Wall clock time and date at job start Tue Mar 31 2020 09:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46909 * 2 1 4 4 C 1.42896 * 113.99794 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.86710 * 18.74184 * 4 3 2 6 6 C 1.53858 * 113.63882 * 247.36544 * 4 3 2 7 7 C 1.53860 * 87.16172 * 270.60035 * 6 4 3 8 8 H 1.08995 * 113.71685 * 89.41343 * 7 6 4 9 9 O 1.42904 * 113.63193 * 220.37539 * 7 6 4 10 10 C 1.53339 * 113.63474 * 150.00261 * 4 3 2 11 11 C 1.52795 * 113.61500 * 204.05140 * 10 4 3 12 12 C 1.53203 * 109.00838 * 184.87548 * 11 10 4 13 13 N 1.46841 * 109.44510 * 303.08723 * 12 11 10 14 14 C 1.46901 * 111.00015 * 187.77037 * 13 12 11 15 15 C 1.52999 * 109.47218 * 51.82649 * 14 13 12 16 16 H 1.09000 * 109.47610 * 301.82534 * 15 14 13 17 17 C 1.53005 * 109.46936 * 61.82199 * 15 14 13 18 18 C 1.52999 * 109.47472 * 181.82157 * 15 14 13 19 19 C 1.50698 * 109.47460 * 175.00232 * 18 15 14 20 20 H 1.08005 * 119.99739 * 0.02562 * 19 18 15 21 21 C 1.37877 * 120.00038 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00018 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99891 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47088 * 90.00456 * 23 21 19 25 25 H 1.48502 * 109.47008 * 210.00037 * 23 21 19 26 26 H 1.48498 * 109.47268 * 330.00017 * 23 21 19 27 27 C 1.46829 * 111.43242 * 63.50052 * 13 12 11 28 28 C 1.52792 * 113.61221 * 334.59861 * 10 4 3 29 29 H 1.08995 * 109.47156 * 299.99749 * 1 2 3 30 30 H 1.08996 * 109.46782 * 59.99868 * 1 2 3 31 31 H 1.09000 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47110 * 240.00351 * 2 1 3 33 33 H 1.08996 * 109.47236 * 119.99850 * 2 1 3 34 34 H 1.09003 * 113.60532 * 156.02536 * 6 4 3 35 35 H 1.09000 * 113.59725 * 25.16711 * 6 4 3 36 36 H 0.96695 * 114.00400 * 277.35228 * 9 7 6 37 37 H 1.08998 * 109.54532 * 304.73039 * 11 10 4 38 38 H 1.08999 * 109.54592 * 65.01347 * 11 10 4 39 39 H 1.09001 * 109.47289 * 183.09896 * 12 11 10 40 40 H 1.08998 * 109.48126 * 63.08318 * 12 11 10 41 41 H 1.08995 * 109.47405 * 171.82836 * 14 13 12 42 42 H 1.09008 * 109.47000 * 291.83530 * 14 13 12 43 43 H 1.09006 * 109.47009 * 299.99854 * 17 15 14 44 44 H 1.09000 * 109.46697 * 59.99776 * 17 15 14 45 45 H 1.09000 * 109.47309 * 180.02562 * 17 15 14 46 46 H 1.08997 * 109.46987 * 295.00470 * 18 15 14 47 47 H 1.08998 * 109.47010 * 55.00206 * 18 15 14 48 48 H 0.96996 * 120.00441 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.47402 * 176.49778 * 27 13 12 50 50 H 1.09003 * 109.47960 * 56.49422 * 27 13 12 51 51 H 1.09000 * 109.54968 * 294.97918 * 28 10 4 52 52 H 1.09000 * 109.54729 * 55.27266 * 28 10 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9283 0.5454 -0.3218 6 6 4.0025 2.0498 1.3017 7 6 3.8475 3.4357 0.6515 8 1 2.8768 3.8979 0.8308 9 8 4.9401 4.3179 0.9161 10 6 3.9479 2.7214 -0.7017 11 6 5.3795 2.5904 -1.2193 12 6 5.8297 3.9396 -1.7886 13 7 4.8956 4.3629 -2.8396 14 6 5.3922 5.5576 -3.5353 15 6 6.8289 5.3156 -4.0023 16 1 7.4551 5.0767 -3.1426 17 6 6.8540 4.1486 -4.9914 18 6 7.3619 6.5759 -4.6868 19 6 8.8146 6.3812 -5.0371 20 1 9.3083 5.4513 -4.7959 21 6 9.5135 7.3900 -5.6654 22 7 10.7812 7.2199 -5.9715 23 14 8.6594 8.9979 -6.0831 24 1 8.8028 9.9441 -4.9476 25 1 9.2780 9.5858 -7.2984 26 1 7.2185 8.7421 -6.3355 27 6 3.5487 4.5895 -2.3008 28 6 2.9887 3.2716 -1.7561 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 5.0389 1.7693 1.4896 35 1 3.3587 1.8999 2.1684 36 1 4.8822 4.7713 1.7683 37 1 6.0384 2.3020 -0.4004 38 1 5.4162 1.8334 -2.0027 39 1 6.8301 3.8407 -2.2099 40 1 5.8426 4.6840 -0.9925 41 1 4.7597 5.7647 -4.3984 42 1 5.3698 6.4095 -2.8556 43 1 6.4743 3.2507 -4.5036 44 1 6.2278 4.3875 -5.8510 45 1 7.8776 3.9758 -5.3237 46 1 6.7911 6.7644 -5.5960 47 1 7.2617 7.4259 -4.0120 48 1 11.2728 7.9295 -6.4139 49 1 2.8983 4.9612 -3.0926 50 1 3.5977 5.3236 -1.4964 51 1 2.8902 2.5532 -2.5699 52 1 2.0128 3.4490 -1.3042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602475187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:29 Heat of formation + Delta-G solvation = -102.555956 kcal Electronic energy + Delta-G solvation = -27629.563823 eV Core-core repulsion = 24014.488648 eV Total energy + Delta-G solvation = -3615.075175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84889 -39.32210 -37.95454 -36.55318 -35.40389 -34.19766 -32.02820 -31.79405 -31.15934 -29.26971 -27.06083 -25.36520 -24.94475 -24.40456 -23.56985 -23.35794 -21.61633 -20.36005 -19.33445 -18.91394 -18.45526 -17.50609 -17.01943 -16.55267 -16.44583 -15.97221 -15.76743 -15.54205 -15.24774 -15.00165 -14.85673 -14.67843 -14.27570 -14.10635 -13.92942 -13.65353 -13.50685 -13.23181 -13.15676 -12.97425 -12.79203 -12.76771 -12.48762 -12.38326 -12.32905 -12.18515 -12.05332 -11.93886 -11.78022 -11.60909 -11.48012 -11.32442 -11.16053 -10.96331 -10.79719 -10.72620 -10.49794 -10.24603 -9.08238 -8.25501 -6.27441 1.35366 1.37170 1.49377 2.38027 2.56531 3.04372 3.09480 3.32096 3.53504 3.60389 3.77612 3.95972 4.04271 4.11073 4.22816 4.24928 4.26654 4.35114 4.44025 4.48515 4.50473 4.53908 4.58641 4.62950 4.74832 4.76718 4.82321 4.88874 4.89961 4.91453 4.94166 5.01017 5.05663 5.07561 5.10828 5.16097 5.21226 5.25985 5.30796 5.37828 5.39882 5.44928 5.50584 5.56496 5.72346 5.73462 6.22194 6.32242 6.34937 6.37544 6.79534 6.96687 7.35727 8.91238 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.002768 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.128082 B =10113.785901 C =10299.498314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.377 6.377 4 C 0.078 3.922 5 H 0.086 0.914 6 C -0.176 4.176 7 C 0.093 3.907 8 H 0.082 0.918 9 O -0.567 6.567 10 C -0.070 4.070 11 C -0.072 4.072 12 C 0.054 3.946 13 N -0.535 5.535 14 C 0.071 3.929 15 C -0.071 4.071 16 H 0.051 0.949 17 C -0.112 4.112 18 C -0.006 4.006 19 C -0.516 4.516 20 H 0.035 0.965 21 C 0.001 3.999 22 N -0.953 5.953 23 Si 0.947 3.053 24 H -0.269 1.269 25 H -0.284 1.284 26 H -0.248 1.248 27 C 0.059 3.941 28 C -0.082 4.082 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.387 0.613 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.027 0.973 46 H 0.018 0.982 47 H 0.011 0.989 48 H 0.264 0.736 49 H 0.074 0.926 50 H 0.024 0.976 51 H 0.065 0.935 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.968 -13.677 16.854 31.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.296 6.296 4 C 0.019 3.981 5 H 0.104 0.896 6 C -0.214 4.214 7 C 0.034 3.966 8 H 0.100 0.900 9 O -0.375 6.375 10 C -0.070 4.070 11 C -0.110 4.110 12 C -0.073 4.073 13 N -0.260 5.260 14 C -0.057 4.057 15 C -0.090 4.090 16 H 0.070 0.930 17 C -0.170 4.170 18 C -0.044 4.044 19 C -0.554 4.554 20 H 0.053 0.947 21 C -0.195 4.195 22 N -0.595 5.595 23 Si 0.771 3.229 24 H -0.194 1.194 25 H -0.210 1.210 26 H -0.171 1.171 27 C -0.069 4.069 28 C -0.120 4.120 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.236 0.764 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.037 0.963 47 H 0.029 0.971 48 H 0.073 0.927 49 H 0.092 0.908 50 H 0.043 0.957 51 H 0.084 0.916 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.816 -14.034 15.858 31.129 hybrid contribution 0.517 1.500 0.698 1.733 sum -22.299 -12.534 16.557 30.470 Atomic orbital electron populations 1.21751 0.92928 1.03247 1.02677 1.22706 0.96189 0.82943 1.00727 1.87847 1.19468 1.27725 1.94587 1.22794 0.81708 0.97401 0.96166 0.89619 1.24086 1.02201 0.97143 0.97945 1.23308 0.89603 0.88402 0.95327 0.89996 1.86580 1.46389 1.61637 1.42883 1.22069 0.95923 0.94914 0.94115 1.21106 0.93665 0.96661 0.99564 1.22139 0.95649 0.97059 0.92457 1.61897 1.02584 1.33317 1.28218 1.22048 0.95634 0.90476 0.97512 1.20985 0.94262 0.95957 0.97807 0.93043 1.21464 0.99701 0.97610 0.98181 1.19560 0.94374 0.94805 0.95647 1.21417 0.95689 1.00954 1.37313 0.94718 1.25991 0.95365 1.02697 0.95475 1.70069 1.10394 1.35167 1.43823 0.85697 0.80024 0.79186 0.77970 1.19441 1.21035 1.17126 1.22085 0.89841 0.97202 0.97775 1.21260 0.97533 0.95833 0.97351 0.92162 0.92416 0.89433 0.92891 0.92523 0.88405 0.90095 0.76375 0.90901 0.91646 0.92069 0.93865 0.90764 0.96072 0.91847 0.93656 0.95365 0.96320 0.97108 0.92688 0.90800 0.95740 0.91608 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.05 0.63 6.50 71.98 0.47 1.09 16 3 O -0.38 -6.42 9.16 -148.98 -1.36 -7.78 16 4 C 0.08 1.29 3.82 31.00 0.12 1.41 16 5 H 0.09 1.30 7.82 -2.39 -0.02 1.28 16 6 C -0.18 -2.66 7.40 31.17 0.23 -2.43 16 7 C 0.09 1.68 4.44 31.00 0.14 1.82 16 8 H 0.08 1.46 8.03 -2.39 -0.02 1.44 16 9 O -0.57 -11.28 10.78 -148.98 -1.61 -12.88 16 10 C -0.07 -1.40 0.75 -52.09 -0.04 -1.44 16 11 C -0.07 -1.71 4.83 30.59 0.15 -1.56 16 12 C 0.05 1.62 4.85 86.38 0.42 2.03 16 13 N -0.54 -15.92 4.04 -895.73 -3.62 -19.53 16 14 C 0.07 2.43 4.54 86.30 0.39 2.82 16 15 C -0.07 -2.93 1.85 -10.79 -0.02 -2.95 16 16 H 0.05 2.24 6.04 -2.39 -0.01 2.23 16 17 C -0.11 -4.46 8.79 71.98 0.63 -3.83 16 18 C -0.01 -0.29 3.52 29.85 0.10 -0.19 16 19 C -0.52 -30.48 8.96 25.60 0.23 -30.25 16 20 H 0.03 2.25 7.30 -2.91 -0.02 2.23 16 21 C 0.00 0.04 5.47 84.65 0.46 0.51 16 22 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 23 Si 0.95 45.75 27.47 68.60 1.88 47.63 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 26 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 27 C 0.06 1.48 5.41 86.39 0.47 1.95 16 28 C -0.08 -1.76 4.83 30.59 0.15 -1.62 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 1.47 7.64 -2.39 -0.02 1.45 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.39 4.61 9.12 -74.06 -0.68 3.93 16 37 H 0.07 1.63 7.31 -2.39 -0.02 1.62 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 2.07 5.61 -2.39 -0.01 2.06 16 40 H 0.04 1.38 6.03 -2.39 -0.01 1.36 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.06 2.25 7.54 -2.38 -0.02 2.23 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.03 1.25 6.95 -2.39 -0.02 1.24 16 46 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 47 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 48 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 49 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 50 H 0.02 0.65 8.07 -2.39 -0.02 0.63 16 51 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.08 1.56 7.55 -2.39 -0.02 1.54 16 Total: -1.00 -69.03 388.13 0.38 -68.66 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.14 Total: 18.29 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 4.64 Total: -33.41 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -3.32 Total: -80.50 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -2.97 Total: -20.67 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.63 kcal Total: -69.03 0.38 -68.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.900 kcal (2) G-P(sol) polarization free energy of solvation -69.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds