 1.08995 * 109.46830 * 305.11324 * 1 2 3 29 29 H 1.08997 * 109.46680 * 65.11140 * 1 2 3 30 30 H 1.09003 * 109.47180 * 240.00031 * 2 1 3 31 31 H 1.08996 * 109.47132 * 120.00180 * 2 1 3 32 32 H 1.09003 * 109.63005 * 248.79273 * 8 7 5 33 33 H 1.09004 * 109.63368 * 9.37507 * 8 7 5 34 34 H 1.08997 * 109.49606 * 293.86865 * 9 8 7 35 35 H 1.08997 * 109.49642 * 173.78841 * 9 8 7 36 36 H 1.09001 * 109.47074 * 179.38447 * 11 10 9 37 37 H 1.08993 * 109.47568 * 299.38672 * 11 10 9 38 38 H 0.97001 * 119.99634 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.49300 * 303.14115 * 20 10 9 40 40 H 1.09000 * 109.49055 * 183.06279 * 20 10 9 41 41 H 1.08999 * 109.62877 * 350.62124 * 21 7 5 42 42 H 1.08995 * 109.62864 * 111.20567 * 21 7 5 43 43 H 1.09001 * 109.47518 * 50.91318 * 23 22 3 44 44 H 1.09003 * 109.47422 * 170.91811 * 23 22 3 45 45 H 1.09005 * 109.47126 * 66.15929 * 24 23 22 46 46 H 1.09005 * 109.47200 * 186.15864 * 24 23 22 47 47 H 1.09004 * 109.47455 * 306.15849 * 24 23 22 48 48 H 1.09003 * 109.47374 * 283.59285 * 25 22 3 49 49 H 1.09001 * 109.47058 * 43.59256 * 25 22 3 50 50 H 1.09000 * 109.46938 * 306.41267 * 26 25 22 51 51 H 1.08997 * 109.47147 * 66.40656 * 26 25 22 52 52 H 1.08997 * 109.47513 * 186.41158 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6848 1.9534 0.8949 5 6 3.5470 1.4425 -0.0137 6 8 4.1441 1.6809 -1.0421 7 7 4.2311 1.1776 1.1169 8 6 3.5300 0.9772 2.3942 9 6 4.0267 -0.3291 3.0226 10 7 5.4924 -0.2970 3.1169 11 6 5.9969 -1.4538 3.8688 12 6 5.5725 -2.7249 3.1794 13 1 5.0574 -2.6789 2.2312 14 6 5.8417 -3.9465 3.7590 15 7 6.4693 -4.0026 4.9135 16 14 5.3150 -5.5220 2.9049 17 1 5.9673 -5.6053 1.5735 18 1 5.7195 -6.6903 3.7276 19 1 3.8398 -5.5233 2.7342 20 6 6.1105 -0.2236 1.7864 21 6 5.6991 1.0871 1.1073 22 7 1.5396 2.1389 -1.1927 23 6 2.0193 3.5267 -1.2321 24 6 1.3493 4.3297 -0.1152 25 6 1.9114 1.4184 -2.4178 26 6 1.0548 1.9177 -3.5830 27 1 -0.3634 -1.0235 0.0915 28 1 -0.3633 0.5911 0.8406 29 1 -0.3632 0.4325 -0.9322 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7439 1.8102 3.0639 33 1 2.4564 0.9130 2.2165 34 1 3.7206 -1.1709 2.4016 35 1 3.6004 -0.4382 4.0198 36 1 7.0851 -1.4111 3.9141 37 1 5.5902 -1.4356 4.8798 38 1 6.6590 -4.8621 5.3211 39 1 5.7754 -1.0668 1.1826 40 1 7.1954 -0.2562 1.8870 41 1 6.0597 1.0955 0.0787 42 1 6.1215 1.9306 1.6533 43 1 3.1002 3.5418 -1.0922 44 1 1.7715 3.9697 -2.1968 45 1 1.6837 3.9552 0.8524 46 1 1.6199 5.3813 -0.2111 47 1 0.2670 4.2247 -0.1911 48 1 2.9640 1.5960 -2.6384 49 1 1.7451 0.3506 -2.2760 50 1 0.0005 1.8452 -3.3159 51 1 1.3043 2.9566 -3.7984 52 1 1.2491 1.3070 -4.4646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:42 Heat of formation + Delta-G solvation = -21.566734 kcal Electronic energy + Delta-G solvation = -28482.561170 eV Core-core repulsion = 24903.290702 eV Total energy + Delta-G solvation = -3579.270468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74524 -38.34455 -36.79224 -34.68691 -33.57976 -32.35615 -31.91741 -30.76613 -29.26593 -28.25512 -26.36357 -25.19341 -23.34208 -23.03146 -22.41742 -22.21618 -20.97743 -19.88769 -18.37715 -17.25470 -16.42240 -16.29631 -15.87160 -15.41094 -14.94769 -14.88366 -14.50354 -14.47175 -14.19392 -13.79546 -13.69044 -13.46144 -13.30616 -12.91959 -12.64581 -12.31937 -12.27134 -12.09029 -12.01790 -11.85491 -11.66817 -11.49517 -11.37556 -11.17042 -11.09624 -11.01746 -10.92369 -10.72875 -10.66849 -10.63791 -10.42349 -10.32823 -10.02201 -9.92436 -9.71284 -8.50764 -8.44890 -8.11758 -7.31651 -6.10696 -4.20454 2.67564 3.16959 3.23133 3.28805 3.31016 3.79205 4.33971 4.53529 4.73056 4.82731 4.87114 4.97859 5.18080 5.19546 5.24543 5.28222 5.34279 5.39051 5.42165 5.45968 5.49573 5.56230 5.60027 5.67858 5.72097 5.77495 5.84268 5.84522 5.91884 5.93985 5.98957 6.02442 6.08745 6.10591 6.11931 6.26009 6.35613 6.38116 6.55705 6.65018 6.71174 6.94132 7.02751 7.14916 7.42521 7.57258 7.80863 7.91174 8.13316 8.18954 8.28123 8.88947 9.47113 10.94458 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.003822 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.584152 B = 7325.199303 C = 7943.669952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.066 3.934 4 H 0.105 0.895 5 C 0.489 3.511 6 O -0.551 6.551 7 N -0.601 5.601 8 C 0.105 3.895 9 C 0.051 3.949 10 N -0.540 5.540 11 C 0.188 3.812 12 C -0.553 4.553 13 H 0.055 0.945 14 C 0.067 3.933 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.277 1.277 20 C 0.051 3.949 21 C 0.114 3.886 22 N -0.505 5.505 23 C 0.036 3.964 24 C -0.147 4.147 25 C 0.028 3.972 26 C -0.143 4.143 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.058 0.942 51 H 0.049 0.951 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 13.168 -9.649 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C -0.046 4.046 4 H 0.123 0.877 5 C 0.276 3.724 6 O -0.430 6.430 7 N -0.334 5.334 8 C -0.018 4.018 9 C -0.078 4.078 10 N -0.264 5.264 11 C 0.063 3.937 12 C -0.592 4.592 13 H 0.073 0.927 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.079 4.079 21 C -0.009 4.009 22 N -0.228 5.228 23 C -0.091 4.091 24 C -0.205 4.205 25 C -0.099 4.099 26 C -0.201 4.201 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.077 0.923 51 H 0.068 0.932 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.394 13.608 -9.762 20.256 hybrid contribution 0.537 -1.852 -0.696 2.050 sum -10.856 11.756 -10.458 19.116 Atomic orbital electron populations 1.21608 0.94062 1.01121 1.02689 1.21662 0.97594 0.93186 1.03255 1.21985 0.88934 0.97444 0.96270 0.87749 1.21946 0.91215 0.76165 0.83108 1.90588 1.71037 1.50093 1.31286 1.48357 1.07693 1.68890 1.08498 1.22090 0.96044 0.99427 0.84270 1.22213 0.90647 0.94377 1.00587 1.62484 1.04242 1.44779 1.14929 1.19760 0.95776 0.84597 0.93581 1.21676 1.38725 0.92123 1.06642 0.92713 1.24943 0.94808 0.99088 0.94747 1.69929 1.40514 1.25682 1.16642 0.86720 0.79101 0.82949 0.79651 1.20277 1.21099 1.20216 1.22237 0.99639 0.94908 0.91086 1.21812 0.79100 0.98623 1.01332 1.62575 1.56868 1.01949 1.01433 1.22255 0.98801 0.88438 0.99633 1.21791 1.01425 0.99067 0.98215 1.22430 0.99987 0.98346 0.89162 1.21768 1.00441 1.00689 0.97221 0.92995 0.92705 0.91650 0.91166 0.90576 0.91031 0.90096 0.93744 0.90246 0.95328 0.94542 0.92656 0.94121 0.90464 0.89766 0.91506 0.93050 0.90811 0.93173 0.92528 0.91879 0.91199 0.90833 0.92317 0.93216 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.12 -1.39 4.72 -26.73 -0.13 -1.52 16 3 C 0.07 0.79 1.22 -68.86 -0.08 0.71 16 4 H 0.10 1.15 5.44 -51.93 -0.28 0.87 16 5 C 0.49 7.30 6.00 -10.98 -0.07 7.23 16 6 O -0.55 -9.58 11.64 5.56 0.06 -9.51 16 7 N -0.60 -9.10 3.01 -172.46 -0.52 -9.61 16 8 C 0.10 1.44 5.95 -3.61 -0.02 1.42 16 9 C 0.05 0.90 5.15 -3.70 -0.02 0.88 16 10 N -0.54 -10.82 4.83 -235.77 -1.14 -11.96 16 11 C 0.19 4.62 5.11 -4.98 -0.03 4.59 16 12 C -0.55 -14.63 7.75 -34.44 -0.27 -14.90 16 13 H 0.05 1.45 5.88 -52.48 -0.31 1.14 16 14 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 C 0.05 0.95 5.24 -3.70 -0.02 0.93 16 21 C 0.11 1.84 6.58 -3.60 -0.02 1.81 16 22 N -0.50 -5.82 3.78 -228.03 -0.86 -6.68 16 23 C 0.04 0.41 5.23 -3.82 -0.02 0.39 16 24 C -0.15 -1.39 9.76 37.16 0.36 -1.03 16 25 C 0.03 0.34 4.78 -3.82 -0.02 0.32 16 26 C -0.14 -1.41 9.86 37.16 0.37 -1.04 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 30 H 0.07 0.89 6.04 -51.93 -0.31 0.58 16 31 H 0.08 0.95 6.84 -51.93 -0.36 0.59 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.92 4.82 -51.93 -0.25 0.67 16 34 H 0.04 0.87 6.79 -51.93 -0.35 0.52 16 35 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 36 H 0.03 0.75 8.07 -51.93 -0.42 0.34 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 39 H 0.04 0.86 6.92 -51.93 -0.36 0.50 16 40 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 41 H 0.08 1.39 7.09 -51.93 -0.37 1.02 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.71 5.80 -51.93 -0.30 0.41 16 44 H 0.07 0.78 6.48 -51.93 -0.34 0.45 16 45 H 0.05 0.49 6.95 -51.93 -0.36 0.13 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.07 1.03 5.76 -51.93 -0.30 0.73 16 49 H 0.07 0.90 5.44 -51.93 -0.28 0.62 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.05 0.48 6.82 -51.93 -0.35 0.12 16 52 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -28.97 380.50 -9.83 -38.79 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -9.12 Total: 1.45 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 0.30 Total: 0.55 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -1.78 Total: -53.01 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.06 Total: -9.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.97 -9.83 -38.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.228 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds