Wall clock time and date at job start Tue Mar 31 2020 09:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46909 * 2 1 4 4 C 1.42896 * 113.99794 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.86710 * 18.74184 * 4 3 2 6 6 C 1.53858 * 113.63882 * 247.36544 * 4 3 2 7 7 C 1.53860 * 87.16172 * 270.60035 * 6 4 3 8 8 H 1.08995 * 113.71685 * 89.41343 * 7 6 4 9 9 O 1.42904 * 113.63193 * 220.37539 * 7 6 4 10 10 C 1.53339 * 113.63474 * 150.00261 * 4 3 2 11 11 C 1.52795 * 113.61500 * 204.05140 * 10 4 3 12 12 C 1.53203 * 109.00838 * 184.87548 * 11 10 4 13 13 N 1.46841 * 109.44510 * 303.08723 * 12 11 10 14 14 C 1.46901 * 111.00015 * 187.77037 * 13 12 11 15 15 C 1.52999 * 109.47218 * 51.82649 * 14 13 12 16 16 H 1.09000 * 109.47610 * 301.82534 * 15 14 13 17 17 C 1.53005 * 109.46936 * 61.82199 * 15 14 13 18 18 C 1.52999 * 109.47472 * 181.82157 * 15 14 13 19 19 C 1.50698 * 109.47460 * 175.00232 * 18 15 14 20 20 H 1.08005 * 119.99739 * 0.02562 * 19 18 15 21 21 C 1.37877 * 120.00038 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00018 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99891 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47088 * 90.00456 * 23 21 19 25 25 H 1.48502 * 109.47008 * 210.00037 * 23 21 19 26 26 H 1.48498 * 109.47268 * 330.00017 * 23 21 19 27 27 C 1.46829 * 111.43242 * 63.50052 * 13 12 11 28 28 C 1.52792 * 113.61221 * 334.59861 * 10 4 3 29 29 H 1.08995 * 109.47156 * 299.99749 * 1 2 3 30 30 H 1.08996 * 109.46782 * 59.99868 * 1 2 3 31 31 H 1.09000 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47110 * 240.00351 * 2 1 3 33 33 H 1.08996 * 109.47236 * 119.99850 * 2 1 3 34 34 H 1.09003 * 113.60532 * 156.02536 * 6 4 3 35 35 H 1.09000 * 113.59725 * 25.16711 * 6 4 3 36 36 H 0.96695 * 114.00400 * 277.35228 * 9 7 6 37 37 H 1.08998 * 109.54532 * 304.73039 * 11 10 4 38 38 H 1.08999 * 109.54592 * 65.01347 * 11 10 4 39 39 H 1.09001 * 109.47289 * 183.09896 * 12 11 10 40 40 H 1.08998 * 109.48126 * 63.08318 * 12 11 10 41 41 H 1.08995 * 109.47405 * 171.82836 * 14 13 12 42 42 H 1.09008 * 109.47000 * 291.83530 * 14 13 12 43 43 H 1.09006 * 109.47009 * 299.99854 * 17 15 14 44 44 H 1.09000 * 109.46697 * 59.99776 * 17 15 14 45 45 H 1.09000 * 109.47309 * 180.02562 * 17 15 14 46 46 H 1.08997 * 109.46987 * 295.00470 * 18 15 14 47 47 H 1.08998 * 109.47010 * 55.00206 * 18 15 14 48 48 H 0.96996 * 120.00441 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.47402 * 176.49778 * 27 13 12 50 50 H 1.09003 * 109.47960 * 56.49422 * 27 13 12 51 51 H 1.09000 * 109.54968 * 294.97918 * 28 10 4 52 52 H 1.09000 * 109.54729 * 55.27266 * 28 10 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9283 0.5454 -0.3218 6 6 4.0025 2.0498 1.3017 7 6 3.8475 3.4357 0.6515 8 1 2.8768 3.8979 0.8308 9 8 4.9401 4.3179 0.9161 10 6 3.9479 2.7214 -0.7017 11 6 5.3795 2.5904 -1.2193 12 6 5.8297 3.9396 -1.7886 13 7 4.8956 4.3629 -2.8396 14 6 5.3922 5.5576 -3.5353 15 6 6.8289 5.3156 -4.0023 16 1 7.4551 5.0767 -3.1426 17 6 6.8540 4.1486 -4.9914 18 6 7.3619 6.5759 -4.6868 19 6 8.8146 6.3812 -5.0371 20 1 9.3083 5.4513 -4.7959 21 6 9.5135 7.3900 -5.6654 22 7 10.7812 7.2199 -5.9715 23 14 8.6594 8.9979 -6.0831 24 1 8.8028 9.9441 -4.9476 25 1 9.2780 9.5858 -7.2984 26 1 7.2185 8.7421 -6.3355 27 6 3.5487 4.5895 -2.3008 28 6 2.9887 3.2716 -1.7561 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 5.0389 1.7693 1.4896 35 1 3.3587 1.8999 2.1684 36 1 4.8822 4.7713 1.7683 37 1 6.0384 2.3020 -0.4004 38 1 5.4162 1.8334 -2.0027 39 1 6.8301 3.8407 -2.2099 40 1 5.8426 4.6840 -0.9925 41 1 4.7597 5.7647 -4.3984 42 1 5.3698 6.4095 -2.8556 43 1 6.4743 3.2507 -4.5036 44 1 6.2278 4.3875 -5.8510 45 1 7.8776 3.9758 -5.3237 46 1 6.7911 6.7644 -5.5960 47 1 7.2617 7.4259 -4.0120 48 1 11.2728 7.9295 -6.4139 49 1 2.8983 4.9612 -3.0926 50 1 3.5977 5.3236 -1.4964 51 1 2.8902 2.5532 -2.5699 52 1 2.0128 3.4490 -1.3042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:30 Heat of formation + Delta-G solvation = -81.294660 kcal Electronic energy + Delta-G solvation = -27628.641864 eV Core-core repulsion = 24014.488648 eV Total energy + Delta-G solvation = -3614.153216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00852 -38.18341 -37.11427 -35.27591 -34.23790 -32.20005 -31.27729 -30.67462 -30.15166 -27.34538 -25.68798 -24.55037 -23.73068 -23.31484 -22.85306 -21.85601 -20.55780 -18.79465 -18.38106 -17.69196 -16.76372 -16.64538 -16.08658 -15.93160 -15.00459 -14.57599 -14.44311 -14.24617 -14.10015 -13.97886 -13.77703 -13.40029 -13.13067 -12.85401 -12.81792 -12.57008 -12.29416 -12.17725 -11.92670 -11.73268 -11.65568 -11.59044 -11.52006 -11.30023 -10.96473 -10.87673 -10.65849 -10.62417 -10.55318 -10.19296 -10.09332 -9.81388 -9.76789 -9.54153 -9.42374 -9.30400 -8.93658 -8.45625 -7.81931 -5.96351 -3.92572 3.21946 3.35804 3.42997 3.47704 4.01541 4.22551 4.33623 4.38104 4.52342 4.54022 4.72647 4.78173 4.83745 5.01164 5.03707 5.07237 5.22325 5.30775 5.37533 5.41381 5.48119 5.55502 5.58714 5.61177 5.67700 5.73688 5.76572 5.78413 5.83484 5.91111 6.03393 6.10701 6.16096 6.18820 6.24887 6.35724 6.44828 6.49034 6.60752 6.69152 6.95377 6.96320 7.14329 7.22526 7.36737 7.51781 7.54795 7.56052 7.62073 7.89919 8.64012 9.09705 9.66996 11.17170 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.002768 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.128082 B =10113.785901 C =10299.498314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.364 6.364 4 C 0.072 3.928 5 H 0.079 0.921 6 C -0.187 4.187 7 C 0.092 3.908 8 H 0.080 0.920 9 O -0.548 6.548 10 C -0.061 4.061 11 C -0.079 4.079 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.060 3.940 15 C -0.077 4.077 16 H 0.064 0.936 17 C -0.123 4.123 18 C -0.009 4.009 19 C -0.509 4.509 20 H 0.073 0.927 21 C 0.064 3.936 22 N -0.906 5.906 23 Si 0.878 3.122 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.266 1.266 27 C 0.058 3.942 28 C -0.091 4.091 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.371 0.629 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.044 0.956 44 H 0.039 0.961 45 H 0.057 0.943 46 H 0.015 0.985 47 H 0.007 0.993 48 H 0.261 0.739 49 H 0.067 0.933 50 H 0.029 0.971 51 H 0.070 0.930 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.301 -13.571 15.932 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.283 6.283 4 C 0.014 3.986 5 H 0.097 0.903 6 C -0.225 4.225 7 C 0.033 3.967 8 H 0.098 0.902 9 O -0.353 6.353 10 C -0.062 4.062 11 C -0.117 4.117 12 C -0.076 4.076 13 N -0.259 5.259 14 C -0.067 4.067 15 C -0.096 4.096 16 H 0.082 0.918 17 C -0.181 4.181 18 C -0.047 4.047 19 C -0.547 4.547 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.546 5.546 23 Si 0.706 3.294 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.190 1.190 27 C -0.071 4.071 28 C -0.128 4.128 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.218 0.782 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.025 0.975 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.089 0.911 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.126 -13.914 14.913 28.654 hybrid contribution -0.358 1.546 0.950 1.849 sum -20.484 -12.368 15.863 28.709 Atomic orbital electron populations 1.21742 0.93726 1.02229 1.03144 1.22527 0.95512 0.83856 1.00082 1.87867 1.19607 1.26254 1.94530 1.22873 0.81463 0.97958 0.96349 0.90304 1.24176 1.01981 0.98397 0.97949 1.23319 0.89702 0.87876 0.95850 0.90190 1.86629 1.46023 1.61211 1.41442 1.22062 0.97098 0.93305 0.93733 1.21207 0.92408 0.98543 0.99547 1.22211 0.96643 0.95736 0.93020 1.61888 1.01629 1.34623 1.27798 1.22269 0.97733 0.89623 0.97058 1.21122 0.92422 0.97577 0.98458 0.91799 1.21590 1.01437 0.96977 0.98072 1.19615 0.97114 0.92794 0.95212 1.21137 0.93465 1.02400 1.37725 0.90864 1.25029 0.94692 0.98469 0.95484 1.69916 1.08540 1.33630 1.42514 0.86806 0.80435 0.84263 0.77927 1.20489 1.21546 1.19048 1.22029 0.91109 0.96176 0.97746 1.21339 0.97115 0.97049 0.97329 0.91974 0.91714 0.91150 0.93181 0.93534 0.88569 0.91018 0.78228 0.91471 0.91450 0.89828 0.92880 0.91487 0.95742 0.93731 0.94186 0.92390 0.96658 0.97451 0.92910 0.91440 0.95253 0.91123 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.42 6.50 37.16 0.24 0.66 16 3 O -0.36 -3.51 9.16 -35.23 -0.32 -3.83 16 4 C 0.07 0.68 3.82 -26.11 -0.10 0.58 16 5 H 0.08 0.69 7.82 -51.93 -0.41 0.28 16 6 C -0.19 -1.63 7.40 -25.84 -0.19 -1.82 16 7 C 0.09 0.92 4.44 -26.10 -0.12 0.80 16 8 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 9 O -0.55 -5.82 10.78 -35.23 -0.38 -6.20 16 10 C -0.06 -0.67 0.75 -154.37 -0.12 -0.79 16 11 C -0.08 -0.98 4.83 -26.73 -0.13 -1.11 16 12 C 0.05 0.77 4.85 -3.75 -0.02 0.75 16 13 N -0.53 -8.25 4.04 -234.47 -0.95 -9.20 16 14 C 0.06 1.07 4.54 -3.82 -0.02 1.05 16 15 C -0.08 -1.58 1.85 -90.62 -0.17 -1.75 16 16 H 0.06 1.35 6.04 -51.93 -0.31 1.04 16 17 C -0.12 -2.44 8.79 37.16 0.33 -2.12 16 18 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 19 C -0.51 -14.67 8.96 -34.44 -0.31 -14.98 16 20 H 0.07 2.26 7.30 -52.48 -0.38 1.88 16 21 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 22 N -0.91 -28.42 13.96 55.43 0.77 -27.64 16 23 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.27 -6.51 6.54 56.52 0.37 -6.15 16 27 C 0.06 0.78 5.41 -3.76 -0.02 0.75 16 28 C -0.09 -1.06 4.83 -26.73 -0.13 -1.19 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.10 0.83 7.64 -51.93 -0.40 0.43 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.37 2.48 9.12 45.56 0.42 2.89 16 37 H 0.07 0.79 7.31 -51.93 -0.38 0.41 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.39 5.61 -51.93 -0.29 1.10 16 40 H 0.05 0.85 6.03 -51.93 -0.31 0.54 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.04 0.80 7.54 -51.93 -0.39 0.40 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 46 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 47 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 48 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 49 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 50 H 0.03 0.41 8.07 -51.93 -0.42 -0.01 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 52 H 0.07 0.77 7.55 -51.93 -0.39 0.38 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -31.90 388.13 -9.31 -41.20 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -9.05 Total: 0.43 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -0.56 Total: -18.24 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.17 Total: -36.84 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.70 Total: -10.03 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.90 -9.31 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.093 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds