Wall clock time and date at job start Tue Mar 31 2020 10:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46726 * 2 1 4 4 N 1.46497 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.46502 * 120.00249 * 269.99936 * 4 3 2 6 6 C 1.52996 * 109.47369 * 269.99784 * 5 4 3 7 7 C 1.52999 * 109.47334 * 174.99531 * 6 5 4 8 8 C 1.52998 * 109.47207 * 295.00277 * 6 5 4 9 9 C 1.34778 * 120.00206 * 89.99506 * 4 3 2 10 10 O 1.21585 * 120.00569 * 180.02562 * 9 4 3 11 11 N 1.34781 * 119.99776 * 0.02562 * 9 4 3 12 12 C 1.46500 * 119.99994 * 179.97438 * 11 9 4 13 13 C 1.53076 * 109.43981 * 84.79590 * 12 11 9 14 14 C 1.53183 * 109.29478 * 181.23571 * 13 12 11 15 15 N 1.46930 * 108.89468 * 305.57480 * 14 13 12 16 16 C 1.36937 * 120.63259 * 233.51494 * 15 14 13 17 17 H 1.08000 * 119.99761 * 151.83401 * 16 15 14 18 18 C 1.38806 * 120.00219 * 331.83653 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46925 * 118.73328 * 53.53726 * 15 14 13 25 25 C 1.53033 * 109.45902 * 204.99610 * 12 11 9 26 26 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47775 * 300.00048 * 1 2 3 28 28 H 1.09002 * 109.47197 * 60.00249 * 1 2 3 29 29 H 1.08997 * 109.47309 * 239.99817 * 2 1 3 30 30 H 1.08996 * 109.46672 * 119.99288 * 2 1 3 31 31 H 1.08997 * 109.47376 * 59.99858 * 3 2 1 32 32 H 1.09001 * 109.47364 * 299.99358 * 3 2 1 33 33 H 1.09000 * 109.46718 * 29.99894 * 5 4 3 34 34 H 1.09005 * 109.47068 * 149.99808 * 5 4 3 35 35 H 1.09005 * 109.46595 * 54.99558 * 6 5 4 36 36 H 1.09004 * 109.46744 * 60.00516 * 7 6 5 37 37 H 1.08999 * 109.46981 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47167 * 300.00535 * 7 6 5 39 39 H 1.09004 * 109.47082 * 299.99613 * 8 6 5 40 40 H 1.08999 * 109.47326 * 59.99229 * 8 6 5 41 41 H 1.08999 * 109.47369 * 179.97438 * 8 6 5 42 42 H 0.97007 * 119.99982 * 359.97438 * 11 9 4 43 43 H 1.08994 * 109.45870 * 324.97548 * 12 11 9 44 44 H 1.09005 * 109.39190 * 61.35477 * 13 12 11 45 45 H 1.09004 * 109.62337 * 301.25270 * 13 12 11 46 46 H 1.09005 * 109.58619 * 185.72200 * 14 13 12 47 47 H 1.08998 * 109.58733 * 65.43770 * 14 13 12 48 48 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 49 49 H 1.09001 * 109.58688 * 66.18006 * 24 15 14 50 50 H 1.08996 * 109.58570 * 186.45714 * 24 15 14 51 51 H 1.09003 * 109.49897 * 58.68032 * 25 12 11 52 52 H 1.09000 * 109.52987 * 298.59684 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2369 1.4429 1.2696 6 6 4.4917 2.8854 1.7112 7 6 5.1446 2.8875 3.0949 8 6 5.4218 3.5693 0.7072 9 6 4.1793 1.4424 -1.1663 10 8 5.3951 1.4420 -1.1658 11 7 3.5059 1.4426 -2.3338 12 6 4.2389 1.4429 -3.6022 13 6 4.6073 0.0055 -3.9781 14 6 5.4002 0.0124 -5.2888 15 7 4.6230 0.7260 -6.3113 16 6 4.3511 0.1379 -7.5177 17 1 3.4611 0.4130 -8.0641 18 6 5.2194 -0.8117 -8.0383 19 7 6.4442 -0.9123 -7.5669 20 14 4.6496 -1.9471 -9.4079 21 1 3.2410 -1.6327 -9.7575 22 1 5.5106 -1.7530 -10.6021 23 1 4.7443 -3.3576 -8.9532 24 6 4.1436 2.0828 -6.0148 25 6 3.3617 2.0528 -4.6979 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5137 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.6475 0.9291 2.0291 34 1 5.1894 0.9290 1.1397 35 1 3.5453 3.4244 1.7552 36 1 6.0911 2.3485 3.0508 37 1 5.3257 3.9152 3.4096 38 1 4.4819 2.4002 3.8101 39 1 6.3683 3.0303 0.6632 40 1 4.9567 3.5678 -0.2785 41 1 5.6030 4.5972 1.0215 42 1 2.5358 1.4425 -2.3342 43 1 5.1492 2.0327 -3.4954 44 1 3.6966 -0.5797 -4.1068 45 1 5.2148 -0.4354 -3.1877 46 1 5.5774 -1.0128 -5.6140 47 1 6.3540 0.5173 -5.1361 48 1 7.0510 -1.5756 -7.9309 49 1 4.9939 2.7582 -5.9196 50 1 3.4938 2.4249 -6.8203 51 1 3.0826 3.0684 -4.4172 52 1 2.4623 1.4497 -4.8225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609340196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:02 Heat of formation + Delta-G solvation = -45.182477 kcal Electronic energy + Delta-G solvation = -27698.381041 eV Core-core repulsion = 24118.086518 eV Total energy + Delta-G solvation = -3580.294523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51992 -39.33582 -37.62463 -36.47367 -35.64791 -33.82449 -33.26212 -31.72952 -31.11914 -28.04601 -27.82440 -27.14380 -26.08916 -23.91435 -23.60958 -22.67656 -21.46413 -21.14646 -20.28330 -19.18413 -18.57793 -17.63109 -16.89434 -16.62975 -16.12469 -15.67061 -15.59139 -15.47355 -15.35733 -15.07852 -14.79425 -14.72996 -14.30442 -14.10016 -13.98244 -13.78382 -13.23215 -13.14781 -13.03670 -13.01889 -12.78938 -12.66668 -12.59287 -12.52264 -12.36096 -12.11298 -12.01460 -11.96035 -11.86034 -11.79312 -11.64235 -11.54564 -11.51803 -11.35843 -11.02377 -10.59100 -10.03224 -9.42270 -8.71700 -7.87312 -5.34085 1.46774 1.48234 1.59291 1.70651 2.23843 2.51439 2.98264 3.28978 3.66086 3.87202 3.90806 3.97053 3.99589 4.09483 4.16389 4.19884 4.34291 4.39667 4.47123 4.56017 4.57301 4.66679 4.68457 4.73087 4.80184 4.82115 4.85351 4.89457 4.98171 5.02740 5.04605 5.07864 5.09284 5.13374 5.21930 5.23124 5.25635 5.31080 5.40709 5.44309 5.46611 5.48784 5.63490 5.65075 5.68330 5.71714 6.02678 6.38502 7.06236 7.13074 7.68085 7.83892 8.37185 9.19906 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.003220 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.005286 B = 8693.885121 C = 9416.925084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.108 3.892 4 N -0.624 5.624 5 C 0.135 3.865 6 C -0.104 4.104 7 C -0.140 4.140 8 C -0.131 4.131 9 C 0.699 3.301 10 O -0.628 6.628 11 N -0.729 5.729 12 C 0.182 3.818 13 C -0.127 4.127 14 C 0.185 3.815 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.075 0.925 18 C -0.056 4.056 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.261 1.261 22 H -0.293 1.293 23 H -0.292 1.292 24 C 0.142 3.858 25 C -0.120 4.120 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.054 0.946 42 H 0.405 0.595 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.053 0.947 47 H -0.013 1.013 48 H 0.249 0.751 49 H 0.010 0.990 50 H 0.069 0.931 51 H 0.089 0.911 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.140 7.043 22.003 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.014 4.014 4 N -0.360 5.360 5 C 0.012 3.988 6 C -0.123 4.123 7 C -0.198 4.198 8 C -0.189 4.189 9 C 0.400 3.600 10 O -0.509 6.509 11 N -0.385 5.385 12 C 0.077 3.923 13 C -0.168 4.168 14 C 0.058 3.942 15 N -0.333 5.333 16 C -0.390 4.390 17 H 0.092 0.908 18 C -0.251 4.251 19 N -0.585 5.585 20 Si 0.798 3.202 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.017 3.983 25 C -0.159 4.159 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.243 0.757 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.005 0.995 48 H 0.058 0.942 49 H 0.028 0.972 50 H 0.087 0.913 51 H 0.108 0.892 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.168 6.964 21.945 26.523 hybrid contribution 0.316 -0.901 -1.095 1.453 sum -12.852 6.063 20.850 25.232 Atomic orbital electron populations 1.21677 0.93575 1.02283 1.02838 1.21935 0.97305 0.96786 1.01947 1.21806 0.77775 0.97278 1.04568 1.47219 1.07088 1.77582 1.04110 1.21511 0.96850 0.96856 0.83590 1.21485 0.99414 0.95926 0.95519 1.21738 1.00644 1.02411 0.94979 1.21703 0.99144 0.99651 0.98398 1.16123 0.85020 0.77451 0.81360 1.90904 1.13684 1.59474 1.86800 1.45292 1.09985 1.79319 1.03890 1.20460 0.94650 0.95366 0.81865 1.22292 0.99974 0.97248 0.97245 1.20431 0.90592 0.96889 0.86271 1.44354 1.63055 1.12629 1.13226 1.19605 1.03156 1.19116 0.97124 0.90775 1.25897 0.94684 1.03420 1.01065 1.70223 1.05414 1.36591 1.46270 0.85173 0.78242 0.78366 0.78457 1.18511 1.22057 1.21939 1.21032 0.95800 0.85871 0.95646 1.22119 0.98442 1.01346 0.94040 0.92690 0.91091 0.92094 0.93778 0.91596 0.87553 0.90222 0.87901 0.92698 0.89940 0.93426 0.91937 0.90761 0.94696 0.95141 0.92702 0.75710 0.92928 0.92359 0.94057 0.92811 0.99488 0.94221 0.97165 0.91263 0.89222 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.14 -1.94 6.26 30.59 0.19 -1.75 16 3 C 0.11 1.45 5.17 86.38 0.45 1.90 16 4 N -0.62 -13.37 2.36 -839.84 -1.98 -15.36 16 5 C 0.13 2.59 5.00 86.38 0.43 3.02 16 6 C -0.10 -1.79 3.13 -10.80 -0.03 -1.82 16 7 C -0.14 -1.87 9.19 71.98 0.66 -1.20 16 8 C -0.13 -3.21 7.94 71.98 0.57 -2.64 16 9 C 0.70 21.48 6.82 179.05 1.22 22.70 16 10 O -0.63 -25.32 13.80 -3.98 -0.05 -25.38 16 11 N -0.73 -20.66 4.94 -457.64 -2.26 -22.92 16 12 C 0.18 6.51 2.41 45.03 0.11 6.61 16 13 C -0.13 -5.36 5.66 30.68 0.17 -5.19 16 14 C 0.18 9.64 5.30 86.36 0.46 10.09 16 15 N -0.61 -31.29 3.00 -699.11 -2.09 -33.39 16 16 C -0.26 -14.39 9.58 84.03 0.81 -13.58 16 17 H 0.07 3.91 7.89 -2.91 -0.02 3.89 16 18 C -0.06 -3.17 4.92 84.86 0.42 -2.76 16 19 N -0.94 -57.64 11.20 21.65 0.24 -57.40 16 20 Si 0.97 45.43 29.59 68.60 2.03 47.46 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 C 0.14 5.85 6.52 86.36 0.56 6.41 16 25 C -0.12 -3.82 5.55 30.67 0.17 -3.65 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 0.90 8.07 -2.39 -0.02 0.88 16 32 H 0.08 0.98 6.36 -2.39 -0.02 0.97 16 33 H 0.10 1.32 8.07 -2.39 -0.02 1.30 16 34 H 0.05 1.40 7.42 -2.38 -0.02 1.38 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.03 1.01 8.00 -2.38 -0.02 0.99 16 40 H 0.03 0.88 6.06 -2.39 -0.01 0.87 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.41 8.82 6.33 -92.70 -0.59 8.23 16 43 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 44 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.05 3.15 6.06 -2.38 -0.01 3.13 16 47 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 48 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 49 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 50 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 51 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -72.88 397.91 3.05 -69.83 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.27 Total: 19.75 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 6.90 Total: 17.41 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -6.10 Total: -129.07 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.88 3.05 -69.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.644 kcal (2) G-P(sol) polarization free energy of solvation -72.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds