Wall clock time and date at job start Tue Mar 31 2020 10:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46920 * 2 1 4 4 N 1.46497 * 109.47238 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.00129 * 270.00499 * 4 3 2 6 6 C 1.53005 * 109.46942 * 269.99599 * 5 4 3 7 7 C 1.52997 * 109.46791 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99525 * 90.00006 * 4 3 2 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 4 3 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 4 3 11 11 N 1.46904 * 109.47192 * 180.28082 * 10 8 4 12 12 C 1.46959 * 110.99366 * 293.79652 * 11 10 8 13 13 C 1.53055 * 109.36033 * 176.81289 * 12 11 10 14 14 N 1.46951 * 109.36597 * 58.40016 * 13 12 11 15 15 C 1.46904 * 111.00106 * 176.81006 * 14 13 12 16 16 C 1.50703 * 109.47064 * 293.80441 * 15 14 13 17 17 H 1.07997 * 120.00351 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99533 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00460 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99581 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47196 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46852 * 119.99946 * 20 18 16 23 23 H 1.48500 * 109.47037 * 240.00244 * 20 18 16 24 24 C 1.46951 * 110.88318 * 300.67876 * 14 13 12 25 25 C 1.46949 * 111.00195 * 170.00155 * 11 10 8 26 26 H 1.09001 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47702 * 299.99786 * 1 2 3 28 28 H 1.09001 * 109.47349 * 60.00353 * 1 2 3 29 29 H 1.09000 * 109.47318 * 240.00451 * 2 1 3 30 30 H 1.08993 * 109.47225 * 119.99889 * 2 1 3 31 31 H 1.09000 * 109.46757 * 60.00107 * 3 2 1 32 32 H 1.09001 * 109.46821 * 299.99970 * 3 2 1 33 33 H 1.08995 * 109.47364 * 30.00213 * 5 4 3 34 34 H 1.09002 * 109.47090 * 149.99764 * 5 4 3 35 35 H 1.08998 * 109.46999 * 300.00039 * 6 5 4 36 36 H 1.08997 * 109.46656 * 60.00331 * 6 5 4 37 37 H 1.08998 * 109.47437 * 299.99839 * 7 6 5 38 38 H 1.08997 * 109.47195 * 60.00730 * 7 6 5 39 39 H 1.09007 * 109.46786 * 180.02562 * 7 6 5 40 40 H 1.09009 * 109.47352 * 300.27556 * 10 8 4 41 41 H 1.08998 * 109.47585 * 60.27844 * 10 8 4 42 42 H 1.08992 * 109.49244 * 296.77467 * 12 11 10 43 43 H 1.09003 * 109.49250 * 56.84912 * 12 11 10 44 44 H 1.09003 * 109.48877 * 298.43651 * 13 12 11 45 45 H 1.08995 * 109.48745 * 178.37289 * 13 12 11 46 46 H 1.09003 * 109.46776 * 53.80031 * 15 14 13 47 47 H 1.08997 * 109.47404 * 173.79853 * 15 14 13 48 48 H 0.97000 * 120.00339 * 179.97438 * 19 18 16 49 49 H 1.08999 * 109.49376 * 299.35664 * 24 14 13 50 50 H 1.08995 * 109.51085 * 179.29736 * 24 14 13 51 51 H 1.09004 * 109.48945 * 303.14997 * 25 11 10 52 52 H 1.08997 * 109.49550 * 63.21794 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.2369 1.4428 1.2696 6 6 4.4917 2.8854 1.7112 7 6 5.2556 2.8855 3.0368 8 6 4.1792 1.4425 -1.1664 9 8 3.5732 1.4428 -2.2170 10 6 5.6862 1.4489 -1.1658 11 7 6.1764 1.4542 -2.5506 12 6 5.8355 0.1990 -3.2346 13 6 6.2921 0.2759 -4.6935 14 7 7.7404 0.5204 -4.7385 15 6 8.2307 0.5256 -6.1233 16 6 8.0846 -0.8535 -6.7131 17 1 7.6695 -1.6539 -6.1186 18 6 8.4808 -1.0933 -8.0118 19 7 8.9858 -0.1186 -8.7359 20 14 8.3004 -2.8029 -8.7427 21 1 7.7093 -3.7143 -7.7301 22 1 7.4123 -2.7419 -9.9313 23 1 9.6355 -3.3115 -9.1478 24 6 8.0813 1.7755 -4.0545 25 6 7.6248 1.6986 -2.5957 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6476 0.9290 2.0290 34 1 5.1894 0.9290 1.1397 35 1 5.0811 3.3991 0.9517 36 1 3.5392 3.3991 1.8411 37 1 4.6659 2.3719 3.7961 38 1 6.2081 2.3716 2.9073 39 1 5.4368 3.9133 3.3517 40 1 6.0457 2.3393 -0.6497 41 1 6.0532 0.5593 -0.6539 42 1 6.3373 -0.6326 -2.7400 43 1 4.7568 0.0466 -3.1988 44 1 5.7701 1.0906 -5.1954 45 1 6.0663 -0.6649 -5.1952 46 1 7.6496 1.2358 -6.7117 47 1 9.2809 0.8168 -6.1359 48 1 9.2649 -0.2874 -9.6494 49 1 7.5796 2.6072 -4.5491 50 1 9.1599 1.9283 -4.0904 51 1 7.8506 2.6395 -2.0939 52 1 8.1469 0.8840 -2.0937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174431.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:36 Heat of formation + Delta-G solvation = -32.667639 kcal Electronic energy + Delta-G solvation = -27001.864863 eV Core-core repulsion = 23422.113024 eV Total energy + Delta-G solvation = -3579.751839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.32160 -38.40134 -36.62822 -35.03332 -34.42460 -32.50862 -32.35835 -30.32621 -29.33323 -27.36807 -26.65472 -25.46136 -23.77156 -22.98244 -22.27094 -21.78812 -21.26175 -19.18245 -19.06550 -17.32601 -16.65632 -16.24295 -15.67759 -15.44676 -15.08011 -14.99156 -14.52011 -14.46272 -14.31921 -14.11706 -13.68930 -13.62410 -13.41927 -13.07265 -12.88338 -12.61287 -12.46998 -12.37609 -12.05896 -11.96666 -11.88704 -11.72100 -11.58111 -11.49586 -11.17767 -11.08393 -10.93149 -10.79159 -10.66036 -10.58680 -10.39903 -10.20832 -9.82119 -9.46010 -9.10345 -8.84386 -8.38633 -8.07125 -7.14314 -5.97260 -3.98163 2.61087 2.72669 3.34807 3.41766 3.47033 4.06963 4.37984 4.46334 4.47522 4.56052 4.75226 4.76475 4.86492 4.97950 5.03048 5.04852 5.10828 5.17712 5.20731 5.25223 5.36067 5.38354 5.43229 5.44124 5.54871 5.62095 5.63170 5.66625 5.75840 5.80155 5.86495 5.88291 5.91491 5.98922 6.00891 6.22356 6.28636 6.38857 6.50265 6.69764 6.84645 7.07125 7.24147 7.33923 7.42791 7.46419 7.86696 8.15855 8.19140 8.28644 8.62763 9.09791 9.65793 11.13790 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002857 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.108259 B = 9798.706542 C =10980.507905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.117 3.883 4 N -0.621 5.621 5 C 0.108 3.892 6 C -0.144 4.144 7 C -0.151 4.151 8 C 0.515 3.485 9 O -0.511 6.511 10 C 0.039 3.961 11 N -0.523 5.523 12 C 0.055 3.945 13 C 0.071 3.929 14 N -0.540 5.540 15 C 0.193 3.807 16 C -0.505 4.505 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.057 3.943 25 C 0.062 3.938 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.031 0.969 43 H 0.087 0.913 44 H 0.030 0.970 45 H 0.085 0.915 46 H -0.008 1.008 47 H 0.029 0.971 48 H 0.260 0.740 49 H 0.031 0.969 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.603 4.999 25.881 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.006 4.006 4 N -0.356 5.356 5 C -0.015 4.015 6 C -0.183 4.183 7 C -0.209 4.209 8 C 0.303 3.697 9 O -0.384 6.384 10 C -0.093 4.093 11 N -0.248 5.248 12 C -0.072 4.072 13 C -0.058 4.058 14 N -0.265 5.265 15 C 0.068 3.932 16 C -0.543 4.543 17 H 0.081 0.919 18 C -0.147 4.147 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.072 4.072 25 C -0.065 4.065 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.105 0.895 44 H 0.049 0.951 45 H 0.103 0.897 46 H 0.010 0.990 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.049 0.951 50 H 0.090 0.910 51 H 0.088 0.912 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.847 5.031 25.091 28.200 hybrid contribution 0.031 -0.810 -0.352 0.884 sum -11.816 4.221 24.739 27.739 Atomic orbital electron populations 1.21685 0.95168 1.01945 1.01864 1.21881 0.96154 0.97290 1.02499 1.21467 0.79195 0.96935 1.02971 1.48051 1.06526 1.74999 1.05983 1.21668 0.97359 0.96993 0.85508 1.21985 1.01217 0.97131 0.97980 1.21709 1.00348 1.02146 0.96651 1.20688 0.90134 0.75775 0.83134 1.90702 1.69936 1.47211 1.30567 1.21992 0.92153 1.02481 0.92640 1.61900 1.14281 1.36673 1.11959 1.22408 1.01096 0.88291 0.95431 1.21940 0.88650 1.01629 0.93549 1.62305 1.12876 1.31057 1.20297 1.19701 0.95188 0.97039 0.81268 1.21204 1.40824 0.95396 0.96909 0.91894 1.24992 0.95464 0.97140 0.97086 1.69968 1.42953 1.31647 1.09322 0.86457 0.77653 0.84399 0.79006 1.19680 1.21121 1.21060 1.22037 0.99789 0.92651 0.92704 1.22190 0.86350 0.99907 0.98101 0.92497 0.92803 0.92378 0.91387 0.92144 0.90935 0.89825 0.90348 0.90251 0.91454 0.91607 0.92594 0.92363 0.92354 0.88334 0.92324 0.95038 0.89528 0.95148 0.89692 0.99043 0.95272 0.93031 0.95065 0.90952 0.91218 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.14 -1.18 6.26 -26.73 -0.17 -1.35 16 3 C 0.12 1.03 5.41 -4.04 -0.02 1.01 16 4 N -0.62 -5.94 2.47 -173.68 -0.43 -6.37 16 5 C 0.11 0.69 5.21 -4.04 -0.02 0.67 16 6 C -0.14 -0.84 6.26 -26.73 -0.17 -1.01 16 7 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 8 C 0.52 6.79 7.37 -10.98 -0.08 6.71 16 9 O -0.51 -8.90 13.92 5.55 0.08 -8.82 16 10 C 0.04 0.47 4.00 -4.97 -0.02 0.45 16 11 N -0.52 -8.46 4.45 -235.90 -1.05 -9.51 16 12 C 0.06 1.00 5.26 -3.76 -0.02 0.98 16 13 C 0.07 1.54 5.43 -3.77 -0.02 1.52 16 14 N -0.54 -12.37 4.70 -235.91 -1.11 -13.48 16 15 C 0.19 5.25 4.72 -4.97 -0.02 5.23 16 16 C -0.50 -14.63 8.47 -34.44 -0.29 -14.92 16 17 H 0.06 1.81 7.13 -52.49 -0.37 1.44 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 20 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.06 1.10 5.61 -3.77 -0.02 1.08 16 25 C 0.06 0.97 5.61 -3.77 -0.02 0.94 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.08 0.91 7.42 -51.93 -0.39 0.52 16 33 H 0.08 0.39 8.07 -51.93 -0.42 -0.02 16 34 H 0.08 0.48 6.45 -51.93 -0.33 0.14 16 35 H 0.07 0.46 7.20 -51.93 -0.37 0.09 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.98 7.04 -51.92 -0.37 0.62 16 41 H 0.06 0.64 7.39 -51.93 -0.38 0.25 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.61 5.85 -51.93 -0.30 1.31 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.95 6.79 -51.93 -0.35 1.60 16 46 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 47 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 1.32 8.07 -51.93 -0.42 0.91 16 51 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 52 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -33.46 402.41 -10.99 -44.44 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -10.02 Total: -4.59 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.24 Total: 1.79 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -1.85 Total: -56.03 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.46 -10.99 -44.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174431.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.775 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds