Wall clock time and date at job start Tue Mar 31 2020 10:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99917 * 2 1 4 4 C 1.53246 * 109.33860 * 172.74587 * 3 2 1 5 5 N 1.47074 * 108.52018 * 53.82573 * 4 3 2 6 6 C 1.34781 * 120.88032 * 128.82310 * 5 4 3 7 7 O 1.21587 * 120.00032 * 185.21484 * 6 5 4 8 8 N 1.34772 * 119.99907 * 5.21080 * 6 5 4 9 9 C 1.46502 * 119.99954 * 175.02695 * 8 6 5 10 10 C 1.53002 * 109.47122 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47188 * 300.00050 * 10 9 8 12 12 C 1.53001 * 109.47434 * 59.99928 * 10 9 8 13 13 C 1.53004 * 109.47233 * 180.02562 * 10 9 8 14 14 C 1.50695 * 109.47190 * 180.02562 * 13 10 9 15 15 H 1.08003 * 120.00129 * 359.97438 * 14 13 10 16 16 C 1.37874 * 120.00019 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00284 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00095 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46752 * 89.99954 * 18 16 14 20 20 H 1.48493 * 109.47585 * 210.00309 * 18 16 14 21 21 H 1.48499 * 109.47043 * 330.00503 * 18 16 14 22 22 C 1.47078 * 118.23927 * 309.08278 * 5 4 3 23 23 C 1.46893 * 111.00211 * 235.69086 * 2 1 3 24 24 C 1.53006 * 109.49722 * 307.21580 * 23 2 1 25 25 C 1.52998 * 109.49301 * 67.27081 * 23 2 1 26 26 H 1.09004 * 109.46686 * 63.95926 * 1 2 3 27 27 H 1.09003 * 109.47019 * 183.95705 * 1 2 3 28 28 H 1.08994 * 109.47418 * 303.96146 * 1 2 3 29 29 H 1.08990 * 109.49824 * 52.78266 * 3 2 1 30 30 H 1.09003 * 109.48715 * 292.69820 * 3 2 1 31 31 H 1.09000 * 109.62504 * 294.11682 * 4 3 2 32 32 H 1.09003 * 109.62675 * 173.53490 * 4 3 2 33 33 H 0.97000 * 120.00452 * 355.03142 * 8 6 5 34 34 H 1.08998 * 109.47063 * 60.00475 * 9 8 6 35 35 H 1.08998 * 109.47124 * 300.00060 * 9 8 6 36 36 H 1.08995 * 109.46822 * 59.99899 * 11 10 9 37 37 H 1.08995 * 109.47442 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.46679 * 299.99976 * 11 10 9 39 39 H 1.08998 * 109.47124 * 59.99516 * 12 10 9 40 40 H 1.08995 * 109.47223 * 180.02562 * 12 10 9 41 41 H 1.09008 * 109.46903 * 300.00232 * 12 10 9 42 42 H 1.08998 * 109.46544 * 300.00006 * 13 10 9 43 43 H 1.08998 * 109.46878 * 59.99320 * 13 10 9 44 44 H 0.97002 * 120.00494 * 179.97438 * 17 16 14 45 45 H 1.09000 * 109.62886 * 170.62498 * 22 5 4 46 46 H 1.08993 * 109.63544 * 291.21151 * 22 5 4 47 47 H 1.08997 * 109.46532 * 59.99692 * 24 23 2 48 48 H 1.08997 * 109.47255 * 179.97438 * 24 23 2 49 49 H 1.08998 * 109.46981 * 300.00198 * 24 23 2 50 50 H 1.08998 * 109.47397 * 59.99579 * 25 23 2 51 51 H 1.09001 * 109.47590 * 180.02562 * 25 23 2 52 52 H 1.09009 * 109.47153 * 299.99773 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5164 1.3311 0.1826 5 7 4.0869 0.4459 -0.8441 6 6 5.1057 0.8581 -1.6243 7 8 5.5025 0.1506 -2.5301 8 7 5.6845 2.0545 -1.4006 9 6 6.8606 2.4557 -2.1766 10 6 7.3172 3.8456 -1.7286 11 6 6.1876 4.8519 -1.9575 12 6 7.6751 3.8103 -0.2415 13 6 8.5451 4.2650 -2.5394 14 6 8.9952 5.6337 -2.0978 15 1 8.4588 6.1528 -1.3172 16 6 10.0910 6.2238 -2.6910 17 7 10.4841 7.4180 -2.3053 18 14 11.0183 5.3263 -4.0416 19 1 10.4295 5.6723 -5.3603 20 1 12.4465 5.7319 -4.0154 21 1 10.9158 3.8611 -3.8230 22 6 3.5124 -0.8989 -1.0006 23 6 1.9955 -0.7730 -1.1327 24 6 1.3641 -2.1667 -1.1374 25 6 1.6582 -0.0554 -2.4412 26 1 -0.3633 0.4512 -0.9234 27 1 -0.3633 -1.0252 0.0709 28 1 -0.3634 0.5740 0.8523 29 1 1.5457 1.9337 0.8182 30 1 1.7556 1.8530 -0.9480 31 1 3.7561 0.9450 1.1733 32 1 3.9256 2.3351 0.0689 33 1 5.3225 2.6499 -0.7258 34 1 6.6057 2.4806 -3.2360 35 1 7.6655 1.7391 -2.0132 36 1 5.3126 4.5533 -1.3802 37 1 6.5129 5.8422 -1.6388 38 1 5.9326 4.8771 -3.0169 39 1 8.4798 3.0934 -0.0784 40 1 8.0000 4.8006 0.0777 41 1 6.8000 3.5117 0.3358 42 1 9.3499 3.5482 -2.3768 43 1 8.2896 4.2902 -3.5988 44 1 11.2554 7.8330 -2.7224 45 1 3.9189 -1.3687 -1.8963 46 1 3.7517 -1.5035 -0.1259 47 1 0.2821 -2.0750 -1.2318 48 1 1.7547 -2.7397 -1.9783 49 1 1.6054 -2.6779 -0.2054 50 1 2.1089 0.9371 -2.4380 51 1 2.0486 -0.6294 -3.2816 52 1 0.5763 0.0373 -2.5364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603430345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:48 Heat of formation + Delta-G solvation = -41.015059 kcal Electronic energy + Delta-G solvation = -27753.416429 eV Core-core repulsion = 24173.302619 eV Total energy + Delta-G solvation = -3580.113810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80976 -40.15907 -38.68254 -35.99302 -35.17748 -34.16810 -33.71421 -30.10860 -29.68614 -28.43630 -28.31132 -27.99475 -27.01227 -25.28286 -24.14547 -23.81743 -21.20147 -20.17790 -19.34957 -18.95900 -18.77228 -17.53790 -16.86300 -16.73925 -16.26752 -16.01072 -15.61178 -15.57696 -15.45074 -15.27343 -14.97865 -14.87171 -14.30291 -14.20130 -14.16113 -13.89873 -13.59264 -13.14985 -13.00014 -12.95021 -12.91165 -12.84128 -12.66844 -12.60046 -12.31178 -12.27709 -12.15724 -12.12796 -11.94499 -11.79884 -11.77121 -11.52025 -11.30826 -11.08920 -10.90415 -10.70186 -10.21402 -9.60640 -9.15741 -8.22165 -6.22026 1.35830 1.38822 1.48856 1.60034 2.11780 2.39304 2.89024 2.93091 3.13378 3.70472 3.84870 3.88378 3.97167 4.04118 4.06195 4.14357 4.23301 4.27796 4.49682 4.52993 4.62755 4.66424 4.67639 4.70606 4.72028 4.76197 4.79383 4.82264 4.92191 4.94077 4.95591 5.01398 5.03093 5.06768 5.09046 5.23516 5.29221 5.33523 5.36017 5.40496 5.47550 5.50479 5.56991 5.69186 5.76172 5.87100 6.08489 6.14913 6.38392 6.84531 6.95356 7.40754 7.53984 8.93329 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.002834 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.017212 B = 9876.798798 C =10317.246232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.532 5.532 3 C 0.038 3.962 4 C 0.112 3.888 5 N -0.626 5.626 6 C 0.702 3.298 7 O -0.636 6.636 8 N -0.727 5.727 9 C 0.158 3.842 10 C -0.057 4.057 11 C -0.122 4.122 12 C -0.121 4.121 13 C -0.003 4.003 14 C -0.500 4.500 15 H 0.054 0.946 16 C 0.007 3.993 17 N -0.951 5.951 18 Si 0.932 3.068 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.252 1.252 22 C 0.144 3.856 23 C 0.096 3.904 24 C -0.136 4.136 25 C -0.170 4.170 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.406 0.594 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.262 0.738 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.041 0.959 51 H 0.052 0.948 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.370 -17.269 7.087 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.091 4.091 4 C -0.011 4.011 5 N -0.363 5.363 6 C 0.403 3.597 7 O -0.518 6.518 8 N -0.385 5.385 9 C 0.034 3.966 10 C -0.057 4.057 11 C -0.179 4.179 12 C -0.179 4.179 13 C -0.041 4.041 14 C -0.538 4.538 15 H 0.072 0.928 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.758 3.242 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.176 1.176 22 C 0.020 3.980 23 C 0.005 3.995 24 C -0.194 4.194 25 C -0.229 4.229 26 H 0.044 0.956 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.246 0.754 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.060 0.940 51 H 0.071 0.929 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.779 -17.872 6.862 29.755 hybrid contribution 0.639 0.965 -1.371 1.794 sum -22.139 -16.907 5.491 28.393 Atomic orbital electron populations 1.22521 0.86112 1.03347 1.00900 1.62206 1.08876 1.12997 1.41538 1.22557 0.94408 0.90212 1.01932 1.21940 0.93257 0.94096 0.91829 1.47298 1.34801 1.16753 1.37439 1.16023 0.80182 0.81833 0.81661 1.90865 1.68100 1.57637 1.35201 1.45200 1.32304 1.17916 1.43108 1.21124 0.86016 0.95069 0.94440 1.20556 0.95972 0.92461 0.96758 1.21681 0.96535 0.98854 1.00810 1.21680 1.00591 1.01530 0.94071 1.19561 0.93966 0.95307 0.95280 1.21354 1.11743 1.01033 1.19711 0.92789 1.25805 0.98435 0.95434 0.99293 1.70033 1.27547 1.16813 1.44847 0.85922 0.77779 0.80392 0.80144 1.19786 1.21445 1.17628 1.21544 0.91599 0.82391 1.02460 1.21323 0.93818 0.95546 0.88824 1.21859 1.01213 0.93339 1.02989 1.22338 1.01619 1.00604 0.98349 0.95608 0.89934 0.90301 0.87319 0.94682 0.89297 0.89273 0.75445 0.93196 0.93050 0.91628 0.93355 0.93837 0.93701 0.93393 0.91514 0.96694 0.96947 0.92862 0.90701 0.90365 0.90805 0.91730 0.90988 0.93968 0.92880 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.77 127.69 1.12 1.30 16 2 N -0.53 -7.10 4.68 -872.53 -4.08 -11.18 16 3 C 0.04 0.49 5.25 86.39 0.45 0.95 16 4 C 0.11 1.70 6.54 86.35 0.56 2.27 16 5 N -0.63 -13.92 2.49 -836.81 -2.08 -16.00 16 6 C 0.70 21.04 8.31 179.05 1.49 22.53 16 7 O -0.64 -24.63 15.80 -3.99 -0.06 -24.69 16 8 N -0.73 -19.99 4.87 -478.53 -2.33 -22.32 16 9 C 0.16 5.28 4.57 86.38 0.39 5.68 16 10 C -0.06 -2.04 0.54 -52.18 -0.03 -2.07 16 11 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 12 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 13 C 0.00 -0.15 3.11 29.85 0.09 -0.05 16 14 C -0.50 -27.13 8.20 25.60 0.21 -26.92 16 15 H 0.05 3.14 5.92 -2.91 -0.02 3.12 16 16 C 0.01 0.38 5.47 84.65 0.46 0.84 16 17 N -0.95 -58.61 13.96 21.45 0.30 -58.32 16 18 Si 0.93 44.68 27.47 68.60 1.88 46.56 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 22 C 0.14 2.92 5.24 86.20 0.45 3.37 16 23 C 0.10 1.48 0.68 3.46 0.00 1.49 16 24 C -0.14 -1.57 8.00 71.98 0.58 -0.99 16 25 C -0.17 -3.06 7.67 71.98 0.55 -2.51 16 26 H 0.03 0.27 6.53 -2.38 -0.02 0.26 16 27 H 0.08 0.67 6.18 -2.39 -0.01 0.66 16 28 H 0.08 0.61 8.08 -2.39 -0.02 0.60 16 29 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 30 H 0.03 0.55 6.10 -2.39 -0.01 0.54 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.20 5.74 -2.39 -0.01 1.19 16 33 H 0.41 8.98 3.70 -92.71 -0.34 8.64 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.68 6.86 -2.39 -0.02 1.67 16 37 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.84 6.62 -2.39 -0.02 1.82 16 41 H 0.07 1.70 6.86 -2.38 -0.02 1.69 16 42 H 0.01 0.68 7.20 -2.39 -0.02 0.67 16 43 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 44 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.07 1.86 7.04 -2.39 -0.02 1.84 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.07 0.68 6.31 -2.39 -0.02 0.67 16 48 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.04 0.92 5.93 -2.39 -0.01 0.90 16 51 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.07 1.02 6.60 -2.38 -0.02 1.00 16 Total: -1.00 -69.68 377.99 1.63 -68.05 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.50 Total: 18.96 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 7.50 Total: -1.06 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -8.19 Total: -107.82 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.06 Total: -24.69 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -69.68 1.63 -68.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603430345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.035 kcal (2) G-P(sol) polarization free energy of solvation -69.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds