Wall clock time and date at job start Tue Mar 31 2020 10:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47203 * 2 1 4 4 H 1.08995 * 109.46828 * 60.55069 * 3 2 1 5 5 C 1.50704 * 109.46875 * 180.55294 * 3 2 1 6 6 O 1.21279 * 120.00204 * 102.93652 * 5 3 2 7 7 N 1.34781 * 119.99566 * 282.93106 * 5 3 2 8 8 C 1.47073 * 120.88347 * 355.76388 * 7 5 3 9 9 C 1.53237 * 108.52413 * 129.08502 * 8 7 5 10 10 N 1.46905 * 109.33969 * 53.82569 * 9 8 7 11 11 C 1.46900 * 110.99895 * 172.74401 * 10 9 8 12 12 C 1.50702 * 109.47102 * 59.39114 * 11 10 9 13 13 H 1.08007 * 119.99763 * 5.04748 * 12 11 10 14 14 C 1.37868 * 120.00330 * 185.05479 * 12 11 10 15 15 N 1.31524 * 119.99908 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00285 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47504 * 59.99548 * 16 14 12 18 18 H 1.48507 * 109.47397 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47153 * 299.99441 * 16 14 12 20 20 C 1.46896 * 111.27045 * 296.89986 * 10 9 8 21 21 C 1.47082 * 120.87662 * 176.03981 * 7 5 3 22 22 N 1.46900 * 109.47152 * 300.54935 * 3 2 1 23 23 C 1.46897 * 110.99879 * 180.46166 * 22 3 2 24 24 C 1.53004 * 109.46858 * 290.91286 * 23 22 3 25 25 C 1.46901 * 111.00066 * 304.41305 * 22 3 2 26 26 C 1.52998 * 109.47099 * 163.59056 * 25 22 3 27 27 H 1.08995 * 109.47501 * 185.11089 * 1 2 3 28 28 H 1.08995 * 109.46830 * 305.11324 * 1 2 3 29 29 H 1.08997 * 109.46680 * 65.11140 * 1 2 3 30 30 H 1.09003 * 109.47180 * 240.00031 * 2 1 3 31 31 H 1.08996 * 109.47132 * 120.00180 * 2 1 3 32 32 H 1.09003 * 109.63005 * 248.79273 * 8 7 5 33 33 H 1.09004 * 109.63368 * 9.37507 * 8 7 5 34 34 H 1.08997 * 109.49606 * 293.86865 * 9 8 7 35 35 H 1.08997 * 109.49642 * 173.78841 * 9 8 7 36 36 H 1.09001 * 109.47074 * 179.38447 * 11 10 9 37 37 H 1.08993 * 109.47568 * 299.38672 * 11 10 9 38 38 H 0.97001 * 119.99634 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.49300 * 303.14115 * 20 10 9 40 40 H 1.09000 * 109.49055 * 183.06279 * 20 10 9 41 41 H 1.08999 * 109.62877 * 350.62124 * 21 7 5 42 42 H 1.08995 * 109.62864 * 111.20567 * 21 7 5 43 43 H 1.09001 * 109.47518 * 50.91318 * 23 22 3 44 44 H 1.09003 * 109.47422 * 170.91811 * 23 22 3 45 45 H 1.09005 * 109.47126 * 66.15929 * 24 23 22 46 46 H 1.09005 * 109.47200 * 186.15864 * 24 23 22 47 47 H 1.09004 * 109.47455 * 306.15849 * 24 23 22 48 48 H 1.09003 * 109.47374 * 283.59285 * 25 22 3 49 49 H 1.09001 * 109.47058 * 43.59256 * 25 22 3 50 50 H 1.09000 * 109.46938 * 306.41267 * 26 25 22 51 51 H 1.08997 * 109.47147 * 66.40656 * 26 25 22 52 52 H 1.08997 * 109.47513 * 186.41158 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6848 1.9534 0.8949 5 6 3.5470 1.4425 -0.0137 6 8 4.1441 1.6809 -1.0421 7 7 4.2311 1.1776 1.1169 8 6 3.5300 0.9772 2.3942 9 6 4.0267 -0.3291 3.0226 10 7 5.4924 -0.2970 3.1169 11 6 5.9969 -1.4538 3.8688 12 6 5.5725 -2.7249 3.1794 13 1 5.0574 -2.6789 2.2312 14 6 5.8417 -3.9465 3.7590 15 7 6.4693 -4.0026 4.9135 16 14 5.3150 -5.5220 2.9049 17 1 5.9673 -5.6053 1.5735 18 1 5.7195 -6.6903 3.7276 19 1 3.8398 -5.5233 2.7342 20 6 6.1105 -0.2236 1.7864 21 6 5.6991 1.0871 1.1073 22 7 1.5396 2.1389 -1.1927 23 6 2.0193 3.5267 -1.2321 24 6 1.3493 4.3297 -0.1152 25 6 1.9114 1.4184 -2.4178 26 6 1.0548 1.9177 -3.5830 27 1 -0.3634 -1.0235 0.0915 28 1 -0.3633 0.5911 0.8406 29 1 -0.3632 0.4325 -0.9322 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7439 1.8102 3.0639 33 1 2.4564 0.9130 2.2165 34 1 3.7206 -1.1709 2.4016 35 1 3.6004 -0.4382 4.0198 36 1 7.0851 -1.4111 3.9141 37 1 5.5902 -1.4356 4.8798 38 1 6.6590 -4.8621 5.3211 39 1 5.7754 -1.0668 1.1826 40 1 7.1954 -0.2562 1.8870 41 1 6.0597 1.0955 0.0787 42 1 6.1215 1.9306 1.6533 43 1 3.1002 3.5418 -1.0922 44 1 1.7715 3.9697 -2.1968 45 1 1.6837 3.9552 0.8524 46 1 1.6199 5.3813 -0.2111 47 1 0.2670 4.2247 -0.1911 48 1 2.9640 1.5960 -2.6384 49 1 1.7451 0.3506 -2.2760 50 1 0.0005 1.8452 -3.3159 51 1 1.3043 2.9566 -3.7984 52 1 1.2491 1.3070 -4.4646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602209011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:41 Heat of formation + Delta-G solvation = -40.195649 kcal Electronic energy + Delta-G solvation = -28483.368980 eV Core-core repulsion = 24903.290702 eV Total energy + Delta-G solvation = -3580.078278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89490 -39.68013 -38.01980 -36.16186 -34.73007 -34.14857 -32.81140 -32.10444 -30.28981 -29.74850 -27.65475 -26.71191 -24.60108 -24.28092 -23.85604 -23.09554 -22.31217 -21.15243 -19.69325 -18.51400 -18.27830 -17.37316 -16.87582 -16.76924 -16.54621 -16.10646 -15.96330 -15.66469 -15.45316 -15.30384 -14.89795 -14.73115 -14.29477 -14.14898 -13.80387 -13.61971 -13.54477 -13.07349 -13.03357 -12.98452 -12.92575 -12.90552 -12.58967 -12.48313 -12.45558 -12.37779 -12.21347 -12.18011 -11.96702 -11.85381 -11.79464 -11.64775 -11.55108 -11.33463 -11.10818 -10.62995 -9.76854 -9.15767 -9.07119 -8.18801 -6.38011 1.34458 1.35456 1.43343 1.49666 1.96746 2.34181 2.85545 3.06630 3.27851 3.43859 3.78400 3.96641 3.98616 4.05446 4.08937 4.23282 4.31839 4.33857 4.38310 4.46398 4.50467 4.56126 4.57376 4.61680 4.69688 4.70474 4.75467 4.81236 4.87181 4.96049 5.00510 5.03210 5.11267 5.14939 5.16684 5.20154 5.22520 5.24964 5.30092 5.34185 5.41575 5.46826 5.54856 5.70835 5.96292 5.99292 6.08467 6.15808 6.42400 6.42982 6.81762 7.09001 7.33680 8.83521 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.003822 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.584152 B = 7325.199303 C = 7943.669952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.124 0.876 5 C 0.485 3.515 6 O -0.577 6.577 7 N -0.607 5.607 8 C 0.116 3.884 9 C 0.051 3.949 10 N -0.536 5.536 11 C 0.201 3.799 12 C -0.557 4.557 13 H 0.051 0.949 14 C 0.017 3.983 15 N -0.923 5.923 16 Si 0.950 3.050 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.057 3.943 21 C 0.125 3.875 22 N -0.495 5.495 23 C 0.037 3.963 24 C -0.141 4.141 25 C 0.030 3.970 26 C -0.136 4.136 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.022 0.978 35 H 0.081 0.919 36 H 0.003 0.997 37 H 0.016 0.984 38 H 0.266 0.734 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.024 0.976 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.040 0.960 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.051 0.949 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 14.098 -10.217 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.040 4.040 4 H 0.142 0.858 5 C 0.274 3.726 6 O -0.458 6.458 7 N -0.339 5.339 8 C -0.006 4.006 9 C -0.078 4.078 10 N -0.260 5.260 11 C 0.075 3.925 12 C -0.596 4.596 13 H 0.069 0.931 14 C -0.183 4.183 15 N -0.562 5.562 16 Si 0.776 3.224 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.192 1.192 20 C -0.072 4.072 21 C 0.002 3.998 22 N -0.218 5.218 23 C -0.091 4.091 24 C -0.199 4.199 25 C -0.098 4.098 26 C -0.193 4.193 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.040 0.960 35 H 0.100 0.900 36 H 0.021 0.979 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.042 0.958 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.059 0.941 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.070 0.930 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.775 14.555 -10.337 22.549 hybrid contribution 1.311 -2.115 -0.550 2.548 sum -12.464 12.440 -10.887 20.704 Atomic orbital electron populations 1.21555 0.92205 1.01701 1.03247 1.21642 0.99077 0.92560 1.02189 1.22079 0.86584 0.98033 0.97344 0.85826 1.22576 0.92449 0.75214 0.82371 1.90594 1.71874 1.51106 1.32189 1.48469 1.07233 1.68977 1.09248 1.22104 0.97378 0.97564 0.83599 1.22276 0.88745 0.95993 1.00746 1.62417 1.06017 1.42246 1.15279 1.19420 0.94137 0.85840 0.93109 1.21892 1.38236 0.93068 1.06412 0.93112 1.25722 0.94883 1.02303 0.95365 1.70039 1.41662 1.26519 1.17992 0.85727 0.79069 0.79173 0.78456 1.20166 1.20536 1.19233 1.22180 0.99352 0.95611 0.90059 1.21597 0.80255 0.97201 1.00730 1.62675 1.56020 1.02043 1.01021 1.22277 0.97329 0.88506 1.00941 1.21751 1.01696 0.99282 0.97137 1.22381 0.98732 0.98382 0.90287 1.21704 1.00335 1.00833 0.96474 0.92598 0.91398 0.91624 0.92669 0.91300 0.89243 0.87067 0.95953 0.90025 0.97855 0.96630 0.92515 0.96859 0.90925 0.90267 0.90073 0.95760 0.90195 0.93240 0.91479 0.90948 0.94146 0.91267 0.91451 0.92977 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.67 71.98 0.70 -1.51 16 2 C -0.12 -2.53 4.72 30.60 0.14 -2.39 16 3 C 0.07 1.59 1.22 44.17 0.05 1.64 16 4 H 0.12 2.29 5.44 -2.39 -0.01 2.27 16 5 C 0.49 14.05 6.00 87.66 0.53 14.58 16 6 O -0.58 -20.10 11.64 -3.03 -0.04 -20.13 16 7 N -0.61 -17.65 3.01 -817.94 -2.46 -20.12 16 8 C 0.12 2.94 5.95 86.35 0.51 3.45 16 9 C 0.05 1.78 5.15 86.38 0.45 2.22 16 10 N -0.54 -21.70 4.83 -899.84 -4.35 -26.05 16 11 C 0.20 10.19 5.11 85.56 0.44 10.63 16 12 C -0.56 -30.09 7.75 25.60 0.20 -29.89 16 13 H 0.05 2.74 5.88 -2.91 -0.02 2.73 16 14 C 0.02 0.95 5.46 84.65 0.46 1.41 16 15 N -0.92 -53.72 13.29 21.45 0.28 -53.44 16 16 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 C 0.06 2.19 5.24 86.38 0.45 2.65 16 21 C 0.13 3.99 6.58 86.35 0.57 4.56 16 22 N -0.49 -10.51 3.78 -875.36 -3.30 -13.81 16 23 C 0.04 0.78 5.23 86.31 0.45 1.23 16 24 C -0.14 -2.25 9.76 71.98 0.70 -1.55 16 25 C 0.03 0.69 4.78 86.30 0.41 1.10 16 26 C -0.14 -2.44 9.86 71.98 0.71 -1.73 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.13 7.71 -2.39 -0.02 1.11 16 30 H 0.05 1.37 6.04 -2.39 -0.01 1.35 16 31 H 0.07 1.60 6.84 -2.39 -0.02 1.58 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.11 2.18 4.82 -2.38 -0.01 2.16 16 34 H 0.02 0.87 6.79 -2.39 -0.02 0.86 16 35 H 0.08 2.78 8.11 -2.39 -0.02 2.76 16 36 H 0.00 0.18 8.07 -2.39 -0.02 0.16 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.01 0.57 6.92 -2.39 -0.02 0.56 16 40 H 0.07 2.80 8.05 -2.39 -0.02 2.78 16 41 H 0.08 2.63 7.09 -2.39 -0.02 2.61 16 42 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.02 0.65 5.80 -2.39 -0.01 0.64 16 44 H 0.08 1.56 6.48 -2.39 -0.02 1.54 16 45 H 0.05 0.80 6.95 -2.38 -0.02 0.78 16 46 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.04 1.20 5.76 -2.39 -0.01 1.18 16 49 H 0.07 1.66 5.44 -2.39 -0.01 1.64 16 50 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 0.91 6.82 -2.39 -0.02 0.89 16 52 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -63.55 380.50 -0.17 -63.72 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.89 Total: 18.10 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.78 Total: 6.41 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -9.83 Total: -113.41 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.04 Total: -20.13 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -63.55 -0.17 -63.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.524 kcal (2) G-P(sol) polarization free energy of solvation -63.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds