Wall clock time and date at job start Tue Mar 31 2020 10:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46726 * 2 1 4 4 N 1.46497 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.46502 * 120.00249 * 269.99936 * 4 3 2 6 6 C 1.52996 * 109.47369 * 269.99784 * 5 4 3 7 7 C 1.52999 * 109.47334 * 174.99531 * 6 5 4 8 8 C 1.52998 * 109.47207 * 295.00277 * 6 5 4 9 9 C 1.34778 * 120.00206 * 89.99506 * 4 3 2 10 10 O 1.21585 * 120.00569 * 180.02562 * 9 4 3 11 11 N 1.34781 * 119.99776 * 0.02562 * 9 4 3 12 12 C 1.46500 * 119.99994 * 179.97438 * 11 9 4 13 13 C 1.53076 * 109.43981 * 84.79590 * 12 11 9 14 14 C 1.53183 * 109.29478 * 181.23571 * 13 12 11 15 15 N 1.46930 * 108.89468 * 305.57480 * 14 13 12 16 16 C 1.36937 * 120.63259 * 233.51494 * 15 14 13 17 17 H 1.08000 * 119.99761 * 151.83401 * 16 15 14 18 18 C 1.38806 * 120.00219 * 331.83653 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46925 * 118.73328 * 53.53726 * 15 14 13 25 25 C 1.53033 * 109.45902 * 204.99610 * 12 11 9 26 26 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47775 * 300.00048 * 1 2 3 28 28 H 1.09002 * 109.47197 * 60.00249 * 1 2 3 29 29 H 1.08997 * 109.47309 * 239.99817 * 2 1 3 30 30 H 1.08996 * 109.46672 * 119.99288 * 2 1 3 31 31 H 1.08997 * 109.47376 * 59.99858 * 3 2 1 32 32 H 1.09001 * 109.47364 * 299.99358 * 3 2 1 33 33 H 1.09000 * 109.46718 * 29.99894 * 5 4 3 34 34 H 1.09005 * 109.47068 * 149.99808 * 5 4 3 35 35 H 1.09005 * 109.46595 * 54.99558 * 6 5 4 36 36 H 1.09004 * 109.46744 * 60.00516 * 7 6 5 37 37 H 1.08999 * 109.46981 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47167 * 300.00535 * 7 6 5 39 39 H 1.09004 * 109.47082 * 299.99613 * 8 6 5 40 40 H 1.08999 * 109.47326 * 59.99229 * 8 6 5 41 41 H 1.08999 * 109.47369 * 179.97438 * 8 6 5 42 42 H 0.97007 * 119.99982 * 359.97438 * 11 9 4 43 43 H 1.08994 * 109.45870 * 324.97548 * 12 11 9 44 44 H 1.09005 * 109.39190 * 61.35477 * 13 12 11 45 45 H 1.09004 * 109.62337 * 301.25270 * 13 12 11 46 46 H 1.09005 * 109.58619 * 185.72200 * 14 13 12 47 47 H 1.08998 * 109.58733 * 65.43770 * 14 13 12 48 48 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 49 49 H 1.09001 * 109.58688 * 66.18006 * 24 15 14 50 50 H 1.08996 * 109.58570 * 186.45714 * 24 15 14 51 51 H 1.09003 * 109.49897 * 58.68032 * 25 12 11 52 52 H 1.09000 * 109.52987 * 298.59684 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2369 1.4429 1.2696 6 6 4.4917 2.8854 1.7112 7 6 5.1446 2.8875 3.0949 8 6 5.4218 3.5693 0.7072 9 6 4.1793 1.4424 -1.1663 10 8 5.3951 1.4420 -1.1658 11 7 3.5059 1.4426 -2.3338 12 6 4.2389 1.4429 -3.6022 13 6 4.6073 0.0055 -3.9781 14 6 5.4002 0.0124 -5.2888 15 7 4.6230 0.7260 -6.3113 16 6 4.3511 0.1379 -7.5177 17 1 3.4611 0.4130 -8.0641 18 6 5.2194 -0.8117 -8.0383 19 7 6.4442 -0.9123 -7.5669 20 14 4.6496 -1.9471 -9.4079 21 1 3.2410 -1.6327 -9.7575 22 1 5.5106 -1.7530 -10.6021 23 1 4.7443 -3.3576 -8.9532 24 6 4.1436 2.0828 -6.0148 25 6 3.3617 2.0528 -4.6979 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5137 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.6475 0.9291 2.0291 34 1 5.1894 0.9290 1.1397 35 1 3.5453 3.4244 1.7552 36 1 6.0911 2.3485 3.0508 37 1 5.3257 3.9152 3.4096 38 1 4.4819 2.4002 3.8101 39 1 6.3683 3.0303 0.6632 40 1 4.9567 3.5678 -0.2785 41 1 5.6030 4.5972 1.0215 42 1 2.5358 1.4425 -2.3342 43 1 5.1492 2.0327 -3.4954 44 1 3.6966 -0.5797 -4.1068 45 1 5.2148 -0.4354 -3.1877 46 1 5.5774 -1.0128 -5.6140 47 1 6.3540 0.5173 -5.1361 48 1 7.0510 -1.5756 -7.9309 49 1 4.9939 2.7582 -5.9196 50 1 3.4938 2.4249 -6.8203 51 1 3.0826 3.0684 -4.4172 52 1 2.4623 1.4497 -4.8225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609340196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:03 Heat of formation + Delta-G solvation = -27.077449 kcal Electronic energy + Delta-G solvation = -27697.595948 eV Core-core repulsion = 24118.086518 eV Total energy + Delta-G solvation = -3579.509430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.36271 -37.81730 -36.42730 -35.54519 -34.14276 -32.60105 -31.89060 -29.97578 -29.38735 -27.19742 -27.00596 -25.87888 -24.56855 -22.23510 -22.08472 -21.80211 -20.44127 -19.61555 -19.10967 -17.97157 -16.75749 -16.46836 -15.58817 -15.11543 -14.98238 -14.71673 -14.52845 -14.10111 -13.83875 -13.59786 -13.52000 -13.43561 -12.98755 -12.95007 -12.59053 -12.44651 -12.40117 -12.25236 -11.99834 -11.81471 -11.68169 -11.44243 -11.20269 -11.10252 -11.03514 -10.94160 -10.83642 -10.74837 -10.71541 -10.32336 -10.17730 -10.02016 -9.82070 -9.70919 -9.48801 -8.75062 -8.49763 -8.30152 -6.64662 -5.75321 -3.18456 2.76928 3.38966 3.44718 3.46566 3.48661 4.04584 4.51854 4.60986 4.67810 4.74091 4.87020 4.95484 5.01196 5.13989 5.27416 5.33477 5.37024 5.44264 5.47131 5.50622 5.51738 5.58543 5.70719 5.75618 5.77788 5.82160 5.83841 5.86214 5.89581 6.01053 6.03492 6.14318 6.20627 6.28573 6.38688 6.46311 6.52076 6.53613 6.68682 6.70039 6.83866 6.96111 7.01294 7.16130 7.43957 7.73344 7.82890 8.17205 8.48443 8.86598 9.24318 9.87728 10.44708 11.33099 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.003220 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.005286 B = 8693.885121 C = 9416.925084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.112 3.888 4 N -0.633 5.633 5 C 0.138 3.862 6 C -0.111 4.111 7 C -0.144 4.144 8 C -0.136 4.136 9 C 0.704 3.296 10 O -0.582 6.582 11 N -0.741 5.741 12 C 0.169 3.831 13 C -0.145 4.145 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.149 3.851 25 C -0.138 4.138 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.389 0.611 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.088 0.912 47 H 0.020 0.980 48 H 0.253 0.747 49 H 0.020 0.980 50 H 0.057 0.943 51 H 0.054 0.946 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 6.128 20.334 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.012 4.012 4 N -0.370 5.370 5 C 0.015 3.985 6 C -0.131 4.131 7 C -0.202 4.202 8 C -0.193 4.193 9 C 0.406 3.594 10 O -0.459 6.459 11 N -0.395 5.395 12 C 0.065 3.935 13 C -0.186 4.186 14 C 0.048 3.952 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.022 3.978 25 C -0.178 4.178 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.223 0.777 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.038 0.962 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.076 0.924 51 H 0.072 0.928 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.521 6.022 20.232 23.157 hybrid contribution -0.816 -0.667 -0.629 1.227 sum -10.337 5.355 19.603 22.800 Atomic orbital electron populations 1.21707 0.95115 1.02101 1.01859 1.22001 0.96082 0.97306 1.03083 1.21528 0.80191 0.96723 1.02729 1.47174 1.05613 1.79062 1.05163 1.21368 0.97546 0.96105 0.83507 1.21527 0.99286 0.96856 0.95454 1.21772 1.00807 1.01807 0.95812 1.21766 0.99921 0.98890 0.98769 1.15914 0.85472 0.77705 0.80320 1.90925 1.11390 1.57573 1.86036 1.45688 1.09412 1.79320 1.05126 1.20880 0.94811 0.97906 0.79932 1.22561 1.00840 0.95014 1.00135 1.20744 0.90975 0.99311 0.84188 1.44111 1.63036 1.10760 1.13640 1.19206 1.03180 1.19244 0.96631 0.91656 1.25065 0.94637 1.01671 0.98297 1.70048 1.04138 1.35825 1.44460 0.86243 0.78098 0.80889 0.81647 1.20289 1.21743 1.21595 1.20827 0.95577 0.88338 0.93063 1.22328 0.99331 0.99103 0.97039 0.92408 0.92716 0.92432 0.91349 0.91641 0.90473 0.90978 0.91168 0.89777 0.91680 0.92404 0.92615 0.92887 0.92081 0.92564 0.93910 0.77694 0.90185 0.92982 0.92838 0.89408 0.96177 0.93662 0.96231 0.92413 0.92778 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.15 -1.20 6.26 -26.73 -0.17 -1.37 16 3 C 0.11 0.94 5.17 -4.04 -0.02 0.92 16 4 N -0.63 -7.31 2.36 -179.42 -0.42 -7.73 16 5 C 0.14 1.44 5.00 -4.04 -0.02 1.42 16 6 C -0.11 -1.07 3.13 -90.62 -0.28 -1.36 16 7 C -0.14 -1.13 9.19 37.16 0.34 -0.79 16 8 C -0.14 -1.67 7.94 37.16 0.30 -1.37 16 9 C 0.70 10.90 6.82 -86.91 -0.59 10.31 16 10 O -0.58 -11.27 13.80 5.29 0.07 -11.20 16 11 N -0.74 -10.92 4.94 -58.62 -0.29 -11.21 16 12 C 0.17 3.02 2.41 -67.87 -0.16 2.86 16 13 C -0.15 -2.98 5.66 -26.60 -0.15 -3.13 16 14 C 0.17 4.32 5.30 -3.71 -0.02 4.30 16 15 N -0.59 -14.98 3.00 -172.33 -0.52 -15.49 16 16 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 17 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.58 11.20 55.49 0.62 -25.96 16 20 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 25 C -0.14 -2.34 5.55 -26.62 -0.15 -2.49 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.07 0.58 6.36 -51.93 -0.33 0.25 16 33 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 34 H 0.08 1.06 7.42 -51.93 -0.39 0.68 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.84 8.00 -51.93 -0.42 0.43 16 40 H 0.06 0.82 6.06 -51.93 -0.31 0.50 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.39 4.73 6.33 -40.82 -0.26 4.48 16 43 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 51 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -31.57 397.91 -10.36 -41.93 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -9.98 Total: 2.24 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.82 Total: 4.63 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.61 Total: -60.39 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.57 -10.36 -41.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.852 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds